RNA–Protein interactions for RNA: ENST00000266546.10

CLSTN3-201, Transcript of calsyntenin 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,185 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-201ENST00000266546 COX17Q14061 63 aa8.13□□□□□ -1.11
CLSTN3-201ENST00000266546 RPS28P62857 69 aaKnown RBP8.13□□□□□ -1.11
CLSTN3-201ENST00000266546 C11orf72Q8NBR9 251 aa8.13□□□□□ -1.11
CLSTN3-201ENST00000266546 M0R2N4 97 aa8.12□□□□□ -1.11
CLSTN3-201ENST00000266546 MIFP14174 115 aa8.12□□□□□ -1.11
CLSTN3-201ENST00000266546 SMCR5Q8TEV8 140 aa8.11□□□□□ -1.11
CLSTN3-201ENST00000266546 EIF4EBP3O60516 100 aaPredicted RBP8.11□□□□□ -1.11
CLSTN3-201ENST00000266546 MP68P56378 58 aa8.11□□□□□ -1.11
CLSTN3-201ENST00000266546 ITPR1Q14643 2758 aa8.11□□□□□ -1.11
CLSTN3-201ENST00000266546 C9orf116Q5BN46 136 aaPredicted RBP8.1□□□□□ -1.11
CLSTN3-201ENST00000266546 FAM19A3Q7Z5A8 133 aa8.1□□□□□ -1.11
CLSTN3-201ENST00000266546 GCN1Q92616 2671 aaKnown RBP8.09□□□□□ -1.11
CLSTN3-201ENST00000266546 Q8N3U1 123 aa8.09□□□□□ -1.11
CLSTN3-201ENST00000266546 C3orf84H3BNL1 204 aa8.09□□□□□ -1.11
CLSTN3-201ENST00000266546 IGHV3OR16-9A0A0B4J2B5 98 aa8.08□□□□□ -1.12
CLSTN3-201ENST00000266546 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.07□□□□□ -1.12
CLSTN3-201ENST00000266546 UNQ6190/PRO20217Q6UXQ8 127 aa8.07□□□□□ -1.12
CLSTN3-201ENST00000266546 ZNF73O43830 326 aaPredicted RBP8.07□□□□□ -1.12
CLSTN3-201ENST00000266546 IGHV4-30-4P0DP06 118 aa8.07□□□□□ -1.12
CLSTN3-201ENST00000266546 TRBV10-3A0A0K0K1G6 114 aa8.06□□□□□ -1.12
CLSTN3-201ENST00000266546 CYSRT1A8MQ03 144 aa8.06□□□□□ -1.12
CLSTN3-201ENST00000266546 CDK2AP2O75956 126 aa8.06□□□□□ -1.12
CLSTN3-201ENST00000266546 FHL2Q14192 279 aa8.06□□□□□ -1.12
CLSTN3-201ENST00000266546 Q6ZVQ6 151 aa8.06□□□□□ -1.12
CLSTN3-201ENST00000266546 MUC7Q8TAX7 377 aa8.06□□□□□ -1.12
CLSTN3-201ENST00000266546 UBR5O95071 2799 aaPredicted RBP8.05□□□□□ -1.12
CLSTN3-201ENST00000266546 UNC79Q9P2D8 2635 aa8.05□□□□□ -1.12
CLSTN3-201ENST00000266546 LINC01547P58512 204 aaPredicted RBP8.04□□□□□ -1.12
CLSTN3-201ENST00000266546 C4orf26Q17RF5 130 aa8.04□□□□□ -1.12
CLSTN3-201ENST00000266546 IGKV2-28A0A075B6P5 120 aa8.04□□□□□ -1.12
CLSTN3-201ENST00000266546 IGKV2D-28P01615 120 aa8.04□□□□□ -1.12
CLSTN3-201ENST00000266546 LINC00575Q6W349 94 aa8.04□□□□□ -1.12
CLSTN3-201ENST00000266546 V9GYY9 64 aa8.04□□□□□ -1.12
CLSTN3-201ENST00000266546 DCHS1Q96JQ0 3298 aa8.03□□□□□ -1.12
CLSTN3-201ENST00000266546 ZFHX4Q86UP3 3567 aa8.03□□□□□ -1.12
CLSTN3-201ENST00000266546 IGKV2-24A0A0C4DH68 120 aa8.03□□□□□ -1.12
CLSTN3-201ENST00000266546 TRAV10A0A0B4J240 114 aa8.03□□□□□ -1.12
CLSTN3-201ENST00000266546 KRTAP24-1Q3LI83 254 aa8.02□□□□□ -1.13
CLSTN3-201ENST00000266546 M0R378 163 aa8.02□□□□□ -1.13
CLSTN3-201ENST00000266546 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.02□□□□□ -1.13
CLSTN3-201ENST00000266546 A0A1B0GUV1 79 aa8.02□□□□□ -1.13
CLSTN3-201ENST00000266546 ASPMQ8IZT6 3477 aa8.01□□□□□ -1.13
CLSTN3-201ENST00000266546 C1orf195Q5TG92 126 aa8.01□□□□□ -1.13
CLSTN3-201ENST00000266546 RETNQ9HD89 108 aa8.01□□□□□ -1.13
CLSTN3-201ENST00000266546 HRNRQ86YZ3 2850 aaPredicted RBP8.01□□□□□ -1.13
CLSTN3-201ENST00000266546 LRCOL1A6NCL2 159 aa8.01□□□□□ -1.13
CLSTN3-201ENST00000266546 KRTAP10-3P60369 221 aa8□□□□□ -1.13
CLSTN3-201ENST00000266546 LELP1Q5T871 98 aa8□□□□□ -1.13
CLSTN3-201ENST00000266546 TMEM254Q8TBM7 123 aa8□□□□□ -1.13
CLSTN3-201ENST00000266546 CELA1Q9UNI1 258 aa8□□□□□ -1.13
CLSTN3-201ENST00000266546 A0A0J9YWU9 116 aa8□□□□□ -1.13
CLSTN3-201ENST00000266546 NANOS2P60321 138 aaKnown RBP8□□□□□ -1.13
CLSTN3-201ENST00000266546 LINC01600Q96MT4 127 aa7.99□□□□□ -1.13
CLSTN3-201ENST00000266546 LINC01561Q8N1V8 128 aa7.99□□□□□ -1.13
CLSTN3-201ENST00000266546 PRO0628Q9UI54 55 aa7.99□□□□□ -1.13
CLSTN3-201ENST00000266546 PRR4Q16378 134 aa7.98□□□□□ -1.13
CLSTN3-201ENST00000266546 SPENQ96T58 3664 aaKnown RBP7.98□□□□□ -1.13
CLSTN3-201ENST00000266546 PRYO14603 147 aa7.98□□□□□ -1.13
CLSTN3-201ENST00000266546 TRBV7-6A0A0J9YX20 115 aa7.98□□□□□ -1.13
CLSTN3-201ENST00000266546 CXCL6P80162 114 aa7.98□□□□□ -1.13
CLSTN3-201ENST00000266546 C19orf73Q9NVV2 129 aa7.98□□□□□ -1.13
CLSTN3-201ENST00000266546 SYCNQ0VAF6 134 aa7.97□□□□□ -1.13
CLSTN3-201ENST00000266546 C6orf223Q8N319 242 aa7.97□□□□□ -1.13
CLSTN3-201ENST00000266546 FAM30AQ9NZY2 134 aa7.97□□□□□ -1.13
CLSTN3-201ENST00000266546 BCE1O60756 84 aa7.97□□□□□ -1.13
CLSTN3-201ENST00000266546 NDUFS5O43920 106 aa7.96□□□□□ -1.14
