RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 ODF3L2Q3SX64 289 aa9.79□□□□□ -0.84
CCDC88A-201ENST00000263630 MIR22HGQ0VDD5 57 aa9.79□□□□□ -0.84
CCDC88A-201ENST00000263630 BRI3O95415 125 aa9.79□□□□□ -0.84
CCDC88A-201ENST00000263630 CD164Q04900 197 aa9.79□□□□□ -0.84
CCDC88A-201ENST00000263630 Q96NJ1 140 aa9.79□□□□□ -0.84
CCDC88A-201ENST00000263630 KIF25-AS1Q9Y6Z4 181 aa9.79□□□□□ -0.84
CCDC88A-201ENST00000263630 ERC2-IT1O76042 136 aa9.78□□□□□ -0.84
CCDC88A-201ENST00000263630 ZNF462Q96JM2 2506 aa9.78□□□□□ -0.84
CCDC88A-201ENST00000263630 CDIP1Q9H305 208 aa9.77□□□□□ -0.84
CCDC88A-201ENST00000263630 COX6B2Q6YFQ2 88 aa9.75□□□□□ -0.85
CCDC88A-201ENST00000263630 Q6ZRP5 223 aa9.75□□□□□ -0.85
CCDC88A-201ENST00000263630 LINC00476Q8WZB0 136 aa9.75□□□□□ -0.85
CCDC88A-201ENST00000263630 ELOF1P60002 83 aaKnown RBP9.75□□□□□ -0.85
CCDC88A-201ENST00000263630 COA5Q86WW8 74 aa9.75□□□□□ -0.85
CCDC88A-201ENST00000263630 Q6ZPA2 131 aa9.74□□□□□ -0.85
CCDC88A-201ENST00000263630 PCSK5Q92824 1860 aa9.74□□□□□ -0.85
CCDC88A-201ENST00000263630 Q6ZQT0 140 aa9.74□□□□□ -0.85
CCDC88A-201ENST00000263630 COX8CQ7Z4L0 72 aa9.74□□□□□ -0.85
CCDC88A-201ENST00000263630 C16orf95Q9H693 158 aa9.73□□□□□ -0.85
CCDC88A-201ENST00000263630 LINC00167Q96N53 147 aa9.73□□□□□ -0.85
CCDC88A-201ENST00000263630 TLN1Q9Y490 2541 aaKnown RBP9.73□□□□□ -0.85
CCDC88A-201ENST00000263630 CDC42SE1Q9NRR8 79 aa9.73□□□□□ -0.85
CCDC88A-201ENST00000263630 NAV2Q8IVL1 2488 aa9.72□□□□□ -0.85
CCDC88A-201ENST00000263630 A8MWP4 228 aa9.72□□□□□ -0.85
CCDC88A-201ENST00000263630 KTN1-AS1Q86SY8 53 aa9.71□□□□□ -0.85
CCDC88A-201ENST00000263630 C9orf129Q5T035 196 aaKnown RBP9.71□□□□□ -0.86
CCDC88A-201ENST00000263630 Q6ZRX8 168 aa9.71□□□□□ -0.86
CCDC88A-201ENST00000263630 ZNF580Q9UK33 172 aa9.71□□□□□ -0.86
CCDC88A-201ENST00000263630 TRBV7-4A0A0J9YYF1 115 aa9.7□□□□□ -0.86
CCDC88A-201ENST00000263630 TM2D3Q9BRN9 247 aa9.69□□□□□ -0.86
CCDC88A-201ENST00000263630 FAM19A4Q96LR4 140 aa9.69□□□□□ -0.86
CCDC88A-201ENST00000263630 LCA10Q71F78 164 aa9.69□□□□□ -0.86
CCDC88A-201ENST00000263630 FHL3Q13643 280 aa9.68□□□□□ -0.86
CCDC88A-201ENST00000263630 IGLV5-39A0A0G2JS06 123 aa9.68□□□□□ -0.86
CCDC88A-201ENST00000263630 A0A1W2PNU3 283 aaPredicted RBP9.68□□□□□ -0.86
CCDC88A-201ENST00000263630 URB1-AS1Q96HZ7 61 aa9.67□□□□□ -0.86
CCDC88A-201ENST00000263630 MRPL34Q9BQ48 92 aaKnown RBP9.67□□□□□ -0.86
CCDC88A-201ENST00000263630 C16orf90A8MZG2 172 aa9.66□□□□□ -0.86
CCDC88A-201ENST00000263630 COL4A3Q01955 1670 aa9.66□□□□□ -0.86
CCDC88A-201ENST00000263630 Q6ZSN1 163 aa9.65□□□□□ -0.86
CCDC88A-201ENST00000263630 LINC00483Q53H64 154 aa9.65□□□□□ -0.86
CCDC88A-201ENST00000263630 CSNK1G2-AS1Q8NCQ2 148 aa9.65□□□□□ -0.87
CCDC88A-201ENST00000263630 J3QL48 77 aa9.64□□□□□ -0.87
CCDC88A-201ENST00000263630 ABCA12Q86UK0 2595 aa9.64□□□□□ -0.87
CCDC88A-201ENST00000263630 H3BNG1 76 aa9.63□□□□□ -0.87
CCDC88A-201ENST00000263630 LINC01546A6NGU7 62 aa9.63□□□□□ -0.87
CCDC88A-201ENST00000263630 LINC00310P59036 64 aa9.63□□□□□ -0.87
CCDC88A-201ENST00000263630 PRO3102Q9H379 93 aa9.63□□□□□ -0.87
CCDC88A-201ENST00000263630 A8MUN3 132 aa9.62□□□□□ -0.87
CCDC88A-201ENST00000263630 IGHV3OR16-9A0A0B4J2B5 98 aa9.62□□□□□ -0.87
CCDC88A-201ENST00000263630 CRIP3Q6Q6R5 217 aa9.61□□□□□ -0.87
CCDC88A-201ENST00000263630 RBM12B-AS1Q9P1G2 102 aa9.61□□□□□ -0.87
CCDC88A-201ENST00000263630 RPL37AP61513 92 aaKnown RBP9.6□□□□□ -0.87
CCDC88A-201ENST00000263630 ST20-AS1Q8NBB2 130 aa9.6□□□□□ -0.87
CCDC88A-201ENST00000263630 RTL8CO15255 209 aa9.6□□□□□ -0.87
CCDC88A-201ENST00000263630 CHTF8P0CG12 524 aa9.6□□□□□ -0.87
CCDC88A-201ENST00000263630 PIEZO2Q9H5I5 2752 aa9.59□□□□□ -0.87
CCDC88A-201ENST00000263630 PHF5AQ7RTV0 110 aaKnown RBP9.59□□□□□ -0.87
CCDC88A-201ENST00000263630 WISP2O76076 250 aa9.58□□□□□ -0.88
CCDC88A-201ENST00000263630 A0A096LNJ9 63 aa9.56□□□□□ -0.88
CCDC88A-201ENST00000263630 ANKRD17O75179 2603 aaKnown RBP9.56□□□□□ -0.88
CCDC88A-201ENST00000263630 WDR87Q6ZQQ6 2873 aa9.56□□□□□ -0.88
CCDC88A-201ENST00000263630 IGLV5-45A0A087WSX0 123 aa9.55□□□□□ -0.88
CCDC88A-201ENST00000263630 IGLV6-57P01721 117 aa9.55□□□□□ -0.88
CCDC88A-201ENST00000263630 PIEZO1Q92508 2521 aa9.55□□□□□ -0.88
CCDC88A-201ENST00000263630 PRR15Q8IV56 129 aa9.54□□□□□ -0.88
CCDC88A-201ENST00000263630 CR1P17927 2039 aa9.54□□□□□ -0.88
