RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 ZNF22P17026 224 aaPredicted RBP12.27□□□□□ -0.45
SHKBP1-221ENST00000599833 FLG2Q5D862 2391 aaPredicted RBP12.27□□□□□ -0.45
SHKBP1-221ENST00000599833 HSBP1O75506 76 aa12.26□□□□□ -0.45
SHKBP1-221ENST00000599833 Q6ZRP5 223 aa12.26□□□□□ -0.45
SHKBP1-221ENST00000599833 IGLV5-39A0A0G2JS06 123 aa12.25□□□□□ -0.45
SHKBP1-221ENST00000599833 C11orf86A6NJI1 115 aa12.25□□□□□ -0.45
SHKBP1-221ENST00000599833 HIST1H2BKO60814 126 aa12.25□□□□□ -0.45
SHKBP1-221ENST00000599833 HIST1H2BJP06899 126 aa12.25□□□□□ -0.45
SHKBP1-221ENST00000599833 SPINK8P0C7L1 97 aa12.25□□□□□ -0.45
SHKBP1-221ENST00000599833 HIST1H2BOP23527 126 aa12.25□□□□□ -0.45
SHKBP1-221ENST00000599833 HIST1H2BBP33778 126 aa12.25□□□□□ -0.45
SHKBP1-221ENST00000599833 HIST1H2BDP58876 126 aa12.25□□□□□ -0.45
SHKBP1-221ENST00000599833 HIST1H2BCP62807 126 aa12.25□□□□□ -0.45
SHKBP1-221ENST00000599833 HIST2H2BEQ16778 126 aa12.25□□□□□ -0.45
SHKBP1-221ENST00000599833 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.25□□□□□ -0.45
SHKBP1-221ENST00000599833 STPG4Q8N801 248 aa12.25□□□□□ -0.45
SHKBP1-221ENST00000599833 HIST1H2BHQ93079 126 aa12.25□□□□□ -0.45
SHKBP1-221ENST00000599833 IFI27L1Q96BM0 104 aa12.25□□□□□ -0.45
SHKBP1-221ENST00000599833 HIST1H2BNQ99877 126 aa12.25□□□□□ -0.45
SHKBP1-221ENST00000599833 HIST1H2BMQ99879 126 aa12.25□□□□□ -0.45
SHKBP1-221ENST00000599833 PKIGQ9Y2B9 76 aa12.25□□□□□ -0.45
SHKBP1-221ENST00000599833 HERC1Q15751 4861 aa12.25□□□□□ -0.45
SHKBP1-221ENST00000599833 TRAV12-1A0A0B4J245 112 aa12.24□□□□□ -0.45
SHKBP1-221ENST00000599833 TRBV30A0A0K0K1B3 111 aa12.24□□□□□ -0.45
SHKBP1-221ENST00000599833 NDUFA6P56556 154 aa12.24□□□□□ -0.45
SHKBP1-221ENST00000599833 C9orf116Q5BN46 136 aaPredicted RBP12.24□□□□□ -0.45
SHKBP1-221ENST00000599833 TOMM7Q9P0U1 55 aa12.24□□□□□ -0.45
SHKBP1-221ENST00000599833 LINC00474Q9P2X8 69 aa12.24□□□□□ -0.45
SHKBP1-221ENST00000599833 A0A1W2PNN7 141 aa12.23□□□□□ -0.45
SHKBP1-221ENST00000599833 GAGE2BQ13066 116 aa12.23□□□□□ -0.45
SHKBP1-221ENST00000599833 PACRGQ96M98 296 aaPredicted RBP12.23□□□□□ -0.45
SHKBP1-221ENST00000599833 ATP6V1G1O75348 118 aa12.21□□□□□ -0.45
SHKBP1-221ENST00000599833 PLA2G1BP04054 148 aaKnown RBP12.21□□□□□ -0.45
SHKBP1-221ENST00000599833 RPL18AQ02543 176 aaKnown RBP12.21□□□□□ -0.45
SHKBP1-221ENST00000599833 C6orf226Q5I0X4 101 aa12.21□□□□□ -0.45
SHKBP1-221ENST00000599833 KRTAP7-1Q8IUC3 87 aa12.21□□□□□ -0.45
SHKBP1-221ENST00000599833 INAFM2P0DMQ5 153 aa12.2□□□□□ -0.46
SHKBP1-221ENST00000599833 COX7B2Q8TF08 81 aa12.2□□□□□ -0.46
SHKBP1-221ENST00000599833 CHTOPQ9Y3Y2 248 aaKnown RBP12.2□□□□□ -0.46
SHKBP1-221ENST00000599833 F8VRH5 84 aa12.19□□□□□ -0.46
SHKBP1-221ENST00000599833 PRSS2P07478 247 aa12.19□□□□□ -0.46
SHKBP1-221ENST00000599833 HNRNPA3P51991 378 aaKnown RBP12.19□□□□□ -0.46
SHKBP1-221ENST00000599833 DPH3Q96FX2 82 aa12.19□□□□□ -0.46
SHKBP1-221ENST00000599833 NDUFC2-KCTD14E9PQ53 114 aa12.18□□□□□ -0.46
SHKBP1-221ENST00000599833 RPL37AP61513 92 aaKnown RBP12.18□□□□□ -0.46
SHKBP1-221ENST00000599833 ODF1Q14990 250 aa12.18□□□□□ -0.46
SHKBP1-221ENST00000599833 TNXBP22105 4242 aa12.17□□□□□ -0.46
SHKBP1-221ENST00000599833 FAM168BA1KXE4 195 aa12.17□□□□□ -0.46
SHKBP1-221ENST00000599833 H3BRM9 83 aa12.17□□□□□ -0.46
SHKBP1-221ENST00000599833 LEPROTL1O95214 131 aa12.17□□□□□ -0.46
SHKBP1-221ENST00000599833 CXCL5P42830 114 aa12.17□□□□□ -0.46
SHKBP1-221ENST00000599833 CKS1BP61024 79 aa12.17□□□□□ -0.46
SHKBP1-221ENST00000599833 C9orf129Q5T035 196 aaKnown RBP12.17□□□□□ -0.46
SHKBP1-221ENST00000599833 S100A1P23297 94 aa12.16□□□□□ -0.46
SHKBP1-221ENST00000599833 TMEM223A0PJW6 202 aa12.15□□□□□ -0.46
SHKBP1-221ENST00000599833 COA6Q5JTJ3 125 aaKnown RBP12.15□□□□□ -0.46
SHKBP1-221ENST00000599833 FABP4P15090 132 aa12.13□□□□□ -0.47
SHKBP1-221ENST00000599833 GAGE2EQ4V326 116 aa12.13□□□□□ -0.47
SHKBP1-221ENST00000599833 TMEM170BQ5T4T1 132 aa12.13□□□□□ -0.47
SHKBP1-221ENST00000599833 GAGE2DQ9UEU5 116 aa12.13□□□□□ -0.47
SHKBP1-221ENST00000599833 KRTAP11-1Q8IUC1 163 aa12.11□□□□□ -0.47
SHKBP1-221ENST00000599833 ZNF625Q96I27 306 aaPredicted RBP12.11□□□□□ -0.47
SHKBP1-221ENST00000599833 HSPB8Q9UJY1 196 aa12.11□□□□□ -0.47
SHKBP1-221ENST00000599833 PRR3P79522 188 aaKnown RBP12.1□□□□□ -0.47
SHKBP1-221ENST00000599833 PHF5AQ7RTV0 110 aaKnown RBP12.1□□□□□ -0.47
SHKBP1-221ENST00000599833 H0Y8G0 127 aa12.09□□□□□ -0.47