CLSTN3-201ENST00000266546 KPRPQ5T749 579 aaPredicted RBP7.96□□□□□ -1.14
CLSTN3-201ENST00000266546 NDUFB1O75438 58 aa7.96□□□□□ -1.14
CLSTN3-201ENST00000266546 LAMA5O15230 3695 aa7.95□□□□□ -1.14
CLSTN3-201ENST00000266546 SPTSSBQ8NFR3 76 aa7.94□□□□□ -1.14
CLSTN3-201ENST00000266546 SMG1Q96Q15 3661 aaKnown RBP7.94□□□□□ -1.14
CLSTN3-201ENST00000266546 Q6ZQT0 140 aa7.93□□□□□ -1.14
CLSTN3-201ENST00000266546 HIGD2AQ9BW72 106 aa7.93□□□□□ -1.14
CLSTN3-201ENST00000266546 DHRS4-AS1Q9P1J3 65 aa7.93□□□□□ -1.14
CLSTN3-201ENST00000266546 EGFEM1PQ0D2K5 195 aa7.93□□□□□ -1.14
CLSTN3-201ENST00000266546 C4orf48Q5BLP8 95 aa7.93□□□□□ -1.14
CLSTN3-201ENST00000266546 Q8N9L7 120 aa7.93□□□□□ -1.14
CLSTN3-201ENST00000266546 CSNK1G2-AS1Q8NCQ2 148 aa7.93□□□□□ -1.14
CLSTN3-201ENST00000266546 SPATA3Q8NHX4 192 aa7.93□□□□□ -1.14
CLSTN3-201ENST00000266546 UTP20O75691 2785 aaKnown RBP7.93□□□□□ -1.14
CLSTN3-201ENST00000266546 WFDC10BQ8IUB3 73 aa7.93□□□□□ -1.14
CLSTN3-201ENST00000266546 WFDC13Q8IUB5 93 aa7.92□□□□□ -1.14
CLSTN3-201ENST00000266546 X6R8D5 127 aa7.92□□□□□ -1.14
CLSTN3-201ENST00000266546 H0Y9J4 135 aa7.92□□□□□ -1.14
CLSTN3-201ENST00000266546 C14orf177Q52M58 125 aa7.92□□□□□ -1.14
CLSTN3-201ENST00000266546 ZANQ9Y493 2812 aa7.91□□□□□ -1.14
CLSTN3-201ENST00000266546 UBE2AP49459 152 aa7.91□□□□□ -1.14
CLSTN3-201ENST00000266546 ESRGQ1W209 222 aa7.91□□□□□ -1.14
CLSTN3-201ENST00000266546 KMT2BQ9UMN6 2715 aaPredicted RBP7.9□□□□□ -1.14
CLSTN3-201ENST00000266546 APCP25054 2843 aa7.9□□□□□ -1.14
CLSTN3-201ENST00000266546 NUPR2A6NF83 97 aa7.9□□□□□ -1.14
CLSTN3-201ENST00000266546 WIPF1O43516 503 aa7.9□□□□□ -1.14
CLSTN3-201ENST00000266546 C9orf129Q5T035 196 aaKnown RBP7.9□□□□□ -1.14
CLSTN3-201ENST00000266546 LOC110117498A0A087WWA1 95 aa7.9□□□□□ -1.15
CLSTN3-201ENST00000266546 RPL37AP8A6NKH3 93 aa7.9□□□□□ -1.15
CLSTN3-201ENST00000266546 GIG44P09565 113 aaPredicted RBP7.9□□□□□ -1.15
CLSTN3-201ENST00000266546 C1orf137Q5JT78 98 aa7.89□□□□□ -1.15
CLSTN3-201ENST00000266546 C2orf48Q96LS8 159 aa7.89□□□□□ -1.15
CLSTN3-201ENST00000266546 TM2D3Q9BRN9 247 aa7.88□□□□□ -1.15
CLSTN3-201ENST00000266546 RELNP78509 3460 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 94.5 ms