CCDC88A-201ENST00000263630 K7EQZ3 153 aa9.54□□□□□ -0.88
CCDC88A-201ENST00000263630 JMJD1CQ15652 2540 aa9.53□□□□□ -0.88
CCDC88A-201ENST00000263630 FAM218AQ96MZ4 157 aa9.53□□□□□ -0.88
CCDC88A-201ENST00000263630 SMR3AQ99954 134 aa9.53□□□□□ -0.88
CCDC88A-201ENST00000263630 PKD1L2Q7Z442 2459 aa9.51□□□□□ -0.89
CCDC88A-201ENST00000263630 GVQW2A0A096LPI5 108 aaPredicted RBP9.51□□□□□ -0.89
CCDC88A-201ENST00000263630 AVPP01185 164 aa9.49□□□□□ -0.89
CCDC88A-201ENST00000263630 IGLV5-37A0A075B6J1 123 aa9.49□□□□□ -0.89
CCDC88A-201ENST00000263630 A0A0A0MQY5 61 aa9.49□□□□□ -0.89
CCDC88A-201ENST00000263630 C8orf17Q9NRJ1 99 aa9.49□□□□□ -0.89
CCDC88A-201ENST00000263630 KLKP1Q107X0 134 aa9.48□□□□□ -0.89
CCDC88A-201ENST00000263630 NBDYA0A0U1RRE5 68 aa9.48□□□□□ -0.89
CCDC88A-201ENST00000263630 LINC00315P59091 139 aa9.48□□□□□ -0.89
CCDC88A-201ENST00000263630 LINC00304Q8N9R0 145 aa9.48□□□□□ -0.89
CCDC88A-201ENST00000263630 SMCPP49901 116 aaPredicted RBP9.47□□□□□ -0.89
CCDC88A-201ENST00000263630 SETD2Q9BYW2 2564 aaPredicted RBP9.47□□□□□ -0.89
CCDC88A-201ENST00000263630 Q1T7F1 81 aa9.47□□□□□ -0.89
CCDC88A-201ENST00000263630 USP9XQ93008 2570 aaPredicted RBP9.47□□□□□ -0.89
CCDC88A-201ENST00000263630 A0A1B0GVX0 72 aa9.46□□□□□ -0.89
CCDC88A-201ENST00000263630 MUC22E2RYF6 1773 aaPredicted RBP9.45□□□□□ -0.9
CCDC88A-201ENST00000263630 OBSCN-AS1Q96MR7 158 aa9.45□□□□□ -0.9
CCDC88A-201ENST00000263630 A0A0D9SG42 100 aa9.45□□□□□ -0.9
CCDC88A-201ENST00000263630 PRO0461Q9UI25 63 aa9.44□□□□□ -0.9
CCDC88A-201ENST00000263630 SPANXA2-OT1Q8N9U9 137 aa9.44□□□□□ -0.9
CCDC88A-201ENST00000263630 FAM104AQ969W3 186 aa9.43□□□□□ -0.9
CCDC88A-201ENST00000263630 DSCR10P59022 87 aa9.43□□□□□ -0.9
CCDC88A-201ENST00000263630 DNAH10OSP0CZ25 163 aa9.38□□□□□ -0.91
CCDC88A-201ENST00000263630 IGLV5-48A0A075B6I7 105 aa9.38□□□□□ -0.91
CCDC88A-201ENST00000263630 LINC00336Q6ZUF6 198 aa9.37□□□□□ -0.91
CCDC88A-201ENST00000263630 C9orf92A6NGG3 77 aa9.37□□□□□ -0.91
CCDC88A-201ENST00000263630 CAMK2N1Q7Z7J9 78 aa9.36□□□□□ -0.91
CCDC88A-201ENST00000263630 KCNQ1DNQ9H478 68 aa9.35□□□□□ -0.91
CCDC88A-201ENST00000263630 IGFL1Q6UW32 110 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms