RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 C6orf48Q9UBA6 75 aa13.11□□□□□ -0.31
CLN3-240ENST00000631023 H3BRM9 83 aa13.1□□□□□ -0.31
CLN3-240ENST00000631023 SCO1O75880 301 aa13.1□□□□□ -0.31
CLN3-240ENST00000631023 C2orf82Q6UX34 121 aa13.1□□□□□ -0.31
CLN3-240ENST00000631023 IGLC3P0DOY3 106 aa13.09□□□□□ -0.31
CLN3-240ENST00000631023 SMIM1B2RUZ4 78 aa13.08□□□□□ -0.32
CLN3-240ENST00000631023 TLX1NBP0CAT3 122 aa13.08□□□□□ -0.32
CLN3-240ENST00000631023 RPL37AP61513 92 aaKnown RBP13.08□□□□□ -0.32
CLN3-240ENST00000631023 C7orf33Q8WU49 177 aa13.07□□□□□ -0.32
CLN3-240ENST00000631023 IFI27L1Q96BM0 104 aa13.07□□□□□ -0.32
CLN3-240ENST00000631023 CXCL5P42830 114 aa13.07□□□□□ -0.32
CLN3-240ENST00000631023 FAM19A2Q8N3H0 131 aa13.07□□□□□ -0.32
CLN3-240ENST00000631023 FLG2Q5D862 2391 aaPredicted RBP13.06□□□□□ -0.32
CLN3-240ENST00000631023 SERF1AO75920 110 aa13.06□□□□□ -0.32
CLN3-240ENST00000631023 SPINK8P0C7L1 97 aa13.05□□□□□ -0.32
CLN3-240ENST00000631023 COX7B2Q8TF08 81 aa13.05□□□□□ -0.32
CLN3-240ENST00000631023 F8VRH5 84 aa13.03□□□□□ -0.32
CLN3-240ENST00000631023 Q6ZRP5 223 aa13.03□□□□□ -0.32
CLN3-240ENST00000631023 CHTOPQ9Y3Y2 248 aaKnown RBP13.03□□□□□ -0.32
CLN3-240ENST00000631023 TRAV12-1A0A0B4J245 112 aa13.03□□□□□ -0.32
CLN3-240ENST00000631023 NDUFC2-KCTD14E9PQ53 114 aa13.03□□□□□ -0.32
CLN3-240ENST00000631023 ZNF22P17026 224 aaPredicted RBP13.02□□□□□ -0.33
CLN3-240ENST00000631023 KRTAP10-4P60372 401 aaPredicted RBP13.02□□□□□ -0.33
CLN3-240ENST00000631023 GAGE2EQ4V326 116 aa13.02□□□□□ -0.33
CLN3-240ENST00000631023 GAGE2DQ9UEU5 116 aa13.02□□□□□ -0.33
CLN3-240ENST00000631023 C11orf86A6NJI1 115 aa13.01□□□□□ -0.33
CLN3-240ENST00000631023 LEPROTL1O95214 131 aa13.01□□□□□ -0.33
CLN3-240ENST00000631023 C9orf116Q5BN46 136 aaPredicted RBP13.01□□□□□ -0.33
CLN3-240ENST00000631023 LINC00310P59036 64 aa13□□□□□ -0.33
CLN3-240ENST00000631023 TMEM170BQ5T4T1 132 aa13□□□□□ -0.33
CLN3-240ENST00000631023 A0A1W2PNN7 141 aa12.99□□□□□ -0.33
CLN3-240ENST00000631023 HSPB8Q9UJY1 196 aa12.98□□□□□ -0.33
CLN3-240ENST00000631023 IGLV5-39A0A0G2JS06 123 aa12.98□□□□□ -0.33
CLN3-240ENST00000631023 NUPR1O60356 82 aa12.97□□□□□ -0.33
CLN3-240ENST00000631023 HIST1H2BKO60814 126 aa12.97□□□□□ -0.33
CLN3-240ENST00000631023 HIST1H2BJP06899 126 aa12.97□□□□□ -0.33
CLN3-240ENST00000631023 HIST1H2BOP23527 126 aa12.97□□□□□ -0.33
CLN3-240ENST00000631023 HIST1H2BBP33778 126 aa12.97□□□□□ -0.33
CLN3-240ENST00000631023 HIST1H2BDP58876 126 aa12.97□□□□□ -0.33
CLN3-240ENST00000631023 HIST1H2BCP62807 126 aa12.97□□□□□ -0.33
CLN3-240ENST00000631023 HIST2H2BEQ16778 126 aa12.97□□□□□ -0.33
CLN3-240ENST00000631023 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.97□□□□□ -0.33
CLN3-240ENST00000631023 HIST1H2BHQ93079 126 aa12.97□□□□□ -0.33
CLN3-240ENST00000631023 HIST1H2BNQ99877 126 aa12.97□□□□□ -0.33
CLN3-240ENST00000631023 HIST1H2BMQ99879 126 aa12.97□□□□□ -0.33
CLN3-240ENST00000631023 S100A1P23297 94 aa12.96□□□□□ -0.33
CLN3-240ENST00000631023 H0Y8G0 127 aa12.94□□□□□ -0.34
CLN3-240ENST00000631023 FABP4P15090 132 aa12.94□□□□□ -0.34
CLN3-240ENST00000631023 FAM168BA1KXE4 195 aa12.92□□□□□ -0.34
CLN3-240ENST00000631023 ODF1Q14990 250 aa12.91□□□□□ -0.34
