RNA–Protein interactions for RNA: ENST00000625716.2

TCF4-249, Transcript of transcription factor 4, humanhuman

TSL 1 (best)

Gene TCF4, Length 359 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-249ENST00000625716 FA2HQ7L5A8 372 aa4.03□□□□□ -1.76
TCF4-249ENST00000625716 SLC7A5P1Q8MH63 180 aa4.03□□□□□ -1.76
TCF4-249ENST00000625716 SCGB3A1Q96QR1 104 aa4.03□□□□□ -1.76
TCF4-249ENST00000625716 GEMIN7Q9H840 131 aaKnown RBP4.03□□□□□ -1.76
TCF4-249ENST00000625716 SMCO4Q9NRQ5 59 aa4.03□□□□□ -1.76
TCF4-249ENST00000625716 DNAH8Q96JB1 4490 aa4.02□□□□□ -1.77
TCF4-249ENST00000625716 A0A0J9YXV3 536 aa4.02□□□□□ -1.77
TCF4-249ENST00000625716 IGIPA6NJ69 53 aa4.02□□□□□ -1.77
TCF4-249ENST00000625716 S100A1P23297 94 aa4.02□□□□□ -1.77
TCF4-249ENST00000625716 UBE2D1P51668 147 aa4.02□□□□□ -1.77
TCF4-249ENST00000625716 HERVK_113P63121 156 aa4.02□□□□□ -1.77
TCF4-249ENST00000625716 C6orf226Q5I0X4 101 aa4.02□□□□□ -1.77
TCF4-249ENST00000625716 ERASQ7Z444 233 aa4.02□□□□□ -1.77
TCF4-249ENST00000625716 TOMM6Q96B49 74 aa4.02□□□□□ -1.77
TCF4-249ENST00000625716 PACRGQ96M98 296 aaPredicted RBP4.02□□□□□ -1.77
TCF4-249ENST00000625716 AMELXQ99217 191 aa4.02□□□□□ -1.77
TCF4-249ENST00000625716 TIMM17AQ99595 171 aa4.02□□□□□ -1.77
TCF4-249ENST00000625716 ALKBH7Q9BT30 221 aaPredicted RBP4.02□□□□□ -1.77
TCF4-249ENST00000625716 MRPL35Q9NZE8 188 aaKnown RBP4.02□□□□□ -1.77
TCF4-249ENST00000625716 TRAPPC1Q9Y5R8 145 aa4.02□□□□□ -1.77
TCF4-249ENST00000625716 VPS13BQ7Z7G8 4022 aa4.02□□□□□ -1.77
TCF4-249ENST00000625716 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.01□□□□□ -1.77
TCF4-249ENST00000625716 CKS1BP61024 79 aa4.01□□□□□ -1.77
TCF4-249ENST00000625716 ZC2HC1BQ5TFG8 222 aa4.01□□□□□ -1.77
TCF4-249ENST00000625716 UNQ6190/PRO20217Q6UXQ8 127 aa4.01□□□□□ -1.77
TCF4-249ENST00000625716 LINC01561Q8N1V8 128 aa4.01□□□□□ -1.77
TCF4-249ENST00000625716 TOMM7Q9P0U1 55 aa4.01□□□□□ -1.77
TCF4-249ENST00000625716 TRBV30A0A0K0K1B3 111 aa4□□□□□ -1.77
TCF4-249ENST00000625716 HNRNPA3P51991 378 aaKnown RBP4□□□□□ -1.77
TCF4-249ENST00000625716 GAGE2EQ4V326 116 aa4□□□□□ -1.77
TCF4-249ENST00000625716 C9orf116Q5BN46 136 aaPredicted RBP4□□□□□ -1.77
TCF4-249ENST00000625716 Q6ZRP5 223 aa4□□□□□ -1.77
TCF4-249ENST00000625716 LINC00173Q6ZV60 143 aa4□□□□□ -1.77
TCF4-249ENST00000625716 FAM19A3Q7Z5A8 133 aa4□□□□□ -1.77
TCF4-249ENST00000625716 GAGE2DQ9UEU5 116 aa4□□□□□ -1.77
TCF4-249ENST00000625716 SRRM2Q9UQ35 2752 aaKnown RBP4□□□□□ -1.77
TCF4-249ENST00000625716 A0A1W2PNN7 141 aa3.99□□□□□ -1.77
TCF4-249ENST00000625716 LINC00614P0C842 121 aa3.99□□□□□ -1.77
TCF4-249ENST00000625716 TLX1NBP0CAT3 122 aa3.99□□□□□ -1.77
TCF4-249ENST00000625716 NDUFA6P56556 154 aa3.99□□□□□ -1.77
TCF4-249ENST00000625716 RAB5BP61020 215 aa3.99□□□□□ -1.77
TCF4-249ENST00000625716 PRR3P79522 188 aaKnown RBP3.99□□□□□ -1.77
TCF4-249ENST00000625716 KIAA0087Q14695 138 aa3.99□□□□□ -1.77
TCF4-249ENST00000625716 C10orf25Q5T742 122 aa3.99□□□□□ -1.77
TCF4-249ENST00000625716 C2orf82Q6UX34 121 aa3.99□□□□□ -1.77
TCF4-249ENST00000625716 Q8IZM0 81 aa3.99□□□□□ -1.77
TCF4-249ENST00000625716 LINC00469Q8N7U9 141 aa3.99□□□□□ -1.77
TCF4-249ENST00000625716 C6orf48Q9UBA6 75 aa3.99□□□□□ -1.77
TCF4-249ENST00000625716 CDKN2A-AS1Q9UH64 79 aa3.99□□□□□ -1.77
TCF4-249ENST00000625716 FAT1Q14517 4588 aa3.99□□□□□ -1.77
TCF4-249ENST00000625716 TINCRA0A1B0GVN0 87 aa3.98□□□□□ -1.77
TCF4-249ENST00000625716 LINC01546A6NGU7 62 aa3.98□□□□□ -1.77
TCF4-249ENST00000625716 NDUFC2-KCTD14E9PQ53 114 aa3.98□□□□□ -1.77
TCF4-249ENST00000625716 H3BRM9 83 aa3.98□□□□□ -1.77
TCF4-249ENST00000625716 PMVKQ15126 192 aa3.98□□□□□ -1.77
TCF4-249ENST00000625716 SERTAD4-AS1Q5TG53 156 aa3.98□□□□□ -1.77
TCF4-249ENST00000625716 REG3GQ6UW15 175 aa3.98□□□□□ -1.77
TCF4-249ENST00000625716 SPINK6Q6UWN8 80 aa3.98□□□□□ -1.77
TCF4-249ENST00000625716 FAM19A5Q7Z5A7 132 aaPredicted RBP3.98□□□□□ -1.77
TCF4-249ENST00000625716 YPEL4Q96NS1 127 aa3.98□□□□□ -1.77
TCF4-249ENST00000625716 CST9LQ9H4G1 147 aa3.98□□□□□ -1.77
TCF4-249ENST00000625716 FLG2Q5D862 2391 aaPredicted RBP3.98□□□□□ -1.77
TCF4-249ENST00000625716 F8VRH5 84 aa3.97□□□□□ -1.77
TCF4-249ENST00000625716 TRIAP1O43715 76 aa3.97□□□□□ -1.77
TCF4-249ENST00000625716 CXCL5P42830 114 aa3.97□□□□□ -1.77
TCF4-249ENST00000625716 UBE2BP63146 152 aa3.97□□□□□ -1.77
TCF4-249ENST00000625716 PDZD11Q5EBL8 140 aa3.97□□□□□ -1.77
TCF4-249ENST00000625716 PHF5AQ7RTV0 110 aaKnown RBP3.97□□□□□ -1.77
TCF4-249ENST00000625716 C18orf32Q8TCD1 76 aa3.97□□□□□ -1.77
TCF4-249ENST00000625716 DMBT1Q9UGM3 2413 aaPredicted RBP3.96□□□□□ -1.77
TCF4-249ENST00000625716 FAM168BA1KXE4 195 aa3.96□□□□□ -1.78
TCF4-249ENST00000625716 ATP5LO75964 103 aa3.96□□□□□ -1.78
TCF4-249ENST00000625716 HBDP02042 147 aa3.96□□□□□ -1.78
TCF4-249ENST00000625716 IGKV2-30P06310 120 aa3.96□□□□□ -1.78
TCF4-249ENST00000625716 ODF1Q14990 250 aa3.96□□□□□ -1.78
TCF4-249ENST00000625716 C1orf137Q5JT78 98 aa3.96□□□□□ -1.78
TCF4-249ENST00000625716 CBLN2Q8IUK8 224 aa3.96□□□□□ -1.78
TCF4-249ENST00000625716 COX7B2Q8TF08 81 aa3.96□□□□□ -1.78
TCF4-249ENST00000625716 IGLV5-45A0A087WSX0 123 aa3.95□□□□□ -1.78
TCF4-249ENST00000625716 SMIM1B2RUZ4 78 aa3.95□□□□□ -1.78
TCF4-249ENST00000625716 M0QXV9 152 aa3.95□□□□□ -1.78
TCF4-249ENST00000625716 ATP6V1G1O75348 118 aa3.95□□□□□ -1.78
TCF4-249ENST00000625716 SPINK8P0C7L1 97 aa3.95□□□□□ -1.78
TCF4-249ENST00000625716 PMCHL1Q16048 86 aa3.95□□□□□ -1.78
TCF4-249ENST00000625716 KRTAP2-2Q9BYT5 123 aa3.95□□□□□ -1.78
TCF4-249ENST00000625716 PSORS1C2Q9UIG4 136 aa3.95□□□□□ -1.78
TCF4-249ENST00000625716 TMA7Q9Y2S6 64 aaKnown RBP3.95□□□□□ -1.78
TCF4-249ENST00000625716 COLCA2A8K830 154 aa3.94□□□□□ -1.78
TCF4-249ENST00000625716 IGLC3P0DOY3 106 aa3.94□□□□□ -1.78
TCF4-249ENST00000625716 SRSF9Q13242 221 aaKnown RBP eCLIP3.94□□□□□ -1.78
TCF4-249ENST00000625716 LBHQ53QV2 105 aaPredicted RBP3.94□□□□□ -1.78
TCF4-249ENST00000625716 C9orf129Q5T035 196 aaKnown RBP3.94□□□□□ -1.78
TCF4-249ENST00000625716 BAGE3Q86Y29 109 aa3.94□□□□□ -1.78
TCF4-249ENST00000625716 CHCHD1Q96BP2 118 aaKnown RBP3.94□□□□□ -1.78
TCF4-249ENST00000625716 LINC01600Q96MT4 127 aa3.94□□□□□ -1.78
TCF4-249ENST00000625716 XAGE1AQ9HD64 81 aa3.94□□□□□ -1.78
TCF4-249ENST00000625716 IGLV7-43P04211 117 aa3.93□□□□□ -1.78
TCF4-249ENST00000625716 TMEM170BQ5T4T1 132 aa3.93□□□□□ -1.78
TCF4-249ENST00000625716 DIRC1Q969H9 104 aa3.93□□□□□ -1.78
TCF4-249ENST00000625716 URB1-AS1Q96HZ7 61 aa3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms