RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 RETNQ9HD89 108 aa7.59□□□□□ -1.19
CD44-201ENST00000263398 A0A0U1RQV1 116 aa7.59□□□□□ -1.2
CD44-201ENST00000263398 F8WDY8 70 aa7.58□□□□□ -1.2
CD44-201ENST00000263398 C2orf48Q96LS8 159 aa7.58□□□□□ -1.2
CD44-201ENST00000263398 CDIP1Q9H305 208 aa7.58□□□□□ -1.2
CD44-201ENST00000263398 FAM30AQ9NZY2 134 aa7.58□□□□□ -1.2
CD44-201ENST00000263398 M0R2N4 97 aa7.58□□□□□ -1.2
CD44-201ENST00000263398 IGHV3OR16-9A0A0B4J2B5 98 aa7.58□□□□□ -1.2
CD44-201ENST00000263398 LINC00575Q6W349 94 aa7.58□□□□□ -1.2
CD44-201ENST00000263398 LINC00846Q9NV44 126 aa7.57□□□□□ -1.2
CD44-201ENST00000263398 PTPRBP23467 1997 aa7.57□□□□□ -1.2
CD44-201ENST00000263398 IGLV9-49A0A0B4J1Y8 123 aa7.57□□□□□ -1.2
CD44-201ENST00000263398 C10orf25Q5T742 122 aa7.57□□□□□ -1.2
CD44-201ENST00000263398 Q8N2B8 174 aa7.57□□□□□ -1.2
CD44-201ENST00000263398 F8P00451 2351 aa7.56□□□□□ -1.2
CD44-201ENST00000263398 REG3GQ6UW15 175 aa7.56□□□□□ -1.2
CD44-201ENST00000263398 LYPD5Q6UWN5 251 aa7.56□□□□□ -1.2
CD44-201ENST00000263398 SERP1Q9Y6X1 66 aa7.56□□□□□ -1.2
CD44-201ENST00000263398 HRCT1Q6UXD1 115 aa7.56□□□□□ -1.2
CD44-201ENST00000263398 TRBV7-7A0A0K0K1E9 115 aa7.55□□□□□ -1.2
CD44-201ENST00000263398 Q6ZVQ6 151 aa7.55□□□□□ -1.2
CD44-201ENST00000263398 PRR15LQ9BU68 103 aa7.54□□□□□ -1.2
CD44-201ENST00000263398 LINC00208Q96KT6 92 aa7.54□□□□□ -1.2
CD44-201ENST00000263398 IGLV5-45A0A087WSX0 123 aa7.54□□□□□ -1.2
CD44-201ENST00000263398 A6NED7 52 aa7.54□□□□□ -1.2
CD44-201ENST00000263398 SMCPP49901 116 aaPredicted RBP7.54□□□□□ -1.2
CD44-201ENST00000263398 DMXL2Q8TDJ6 3036 aa7.53□□□□□ -1.2
CD44-201ENST00000263398 A8MTW9 85 aa7.53□□□□□ -1.2
CD44-201ENST00000263398 PRO0461Q9UI25 63 aa7.53□□□□□ -1.2
CD44-201ENST00000263398 PRYO14603 147 aa7.52□□□□□ -1.2
CD44-201ENST00000263398 Q6ZRU5 148 aa7.52□□□□□ -1.21
CD44-201ENST00000263398 K7ERS5 55 aa7.51□□□□□ -1.21
CD44-201ENST00000263398 LINC01547P58512 204 aaPredicted RBP7.51□□□□□ -1.21
CD44-201ENST00000263398 ADGRG4Q8IZF6 3080 aa7.5□□□□□ -1.21
CD44-201ENST00000263398 LOC400499M0QZD8 3231 aa7.5□□□□□ -1.21
CD44-201ENST00000263398 MUC3AQ02505 3323 aa7.5□□□□□ -1.21
CD44-201ENST00000263398 A0A087WSZ3 146 aa7.5□□□□□ -1.21
CD44-201ENST00000263398 NUPR2A6NF83 97 aa7.5□□□□□ -1.21
CD44-201ENST00000263398 LY6G6CO95867 125 aa7.49□□□□□ -1.21
CD44-201ENST00000263398 KLK9Q2XQG4 91 aa7.49□□□□□ -1.21
CD44-201ENST00000263398 TMEM254Q8TBM7 123 aa7.49□□□□□ -1.21
CD44-201ENST00000263398 DMXL1Q9Y485 3027 aa7.49□□□□□ -1.21
CD44-201ENST00000263398 Q9BRP9 147 aa7.49□□□□□ -1.21
CD44-201ENST00000263398 FHL3Q13643 280 aa7.49□□□□□ -1.21
CD44-201ENST00000263398 Q9UF83 564 aa7.49□□□□□ -1.21
CD44-201ENST00000263398 SOSTDC1Q6X4U4 206 aa7.48□□□□□ -1.21
CD44-201ENST00000263398 CXCL6P80162 114 aa7.48□□□□□ -1.21
CD44-201ENST00000263398 ESRGQ1W209 222 aa7.47□□□□□ -1.21
CD44-201ENST00000263398 ATMQ13315 3056 aa7.47□□□□□ -1.21
CD44-201ENST00000263398 SBSPONQ8IVN8 264 aa7.47□□□□□ -1.21
CD44-201ENST00000263398 WDFY3Q8IZQ1 3526 aa7.46□□□□□ -1.22
CD44-201ENST00000263398 CFAP46Q8IYW2 2715 aa7.45□□□□□ -1.22
CD44-201ENST00000263398 CFAP47Q6ZTR5 3102 aa7.45□□□□□ -1.22
CD44-201ENST00000263398 C1orf195Q5TG92 126 aa7.44□□□□□ -1.22
CD44-201ENST00000263398 FAM218AQ96MZ4 157 aa7.44□□□□□ -1.22
CD44-201ENST00000263398 ZZEF1O43149 2961 aa7.44□□□□□ -1.22
CD44-201ENST00000263398 LINC01556Q5JQF7 62 aa7.44□□□□□ -1.22
CD44-201ENST00000263398 C22orf24Q9Y442 160 aa7.44□□□□□ -1.22
CD44-201ENST00000263398 IGHV6-1A0A0B4J1U7 121 aa7.44□□□□□ -1.22
CD44-201ENST00000263398 SPATA3Q8NHX4 192 aa7.44□□□□□ -1.22
CD44-201ENST00000263398 USP24Q9UPU5 2620 aa7.43□□□□□ -1.22
CD44-201ENST00000263398 CIRBP-AS1Q8TBR5 109 aa7.43□□□□□ -1.22
CD44-201ENST00000263398 HCG22E2RYF7 251 aa7.42□□□□□ -1.22
CD44-201ENST00000263398 PRLHP81277 87 aa7.42□□□□□ -1.22
CD44-201ENST00000263398 C6orf48Q9UBA6 75 aa7.42□□□□□ -1.22
CD44-201ENST00000263398 BCE1O60756 84 aa7.42□□□□□ -1.22
CD44-201ENST00000263398 CRYGAP11844 174 aa7.42□□□□□ -1.22
CD44-201ENST00000263398 DEFB116Q30KQ4 102 aa7.42□□□□□ -1.22
CD44-201ENST00000263398 X6R8D5 127 aa7.42□□□□□ -1.22
CD44-201ENST00000263398 COL27A1Q8IZC6 1860 aaPredicted RBP7.41□□□□□ -1.22
CD44-201ENST00000263398 H0Y9P7 68 aa7.41□□□□□ -1.22
CD44-201ENST00000263398 KIAA0087Q14695 138 aa7.41□□□□□ -1.22
CD44-201ENST00000263398 TRBV7-6A0A0J9YX20 115 aa7.41□□□□□ -1.22
CD44-201ENST00000263398 SMCR5Q8TEV8 140 aa7.41□□□□□ -1.22
CD44-201ENST00000263398 IGLV5-52A0A0A0MRZ9 124 aa7.4□□□□□ -1.22
CD44-201ENST00000263398 FLNAP21333 2647 aaKnown RBP7.4□□□□□ -1.23
CD44-201ENST00000263398 DMDP11532 3685 aa7.4□□□□□ -1.23
CD44-201ENST00000263398 H3BNG1 76 aa7.4□□□□□ -1.23
CD44-201ENST00000263398 hDV103S1A0JD37 113 aa7.39□□□□□ -1.23
CD44-201ENST00000263398 PCOTHQ58A44 107 aa7.39□□□□□ -1.23
CD44-201ENST00000263398 A0A1B0GW54 56 aa7.39□□□□□ -1.23
CD44-201ENST00000263398 LITAFQ99732 161 aa7.39□□□□□ -1.23
CD44-201ENST00000263398 KALRNO60229 2985 aa7.38□□□□□ -1.23
CD44-201ENST00000263398 LINC00167Q96N53 147 aa7.38□□□□□ -1.23
CD44-201ENST00000263398 COL12A1Q99715 3063 aa7.38□□□□□ -1.23
CD44-201ENST00000263398 PMAIP1Q13794 54 aa7.38□□□□□ -1.23
CD44-201ENST00000263398 FSHBP01225 129 aa7.37□□□□□ -1.23
CD44-201ENST00000263398 ITPR3Q14573 2671 aa7.37□□□□□ -1.23
CD44-201ENST00000263398 ELOF1P60002 83 aaKnown RBP7.37□□□□□ -1.23
CD44-201ENST00000263398 ASPMQ8IZT6 3477 aa7.36□□□□□ -1.23
CD44-201ENST00000263398 PSPHP1O15172 72 aa7.36□□□□□ -1.23
CD44-201ENST00000263398 Q6ZQT0 140 aa7.36□□□□□ -1.23
CD44-201ENST00000263398 LRBAP50851 2863 aa7.35□□□□□ -1.23
CD44-201ENST00000263398 LOC110117498A0A087WWA1 95 aa7.35□□□□□ -1.23
CD44-201ENST00000263398 SMIM29Q86T20 159 aa7.35□□□□□ -1.23
CD44-201ENST00000263398 C1orf134Q5TEV5 83 aa7.35□□□□□ -1.23
CD44-201ENST00000263398 MGAM2Q2M2H8 2515 aa7.34□□□□□ -1.23
CD44-201ENST00000263398 FLNCQ14315 2725 aa7.34□□□□□ -1.23
CD44-201ENST00000263398 C1orf64Q8NEQ6 169 aa7.34□□□□□ -1.23
CD44-201ENST00000263398 HELZ2Q9BYK8 2649 aaKnown RBP7.34□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms