RNA–Protein interactions for RNA: ENST00000254066.9

RARA-201, Transcript of retinoic acid receptor alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RARA, Length 2,414 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RARA-201ENST00000254066 LOC100131303A0A0U1RQF7 123 aa14.09□□□□□ -0.15
RARA-201ENST00000254066 C4orf3Q8WVX3 66 aa14.09□□□□□ -0.15
RARA-201ENST00000254066 TRGV2A0A075B6R0 118 aa14.07□□□□□ -0.16
RARA-201ENST00000254066 RNASE1P07998 156 aaKnown RBP14.07□□□□□ -0.16
RARA-201ENST00000254066 LINC00474Q9P2X8 69 aa14.07□□□□□ -0.16
RARA-201ENST00000254066 MIFP14174 115 aa14.07□□□□□ -0.16
RARA-201ENST00000254066 C18orf65Q6ZTR6 163 aa14.06□□□□□ -0.16
RARA-201ENST00000254066 Q8N3U1 123 aa14.06□□□□□ -0.16
RARA-201ENST00000254066 TRGV4A0A0C4DH28 118 aa14.06□□□□□ -0.16
RARA-201ENST00000254066 PRR3P79522 188 aaKnown RBP14.06□□□□□ -0.16
RARA-201ENST00000254066 C11orf68Q9H3H3 251 aaKnown RBP14.06□□□□□ -0.16
RARA-201ENST00000254066 IGHV4-28A0A0C4DH34 117 aa14.05□□□□□ -0.16
RARA-201ENST00000254066 MUC7Q8TAX7 377 aa14.05□□□□□ -0.16
RARA-201ENST00000254066 A0A1B0GUV1 79 aa14.04□□□□□ -0.16
RARA-201ENST00000254066 FLNAP21333 2647 aaKnown RBP14.03□□□□□ -0.16
RARA-201ENST00000254066 MTORP42345 2549 aa14.02□□□□□ -0.16
RARA-201ENST00000254066 Q6YL49 198 aa14.02□□□□□ -0.16
RARA-201ENST00000254066 M0R2N4 97 aa14.01□□□□□ -0.17
RARA-201ENST00000254066 TM2D3Q9BRN9 247 aa14.01□□□□□ -0.17
RARA-201ENST00000254066 DSCR9P59020 149 aa14.01□□□□□ -0.17
RARA-201ENST00000254066 ACANP16112 2415 aa14□□□□□ -0.17
RARA-201ENST00000254066 KIAA0087Q14695 138 aa14□□□□□ -0.17
RARA-201ENST00000254066 NREPQ16612 68 aa14□□□□□ -0.17
RARA-201ENST00000254066 LINC01356Q8N9X3 169 aa14□□□□□ -0.17
RARA-201ENST00000254066 SMR3AQ99954 134 aa14□□□□□ -0.17
RARA-201ENST00000254066 ZNF469Q96JG9 3925 aaPredicted RBP13.99□□□□□ -0.17
RARA-201ENST00000254066 TMEM254Q8TBM7 123 aa13.99□□□□□ -0.17
RARA-201ENST00000254066 CMC4P56277 68 aaPredicted RBP13.99□□□□□ -0.17
RARA-201ENST00000254066 SETD2Q9BYW2 2564 aaPredicted RBP13.97□□□□□ -0.17
RARA-201ENST00000254066 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.97□□□□□ -0.177e-7■■■■□ 25.6
RARA-201ENST00000254066 SPATA3Q8NHX4 192 aa13.96□□□□□ -0.17
RARA-201ENST00000254066 MAP1AP78559 2803 aaPredicted RBP13.96□□□□□ -0.18
RARA-201ENST00000254066 KHDC1LQ5JSQ8 128 aa13.94□□□□□ -0.18
RARA-201ENST00000254066 NF1P21359 2839 aa13.94□□□□□ -0.18
RARA-201ENST00000254066 BPY2O14599 106 aa13.94□□□□□ -0.18
RARA-201ENST00000254066 CD164L2Q6UWJ8 174 aa13.94□□□□□ -0.18
RARA-201ENST00000254066 IGLV6-57P01721 117 aa13.93□□□□□ -0.18
RARA-201ENST00000254066 GIG44P09565 113 aaPredicted RBP13.93□□□□□ -0.18
RARA-201ENST00000254066 IGHV4-31P0DP07 118 aa13.93□□□□□ -0.18
RARA-201ENST00000254066 Q6ZQY7 126 aa13.93□□□□□ -0.18
RARA-201ENST00000254066 FSHBP01225 129 aa13.92□□□□□ -0.18
RARA-201ENST00000254066 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP13.92□□□□□ -0.18
RARA-201ENST00000254066 Q8NDZ9 215 aa13.91□□□□□ -0.18
RARA-201ENST00000254066 VPS13CQ709C8 3753 aa13.9□□□□□ -0.18
RARA-201ENST00000254066 CCL24O00175 119 aa13.9□□□□□ -0.18
RARA-201ENST00000254066 PRYO14603 147 aa13.89□□□□□ -0.19
RARA-201ENST00000254066 KRTAP1-1Q07627 177 aa13.89□□□□□ -0.19
RARA-201ENST00000254066 ESRGQ1W209 222 aa13.89□□□□□ -0.19