SHKBP1-221ENST00000599833 SERTAD4-AS1Q5TG53 156 aa12.08□□□□□ -0.48
SHKBP1-221ENST00000599833 C7orf33Q8WU49 177 aa12.08□□□□□ -0.48
SHKBP1-221ENST00000599833 PMCHL2Q9BQD1 86 aa12.07□□□□□ -0.48
SHKBP1-221ENST00000599833 XAGE1AQ9HD64 81 aa12.07□□□□□ -0.48
SHKBP1-221ENST00000599833 FAM19A5Q7Z5A7 132 aaPredicted RBP12.06□□□□□ -0.48
SHKBP1-221ENST00000599833 DMBT1Q9UGM3 2413 aaPredicted RBP12.05□□□□□ -0.48
SHKBP1-221ENST00000599833 TSPEAR-AS2P59090 65 aa12.04□□□□□ -0.48
SHKBP1-221ENST00000599833 PLNP26678 52 aa12.03□□□□□ -0.48
SHKBP1-221ENST00000599833 PSORS1C2Q9UIG4 136 aa12.03□□□□□ -0.48
SHKBP1-221ENST00000599833 SYS1-DBNDD2H3BUS1 97 aa12.02□□□□□ -0.49
SHKBP1-221ENST00000599833 MAP1LC3CQ9BXW4 147 aa12.02□□□□□ -0.49
SHKBP1-221ENST00000599833 ERG28Q9UKR5 140 aa12.02□□□□□ -0.49
SHKBP1-221ENST00000599833 M0QXV9 152 aa12.01□□□□□ -0.49
SHKBP1-221ENST00000599833 DPM2O94777 84 aa12.01□□□□□ -0.49
SHKBP1-221ENST00000599833 IGKCP01834 107 aa12□□□□□ -0.49
SHKBP1-221ENST00000599833 SRSF9Q13242 221 aaKnown RBP eCLIP12□□□□□ -0.49
SHKBP1-221ENST00000599833 PLA2G2DQ9UNK4 145 aa12□□□□□ -0.49
SHKBP1-221ENST00000599833 KRTAP29-1A8MX34 341 aaPredicted RBP11.99□□□□□ -0.49
SHKBP1-221ENST00000599833 PFN2P35080 140 aa11.99□□□□□ -0.49
SHKBP1-221ENST00000599833 LINC01545Q5VT33 79 aa11.99□□□□□ -0.49
SHKBP1-221ENST00000599833 SFTA2Q6UW10 78 aa11.99□□□□□ -0.49
SHKBP1-221ENST00000599833 C22orf24Q9Y442 160 aa11.99□□□□□ -0.49
SHKBP1-221ENST00000599833 C3orf79P0CE67 100 aa11.98□□□□□ -0.49
SHKBP1-221ENST00000599833 COX17Q14061 63 aa11.98□□□□□ -0.49
SHKBP1-221ENST00000599833 Q8NDZ9 215 aa11.98□□□□□ -0.49
SHKBP1-221ENST00000599833 IGLV5-37A0A075B6J1 123 aa11.97□□□□□ -0.49
SHKBP1-221ENST00000599833 LEPROTO15243 131 aa11.97□□□□□ -0.49
SHKBP1-221ENST00000599833 SND1-IT1Q9HBX3 110 aa11.96□□□□□ -0.49
SHKBP1-221ENST00000599833 TP73-AS1Q9UF72 201 aa11.96□□□□□ -0.49
SHKBP1-221ENST00000599833 PET117Q6UWS5 81 aa11.95□□□□□ -0.5
SHKBP1-221ENST00000599833 NDUFA12Q9UI09 145 aa11.94□□□□□ -0.5
SHKBP1-221ENST00000599833 J3QQQ9 107 aa11.92□□□□□ -0.5
SHKBP1-221ENST00000599833 SMIM13P0DJ93 91 aa11.92□□□□□ -0.5
SHKBP1-221ENST00000599833 VPREB1P12018 145 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 90.6 ms