RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 LYRM7Q5U5X0 104 aa9.86□□□□□ -0.83
VRK3-217ENST00000599538 TRBV20-1A0A075B6N2 111 aa9.86□□□□□ -0.83
VRK3-217ENST00000599538 TRBV30A0A0K0K1B3 111 aa9.86□□□□□ -0.83
VRK3-217ENST00000599538 KPRPQ5T749 579 aaPredicted RBP9.86□□□□□ -0.83
VRK3-217ENST00000599538 PFN2P35080 140 aa9.85□□□□□ -0.83
VRK3-217ENST00000599538 NANOS2P60321 138 aaKnown RBP9.85□□□□□ -0.83
VRK3-217ENST00000599538 C6orf226Q5I0X4 101 aa9.85□□□□□ -0.83
VRK3-217ENST00000599538 CD164L2Q6UWJ8 174 aa9.85□□□□□ -0.83
VRK3-217ENST00000599538 LINC00158P58513 81 aa9.85□□□□□ -0.83
VRK3-217ENST00000599538 KLK12Q9UKR0 248 aa9.85□□□□□ -0.83
VRK3-217ENST00000599538 MGAM2Q2M2H8 2515 aa9.84□□□□□ -0.83
VRK3-217ENST00000599538 FOXI1Q12951 378 aa9.83□□□□□ -0.84
VRK3-217ENST00000599538 KIAA0087Q14695 138 aa9.83□□□□□ -0.84
VRK3-217ENST00000599538 COX7A2LO14548 114 aa9.82□□□□□ -0.84
VRK3-217ENST00000599538 ENHOQ6UWT2 76 aa9.82□□□□□ -0.84
VRK3-217ENST00000599538 WFDC10BQ8IUB3 73 aa9.82□□□□□ -0.84
VRK3-217ENST00000599538 Q8IZM0 81 aa9.82□□□□□ -0.84
VRK3-217ENST00000599538 CLEC2BQ92478 149 aa9.82□□□□□ -0.84
VRK3-217ENST00000599538 IBA57-AS1B1ANH7 110 aa9.82□□□□□ -0.84
VRK3-217ENST00000599538 PCP4P48539 62 aa9.82□□□□□ -0.84
VRK3-217ENST00000599538 C9JAW5 83 aa9.81□□□□□ -0.84
VRK3-217ENST00000599538 CCL18P55774 89 aa9.81□□□□□ -0.84
VRK3-217ENST00000599538 VPS25Q9BRG1 176 aa9.81□□□□□ -0.84
VRK3-217ENST00000599538 PRR34Q9NV39 138 aa9.81□□□□□ -0.84
VRK3-217ENST00000599538 IGKV2-28A0A075B6P5 120 aa9.8□□□□□ -0.84
VRK3-217ENST00000599538 IGKV2D-28P01615 120 aa9.8□□□□□ -0.84
VRK3-217ENST00000599538 GAGE12HA6NDE8 117 aa9.8□□□□□ -0.84
VRK3-217ENST00000599538 LINC01561Q8N1V8 128 aa9.8□□□□□ -0.84
VRK3-217ENST00000599538 C11orf45Q8TAV5 145 aa9.8□□□□□ -0.84
VRK3-217ENST00000599538 MRAPQ8TCY5 172 aa9.8□□□□□ -0.84
VRK3-217ENST00000599538 SND1-IT1Q9HBX3 110 aa9.8□□□□□ -0.84
VRK3-217ENST00000599538 H3BNG1 76 aa9.79□□□□□ -0.84
VRK3-217ENST00000599538 K7EIL1 84 aa9.79□□□□□ -0.84
VRK3-217ENST00000599538 MALP21145 153 aa9.79□□□□□ -0.84
VRK3-217ENST00000599538 LINC00337Q8N6G1 96 aa9.79□□□□□ -0.84
VRK3-217ENST00000599538 COPS9Q8WXC6 57 aa9.79□□□□□ -0.84
VRK3-217ENST00000599538 LINC00526Q96FQ7 95 aa9.79□□□□□ -0.84
VRK3-217ENST00000599538 DEFB131BA0A096LNP1 70 aa9.79□□□□□ -0.84
VRK3-217ENST00000599538 ESRGQ1W209 222 aa9.79□□□□□ -0.84
VRK3-217ENST00000599538 LINC01620Q4KN68 170 aa9.79□□□□□ -0.84
VRK3-217ENST00000599538 SLC25A20O43772 301 aa9.78□□□□□ -0.84
VRK3-217ENST00000599538 ATXN8Q156A1 80 aa9.78□□□□□ -0.84
VRK3-217ENST00000599538 C9orf116Q5BN46 136 aaPredicted RBP9.78□□□□□ -0.84
VRK3-217ENST00000599538 CKS1BP61024 79 aa9.77□□□□□ -0.84
VRK3-217ENST00000599538 C6orf223Q8N319 242 aa9.77□□□□□ -0.84
VRK3-217ENST00000599538 UBE2WQ96B02 151 aa9.77□□□□□ -0.84
VRK3-217ENST00000599538 PPDPFQ9H3Y8 114 aa9.77□□□□□ -0.84
VRK3-217ENST00000599538 C21orf62-AS1Q17RA5 79 aa9.77□□□□□ -0.85
VRK3-217ENST00000599538 CARD19Q96LW7 228 aa9.77□□□□□ -0.85
VRK3-217ENST00000599538 COX6CP09669 75 aa9.76□□□□□ -0.85