CLN3-240ENST00000631023 SFTA2Q6UW10 78 aa12.91□□□□□ -0.34
CLN3-240ENST00000631023 FAM19A5Q7Z5A7 132 aaPredicted RBP12.91□□□□□ -0.34
CLN3-240ENST00000631023 TMEM223A0PJW6 202 aa12.9□□□□□ -0.34
CLN3-240ENST00000631023 PRR3P79522 188 aaKnown RBP12.9□□□□□ -0.34
CLN3-240ENST00000631023 C9orf129Q5T035 196 aaKnown RBP12.9□□□□□ -0.34
CLN3-240ENST00000631023 PHF5AQ7RTV0 110 aaKnown RBP12.9□□□□□ -0.35
CLN3-240ENST00000631023 MAP1LC3CQ9BXW4 147 aa12.89□□□□□ -0.35
CLN3-240ENST00000631023 XAGE1AQ9HD64 81 aa12.89□□□□□ -0.35
CLN3-240ENST00000631023 ATP6V1G1O75348 118 aa12.87□□□□□ -0.35
CLN3-240ENST00000631023 PLNP26678 52 aa12.87□□□□□ -0.35
CLN3-240ENST00000631023 DMBT1Q9UGM3 2413 aaPredicted RBP12.87□□□□□ -0.35
CLN3-240ENST00000631023 HNRNPA3P51991 378 aaKnown RBP12.86□□□□□ -0.35
CLN3-240ENST00000631023 MYCBP2O75592 4640 aa12.86□□□□□ -0.35
CLN3-240ENST00000631023 M0QXV9 152 aa12.86□□□□□ -0.35
CLN3-240ENST00000631023 COX17Q14061 63 aa12.85□□□□□ -0.35
CLN3-240ENST00000631023 PKHD1L1Q86WI1 4243 aa12.84□□□□□ -0.35
CLN3-240ENST00000631023 DPM2O94777 84 aa12.84□□□□□ -0.35
CLN3-240ENST00000631023 PFN2P35080 140 aa12.84□□□□□ -0.35
CLN3-240ENST00000631023 KRTAP7-1Q8IUC3 87 aa12.84□□□□□ -0.35
CLN3-240ENST00000631023 ERG28Q9UKR5 140 aa12.84□□□□□ -0.35
CLN3-240ENST00000631023 COA6Q5JTJ3 125 aaKnown RBP12.83□□□□□ -0.36
CLN3-240ENST00000631023 ZNF625Q96I27 306 aaPredicted RBP12.83□□□□□ -0.36
CLN3-240ENST00000631023 PSORS1C2Q9UIG4 136 aa12.82□□□□□ -0.36
CLN3-240ENST00000631023 KRTAP29-1A8MX34 341 aaPredicted RBP12.81□□□□□ -0.36
CLN3-240ENST00000631023 J3QL48 77 aa12.81□□□□□ -0.36
CLN3-240ENST00000631023 IGKCP01834 107 aa12.81□□□□□ -0.36
CLN3-240ENST00000631023 UBE2BP63146 152 aa12.81□□□□□ -0.36
CLN3-240ENST00000631023 SERTAD4-AS1Q5TG53 156 aa12.81□□□□□ -0.36
CLN3-240ENST00000631023 OXTP01178 125 aa12.81□□□□□ -0.36
CLN3-240ENST00000631023 PMCHL2Q9BQD1 86 aa12.81□□□□□ -0.36
CLN3-240ENST00000631023 HERVK_113P61574 105 aa12.8□□□□□ -0.36
CLN3-240ENST00000631023 LBHQ53QV2 105 aaPredicted RBP12.8□□□□□ -0.36
CLN3-240ENST00000631023 C22orf24Q9Y442 160 aa12.8□□□□□ -0.36
CLN3-240ENST00000631023 SYS1-DBNDD2H3BUS1 97 aa12.79□□□□□ -0.36
CLN3-240ENST00000631023 PLA2G2DQ9UNK4 145 aa12.79□□□□□ -0.36
CLN3-240ENST00000631023 C1orf137Q5JT78 98 aa12.78□□□□□ -0.36
CLN3-240ENST00000631023 TP73-AS1Q9UF72 201 aa12.78□□□□□ -0.36
CLN3-240ENST00000631023 SPINK6Q6UWN8 80 aa12.77□□□□□ -0.36
CLN3-240ENST00000631023 PLEKHB2Q96CS7 222 aa12.77□□□□□ -0.36
CLN3-240ENST00000631023 LEPROTO15243 131 aa12.77□□□□□ -0.37
CLN3-240ENST00000631023 HERV-K104P63124 156 aa12.77□□□□□ -0.37
CLN3-240ENST00000631023 NDUFA12Q9UI09 145 aa12.77□□□□□ -0.37
CLN3-240ENST00000631023 LINC00158P58513 81 aa12.76□□□□□ -0.37
CLN3-240ENST00000631023 MRPL55Q7Z7F7 128 aaKnown RBP12.76□□□□□ -0.37
CLN3-240ENST00000631023 SND1-IT1Q9HBX3 110 aa12.76□□□□□ -0.37
CLN3-240ENST00000631023 MYMXA0A1B0GTQ4 84 aa12.75□□□□□ -0.37
CLN3-240ENST00000631023 LINC00587B1AMM8 73 aa12.75□□□□□ -0.37
CLN3-240ENST00000631023 SRSF9Q13242 221 aaKnown RBP eCLIP12.74□□□□□ -0.37
CLN3-240ENST00000631023 PET117Q6UWS5 81 aa12.74□□□□□ -0.37
CLN3-240ENST00000631023 KRTAP11-1Q8IUC1 163 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms