RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 IGLV5-45A0A087WSX0 123 aa9.72□□□□□ -0.85
CLN3-242ENST00000635958 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.71□□□□□ -0.85
CLN3-242ENST00000635958 IGKV2-29A2NJV5 120 aaPredicted RBP9.71□□□□□ -0.85
CLN3-242ENST00000635958 NUPR2A6NF83 97 aa9.71□□□□□ -0.85
CLN3-242ENST00000635958 Q6Q795 121 aa9.71□□□□□ -0.85
CLN3-242ENST00000635958 FAM19A3Q7Z5A8 133 aa9.71□□□□□ -0.85
CLN3-242ENST00000635958 CSDC2Q9Y534 153 aaKnown RBP9.71□□□□□ -0.85
CLN3-242ENST00000635958 DNAH7Q8WXX0 4024 aa9.71□□□□□ -0.86
CLN3-242ENST00000635958 XGP55808 180 aa9.7□□□□□ -0.86
CLN3-242ENST00000635958 ESRGQ1W209 222 aa9.7□□□□□ -0.86
CLN3-242ENST00000635958 FAM104AQ969W3 186 aa9.7□□□□□ -0.86
CLN3-242ENST00000635958 NDUFA1O15239 70 aa9.7□□□□□ -0.86
CLN3-242ENST00000635958 EIF4EBP3O60516 100 aaPredicted RBP9.7□□□□□ -0.86
CLN3-242ENST00000635958 MT-ATP8P03928 68 aa9.7□□□□□ -0.86
CLN3-242ENST00000635958 PRSS2P07478 247 aa9.7□□□□□ -0.86
CLN3-242ENST00000635958 HERVK_113P63121 156 aa9.69□□□□□ -0.86
CLN3-242ENST00000635958 CHCHD5Q9BSY4 110 aa9.69□□□□□ -0.86
CLN3-242ENST00000635958 KLK5Q9Y337 293 aaPredicted RBP9.69□□□□□ -0.86
CLN3-242ENST00000635958 IGHV3-64A0A075B6Q5 118 aa9.68□□□□□ -0.86
CLN3-242ENST00000635958 UBE2L6O14933 153 aa9.68□□□□□ -0.86
CLN3-242ENST00000635958 APLNQ9ULZ1 77 aa9.68□□□□□ -0.86
CLN3-242ENST00000635958 A0A1B0GUV1 79 aa9.68□□□□□ -0.86
CLN3-242ENST00000635958 TRIAP1O43715 76 aa9.68□□□□□ -0.86
CLN3-242ENST00000635958 DGAT2L7PQ6IED9 249 aa9.68□□□□□ -0.86
CLN3-242ENST00000635958 UBE2WQ96B02 151 aa9.68□□□□□ -0.86
CLN3-242ENST00000635958 CSMD3Q7Z407 3707 aa9.67□□□□□ -0.86
CLN3-242ENST00000635958 TRAV8-4A0A0B4J246 113 aa9.67□□□□□ -0.86
CLN3-242ENST00000635958 SNCGO76070 127 aa9.67□□□□□ -0.86
CLN3-242ENST00000635958 GAGE6Q13070 117 aa9.67□□□□□ -0.86
CLN3-242ENST00000635958 NTN5Q8WTR8 489 aaPredicted RBP9.67□□□□□ -0.86
CLN3-242ENST00000635958 FAM240AA0A1B0GVK7 77 aa9.66□□□□□ -0.86
CLN3-242ENST00000635958 H7C2G1 150 aa9.66□□□□□ -0.86
CLN3-242ENST00000635958 C2orf82Q6UX34 121 aa9.66□□□□□ -0.86
CLN3-242ENST00000635958 WWC2-AS2Q96NR7 200 aa9.66□□□□□ -0.86
CLN3-242ENST00000635958 CDC42SE2Q9NRR3 84 aa9.66□□□□□ -0.86
CLN3-242ENST00000635958 TRAV8-3A0A0A6YYJ7 113 aa9.65□□□□□ -0.86
CLN3-242ENST00000635958 LST1O00453 97 aa9.65□□□□□ -0.86
CLN3-242ENST00000635958 HERV-K104P63124 156 aa9.65□□□□□ -0.86
CLN3-242ENST00000635958 GAGE2BQ13066 116 aa9.65□□□□□ -0.86
CLN3-242ENST00000635958 GAGE2EQ4V326 116 aa9.65□□□□□ -0.86
CLN3-242ENST00000635958 MUC7Q8TAX7 377 aa9.65□□□□□ -0.86
CLN3-242ENST00000635958 GAGE2DQ9UEU5 116 aa9.65□□□□□ -0.86
CLN3-242ENST00000635958 IGLV5-39A0A0G2JS06 123 aa9.64□□□□□ -0.87
CLN3-242ENST00000635958 CCL18P55774 89 aa9.64□□□□□ -0.87
CLN3-242ENST00000635958 ADAMTSL4-AS1Q5T5F5 129 aa9.64□□□□□ -0.87
CLN3-242ENST00000635958 TMEM101Q96IK0 257 aa9.64□□□□□ -0.87
CLN3-242ENST00000635958 LINC00588Q9Y4M8 146 aa9.64□□□□□ -0.87
CLN3-242ENST00000635958 ACYP1P07311 99 aa9.63□□□□□ -0.87
CLN3-242ENST00000635958 IGLV4-60A0A075B6I1 120 aa9.63□□□□□ -0.87
CLN3-242ENST00000635958 ANAPC13Q9BS18 74 aa9.63□□□□□ -0.87
CLN3-242ENST00000635958 UPK3BQ9BT76 320 aa9.63□□□□□ -0.87
CLN3-242ENST00000635958 TENM2Q9NT68 2774 aa9.63□□□□□ -0.87
CLN3-242ENST00000635958 PLECQ15149 4684 aaKnown RBP9.62□□□□□ -0.87
CLN3-242ENST00000635958 WFDC10BQ8IUB3 73 aa9.62□□□□□ -0.87
CLN3-242ENST00000635958 CDKN2A-AS1Q9UH64 79 aa9.61□□□□□ -0.87
CLN3-242ENST00000635958 STARD9Q9P2P6 4700 aa9.6□□□□□ -0.87
CLN3-242ENST00000635958 LINC01556Q5JQF7 62 aa9.6□□□□□ -0.87
CLN3-242ENST00000635958 LINC00308Q8TCZ7 52 aa9.6□□□□□ -0.87
CLN3-242ENST00000635958 DNAH10OSP0CZ25 163 aa9.59□□□□□ -0.87
CLN3-242ENST00000635958 RNASE13Q5GAN3 156 aaKnown RBP9.59□□□□□ -0.87
CLN3-242ENST00000635958 TTC32Q5I0X7 151 aa9.59□□□□□ -0.87
CLN3-242ENST00000635958 Q8N3U1 123 aa9.59□□□□□ -0.87
CLN3-242ENST00000635958 KMT2CQ8NEZ4 4911 aaKnown RBP9.59□□□□□ -0.87
CLN3-242ENST00000635958 COX7A2LO14548 114 aa9.59□□□□□ -0.88
CLN3-242ENST00000635958 LINC00242Q5T6M2 205 aa9.58□□□□□ -0.88
CLN3-242ENST00000635958 TRACP01848 142 aa9.57□□□□□ -0.88
CLN3-242ENST00000635958 PRR34Q9NV39 138 aa9.57□□□□□ -0.88
CLN3-242ENST00000635958 TEX49A0A1B0GTD5 131 aa9.56□□□□□ -0.88
CLN3-242ENST00000635958 C3orf84H3BNL1 204 aa9.56□□□□□ -0.88
CLN3-242ENST00000635958 ANGP03950 147 aaKnown RBP9.56□□□□□ -0.88
CLN3-242ENST00000635958 Q9H8V8 135 aa9.56□□□□□ -0.88
CLN3-242ENST00000635958 LINC00269Q8N2A0 174 aa9.56□□□□□ -0.88
CLN3-242ENST00000635958 IMUPQ9GZP8 106 aa9.56□□□□□ -0.88
CLN3-242ENST00000635958 SMIM1B2RUZ4 78 aa9.55□□□□□ -0.88
CLN3-242ENST00000635958 NDUFV3P56181 108 aaKnown RBP9.55□□□□□ -0.88
CLN3-242ENST00000635958 TRAV13-2A0A0B4J235 113 aa9.54□□□□□ -0.88
CLN3-242ENST00000635958 LINC00959A0A1B0GUT2 108 aa9.54□□□□□ -0.88
CLN3-242ENST00000635958 REG3AQ06141 175 aa9.54□□□□□ -0.88
CLN3-242ENST00000635958 CASC10Q5T4H9 136 aa9.54□□□□□ -0.88
CLN3-242ENST00000635958 ZNF625Q96I27 306 aaPredicted RBP9.54□□□□□ -0.88
CLN3-242ENST00000635958 KLK12Q9UKR0 248 aa9.54□□□□□ -0.88
CLN3-242ENST00000635958 VPS13DQ5THJ4 4388 aa9.54□□□□□ -0.88
CLN3-242ENST00000635958 TRAV13-1A0A0B4J241 112 aa9.54□□□□□ -0.88
CLN3-242ENST00000635958 COX6A2Q02221 97 aa9.54□□□□□ -0.88
CLN3-242ENST00000635958 MEIG1Q5JSS6 88 aa9.53□□□□□ -0.88
CLN3-242ENST00000635958 ENHOQ6UWT2 76 aa9.53□□□□□ -0.88
CLN3-242ENST00000635958 UBE2DNLQ8IWF7 75 aa9.53□□□□□ -0.88
CLN3-242ENST00000635958 CLEC2BQ92478 149 aa9.53□□□□□ -0.88
CLN3-242ENST00000635958 TRBV7-7A0A0K0K1E9 115 aa9.52□□□□□ -0.89
CLN3-242ENST00000635958 DNAH1Q9P2D7 4330 aa9.51□□□□□ -0.89
CLN3-242ENST00000635958 IBA57-AS1B1ANH7 110 aa9.51□□□□□ -0.89
CLN3-242ENST00000635958 NPC2P61916 151 aa9.51□□□□□ -0.89
CLN3-242ENST00000635958 SS18Q15532 418 aa9.51□□□□□ -0.89
CLN3-242ENST00000635958 IGKV3OR2-268A0A0C4DH90 116 aa9.5□□□□□ -0.89
CLN3-242ENST00000635958 INAFM2P0DMQ5 153 aa9.5□□□□□ -0.89
CLN3-242ENST00000635958 CLPSL2Q6UWE3 100 aa9.5□□□□□ -0.89
CLN3-242ENST00000635958 RPL28P46779 137 aaKnown RBP9.49□□□□□ -0.89
CLN3-242ENST00000635958 LYSTQ99698 3801 aa9.49□□□□□ -0.89
CLN3-242ENST00000635958 IGHV3OR16-9A0A0B4J2B5 98 aa9.49□□□□□ -0.89
CLN3-242ENST00000635958 CRPP02741 224 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 82.9 ms