RARA-201ENST00000254066 INAFM1C9JVW0 142 aa13.88□□□□□ -0.19
RARA-201ENST00000254066 MPLKIPQ8TAP9 179 aa13.88□□□□□ -0.19
RARA-201ENST00000254066 HIVEP2P31629 2446 aa13.87□□□□□ -0.19
RARA-201ENST00000254066 NSD1Q96L73 2696 aaPredicted RBP13.87□□□□□ -0.19
RARA-201ENST00000254066 CSNK1G2-AS1Q8NCQ2 148 aa13.86□□□□□ -0.19
RARA-201ENST00000254066 RBM12B-AS1Q9P1G2 102 aa13.86□□□□□ -0.19
RARA-201ENST00000254066 NIPBLQ6KC79 2804 aaeCLIP13.85□□□□□ -0.19
RARA-201ENST00000254066 COX7BP24311 80 aa13.85□□□□□ -0.19
RARA-201ENST00000254066 DAD1P61803 113 aa13.85□□□□□ -0.19
RARA-201ENST00000254066 OCR1Q9BZK8 76 aa13.85□□□□□ -0.19
RARA-201ENST00000254066 CR1P17927 2039 aa13.85□□□□□ -0.19
RARA-201ENST00000254066 FUSP35637 526 aaKnown RBP eCLIP13.84□□□□□ -0.19
RARA-201ENST00000254066 C9orf116Q5BN46 136 aaPredicted RBP13.84□□□□□ -0.19
RARA-201ENST00000254066 MAPK1IP1LQ8NDC0 245 aa13.84□□□□□ -0.19
RARA-201ENST00000254066 DIRC1Q969H9 104 aa13.84□□□□□ -0.19
RARA-201ENST00000254066 FN1P02751 2386 aaKnown RBP13.84□□□□□ -0.19
RARA-201ENST00000254066 FAM229BQ4G0N7 80 aa13.84□□□□□ -0.19
RARA-201ENST00000254066 LINC00269Q8N2A0 174 aa13.83□□□□□ -0.19
RARA-201ENST00000254066 Q6ZTC4 211 aa13.83□□□□□ -0.2
RARA-201ENST00000254066 SCXQ7RTU7 201 aa13.83□□□□□ -0.2
RARA-201ENST00000254066 CHCHD10Q8WYQ3 142 aaPredicted RBP13.83□□□□□ -0.2
RARA-201ENST00000254066 A0A0J9YWU9 116 aa13.82□□□□□ -0.2
RARA-201ENST00000254066 IGHV4-30-4P0DP06 118 aa13.82□□□□□ -0.2
RARA-201ENST00000254066 GYPEP15421 78 aa13.82□□□□□ -0.2
RARA-201ENST00000254066 CLPSL2Q6UWE3 100 aa13.81□□□□□ -0.2
RARA-201ENST00000254066 C11orf45Q8TAV5 145 aa13.81□□□□□ -0.2
RARA-201ENST00000254066 CSPG4Q6UVK1 2322 aa13.81□□□□□ -0.2
RARA-201ENST00000254066 LINC00612Q8N6U2 182 aa13.81□□□□□ -0.2
RARA-201ENST00000254066 IGKV4-1P06312 121 aa13.8□□□□□ -0.2
RARA-201ENST00000254066 KTN1-AS1Q86SY8 53 aa13.78□□□□□ -0.2
RARA-201ENST00000254066 TLN2Q9Y4G6 2542 aa13.77□□□□□ -0.21
RARA-201ENST00000254066 APOC4P55056 127 aa13.76□□□□□ -0.21
RARA-201ENST00000254066 ELOF1P60002 83 aaKnown RBP13.76□□□□□ -0.21
RARA-201ENST00000254066 LINC01006Q8NI28 216 aa13.76□□□□□ -0.21
RARA-201ENST00000254066 ZANQ9Y493 2812 aa13.75□□□□□ -0.21
RARA-201ENST00000254066 GVQW2A0A096LPI5 108 aaPredicted RBP13.75□□□□□ -0.21
RARA-201ENST00000254066 REG3AQ06141 175 aa13.75□□□□□ -0.21
RARA-201ENST00000254066 PRO0255Q9UI72 69 aa13.75□□□□□ -0.21
RARA-201ENST00000254066 ZNF73O43830 326 aaPredicted RBP13.74□□□□□ -0.21
RARA-201ENST00000254066 C19orf73Q9NVV2 129 aa13.74□□□□□ -0.21
RARA-201ENST00000254066 CELA1Q9UNI1 258 aa13.74□□□□□ -0.21
RARA-201ENST00000254066 SPAG11BQ08648 103 aa13.73□□□□□ -0.21
RARA-201ENST00000254066 UNQ6190/PRO20217Q6UXQ8 127 aa13.73□□□□□ -0.21
RARA-201ENST00000254066 ESM1Q9NQ30 184 aa13.72□□□□□ -0.21
RARA-201ENST00000254066 C10orf25Q5T742 122 aa13.72□□□□□ -0.21
RARA-201ENST00000254066 DEFB130BP0DP73 79 aa13.71□□□□□ -0.21
RARA-201ENST00000254066 DEFB130AP0DP74 79 aa13.71□□□□□ -0.21
RARA-201ENST00000254066 ANGP03950 147 aaKnown RBP13.7□□□□□ -0.22
RARA-201ENST00000254066 Q1T7F1 81 aa13.7□□□□□ -0.22
RARA-201ENST00000254066 H3BS24 57 aa13.7□□□□□ -0.22
RARA-201ENST00000254066 LCE6AA0A183 80 aa13.69□□□□□ -0.22
RARA-201ENST00000254066 hDV103S1A0JD37 113 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 92.7 ms