VRK3-217ENST00000599538 DEFB121Q5J5C9 76 aa9.76□□□□□ -0.85
VRK3-217ENST00000599538 C10orf25Q5T742 122 aa9.76□□□□□ -0.85
VRK3-217ENST00000599538 ANKRD29Q8N6D5 301 aa9.76□□□□□ -0.85
VRK3-217ENST00000599538 HUWE1Q7Z6Z7 4374 aaKnown RBP9.75□□□□□ -0.85
VRK3-217ENST00000599538 CFAP161Q6P656 301 aa9.75□□□□□ -0.85
VRK3-217ENST00000599538 LST1O00453 97 aa9.74□□□□□ -0.85
VRK3-217ENST00000599538 TEN1Q86WV5 123 aa9.74□□□□□ -0.85
VRK3-217ENST00000599538 UNQ6190/PRO20217Q6UXQ8 127 aa9.74□□□□□ -0.85
VRK3-217ENST00000599538 MDFIQ99750 246 aa9.74□□□□□ -0.85
VRK3-217ENST00000599538 TM2D3Q9BRN9 247 aa9.74□□□□□ -0.85
VRK3-217ENST00000599538 CRPP02741 224 aa9.73□□□□□ -0.85
VRK3-217ENST00000599538 SPAG11BQ08648 103 aa9.73□□□□□ -0.85
VRK3-217ENST00000599538 KLK5Q9Y337 293 aaPredicted RBP9.73□□□□□ -0.85
VRK3-217ENST00000599538 TRAV13-2A0A0B4J235 113 aa9.72□□□□□ -0.85
VRK3-217ENST00000599538 PRR3P79522 188 aaKnown RBP9.72□□□□□ -0.85
VRK3-217ENST00000599538 SPATA25Q9BR10 227 aa9.72□□□□□ -0.85
VRK3-217ENST00000599538 TRBV10-2A0A0K0K1G8 114 aa9.71□□□□□ -0.85
VRK3-217ENST00000599538 KRTAP26-1Q6PEX3 210 aa9.71□□□□□ -0.85
VRK3-217ENST00000599538 FAM218AQ96MZ4 157 aa9.71□□□□□ -0.85
VRK3-217ENST00000599538 CXCL5P42830 114 aa9.71□□□□□ -0.86
VRK3-217ENST00000599538 COL7A1Q02388 2944 aa9.7□□□□□ -0.86
VRK3-217ENST00000599538 Q8NDZ9 215 aa9.7□□□□□ -0.86
VRK3-217ENST00000599538 SMIM11BQ8TCY0 68 aa9.7□□□□□ -0.86
VRK3-217ENST00000599538 NTN5Q8WTR8 489 aaPredicted RBP9.7□□□□□ -0.86
VRK3-217ENST00000599538 RPL28P46779 137 aaKnown RBP9.69□□□□□ -0.86
VRK3-217ENST00000599538 PPDPFLQ8WWR9 84 aa9.69□□□□□ -0.86
VRK3-217ENST00000599538 TRAV8-4A0A0B4J246 113 aa9.68□□□□□ -0.86
VRK3-217ENST00000599538 J3QR89 54 aa9.68□□□□□ -0.86
VRK3-217ENST00000599538 M0QXV9 152 aa9.68□□□□□ -0.86
VRK3-217ENST00000599538 COX17Q14061 63 aa9.67□□□□□ -0.86
VRK3-217ENST00000599538 HIGD2BQ4VC39 106 aa9.67□□□□□ -0.86
VRK3-217ENST00000599538 OR13C6PQ8NH95 151 aa9.67□□□□□ -0.86
VRK3-217ENST00000599538 TEX49A0A1B0GTD5 131 aa9.67□□□□□ -0.86
VRK3-217ENST00000599538 LINC01600Q96MT4 127 aa9.67□□□□□ -0.86
VRK3-217ENST00000599538 STAB2Q8WWQ8 2551 aa9.66□□□□□ -0.86
VRK3-217ENST00000599538 TRAV10A0A0B4J240 114 aa9.66□□□□□ -0.86
VRK3-217ENST00000599538 LINC01556Q5JQF7 62 aa9.66□□□□□ -0.86
VRK3-217ENST00000599538 C6orf48Q9UBA6 75 aa9.65□□□□□ -0.86
VRK3-217ENST00000599538 LINC00588Q9Y4M8 146 aa9.64□□□□□ -0.87
VRK3-217ENST00000599538 H3BT86 120 aa9.64□□□□□ -0.87
VRK3-217ENST00000599538 C15orf56Q8N910 161 aa9.64□□□□□ -0.87
VRK3-217ENST00000599538 A0A087WYN8 130 aa9.63□□□□□ -0.87
VRK3-217ENST00000599538 Q9HAA7 133 aa9.63□□□□□ -0.87
VRK3-217ENST00000599538 IGKV2D-24A0A075B6R9 120 aa9.62□□□□□ -0.87
VRK3-217ENST00000599538 NCR3O14931 201 aa9.62□□□□□ -0.87
VRK3-217ENST00000599538 CDIP1Q9H305 208 aa9.62□□□□□ -0.87
VRK3-217ENST00000599538 NDUFC2O95298 119 aa9.61□□□□□ -0.87
VRK3-217ENST00000599538 DNAH10OSP0CZ25 163 aa9.61□□□□□ -0.87
VRK3-217ENST00000599538 TRACP01848 142 aa9.61□□□□□ -0.87
VRK3-217ENST00000599538 C1orf43Q9BWL3 253 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 105.3 ms