RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 LINC00643Q86TS7 51 aa2.99□□□□□ -1.93
LIG3-211ENST00000588713 TMEM61Q8N0U2 210 aa2.99□□□□□ -1.93
LIG3-211ENST00000588713 C3orf22Q8N5N4 141 aa2.99□□□□□ -1.93
LIG3-211ENST00000588713 DAND5Q8N907 189 aa2.99□□□□□ -1.93
LIG3-211ENST00000588713 C20orf203Q8NBC4 194 aa2.99□□□□□ -1.93
LIG3-211ENST00000588713 C9orf85Q96MD7 179 aa2.99□□□□□ -1.93
LIG3-211ENST00000588713 PYGO1Q9Y3Y4 419 aa2.99□□□□□ -1.93
LIG3-211ENST00000588713 IGHV1-58A0A0C4DH39 117 aa2.98□□□□□ -1.93
LIG3-211ENST00000588713 A0A0J9YWU9 116 aa2.98□□□□□ -1.93
LIG3-211ENST00000588713 H7C2G1 150 aa2.98□□□□□ -1.93
LIG3-211ENST00000588713 ATOX1O00244 68 aa2.98□□□□□ -1.93
LIG3-211ENST00000588713 NDUFA4O00483 81 aa2.98□□□□□ -1.93
LIG3-211ENST00000588713 COX7A2LO14548 114 aa2.98□□□□□ -1.93
LIG3-211ENST00000588713 TRACP01848 142 aa2.98□□□□□ -1.93
LIG3-211ENST00000588713 PLA2G1BP04054 148 aaKnown RBP2.98□□□□□ -1.93
LIG3-211ENST00000588713 CRYGAP11844 174 aa2.98□□□□□ -1.93
LIG3-211ENST00000588713 HIST1H4AP62805 103 aaKnown RBP2.98□□□□□ -1.93
LIG3-211ENST00000588713 RPL39P62891 51 aaKnown RBP2.98□□□□□ -1.93
LIG3-211ENST00000588713 CLEC19AQ6UXS0 136 aa2.98□□□□□ -1.93
LIG3-211ENST00000588713 LINC00526Q96FQ7 95 aa2.98□□□□□ -1.93
LIG3-211ENST00000588713 OVOL2Q9BRP0 275 aa2.98□□□□□ -1.93
LIG3-211ENST00000588713 PEMTQ9UBM1 199 aa2.98□□□□□ -1.93
LIG3-211ENST00000588713 CSDC2Q9Y534 153 aaKnown RBP2.98□□□□□ -1.93
LIG3-211ENST00000588713 LRP2P98164 4655 aa2.98□□□□□ -1.93
LIG3-211ENST00000588713 IGHV3OR16-8A0A075B7F1 116 aa2.97□□□□□ -1.93
LIG3-211ENST00000588713 IGHV3-66A0A0C4DH42 116 aa2.97□□□□□ -1.93
LIG3-211ENST00000588713 TINCRA0A1B0GVN0 87 aa2.97□□□□□ -1.93
LIG3-211ENST00000588713 I3L3M4 83 aa2.97□□□□□ -1.93
LIG3-211ENST00000588713 M0QY20 66 aa2.97□□□□□ -1.93
LIG3-211ENST00000588713 NDUFA1O15239 70 aa2.97□□□□□ -1.93
LIG3-211ENST00000588713 IGHV3-30-3P0DP02 117 aa2.97□□□□□ -1.93
LIG3-211ENST00000588713 COX7CP15954 63 aa2.97□□□□□ -1.93
LIG3-211ENST00000588713 TMEM258P61165 79 aa2.97□□□□□ -1.93
LIG3-211ENST00000588713 RPS28P62857 69 aaKnown RBP2.97□□□□□ -1.93
LIG3-211ENST00000588713 ZNF415Q09FC8 603 aa2.97□□□□□ -1.93
LIG3-211ENST00000588713 C5orf56Q8N8D9 126 aa2.97□□□□□ -1.93
LIG3-211ENST00000588713 OR13C6PQ8NH95 151 aa2.97□□□□□ -1.93
LIG3-211ENST00000588713 VSIG2Q96IQ7 327 aa2.97□□□□□ -1.93
LIG3-211ENST00000588713 SPXQ9BT56 116 aa2.97□□□□□ -1.93
LIG3-211ENST00000588713 CRCT1Q9UGL9 99 aa2.97□□□□□ -1.93
LIG3-211ENST00000588713 NDUFA12Q9UI09 145 aa2.97□□□□□ -1.93
LIG3-211ENST00000588713 MOB4Q9Y3A3 225 aa2.97□□□□□ -1.93
LIG3-211ENST00000588713 IGLV5-45A0A087WSX0 123 aa2.96□□□□□ -1.94
LIG3-211ENST00000588713 TRAV41A0A0B4J266 112 aa2.96□□□□□ -1.94
LIG3-211ENST00000588713 IGHV3-16A0A0C4DH30 117 aa2.96□□□□□ -1.94
LIG3-211ENST00000588713 IGHV3-35A0A0C4DH35 117 aa2.96□□□□□ -1.94
LIG3-211ENST00000588713 A0A0J9YXV3 536 aa2.96□□□□□ -1.94
LIG3-211ENST00000588713 SMIM9A6NGZ8 99 aa2.96□□□□□ -1.94
LIG3-211ENST00000588713 ID1P41134 155 aa2.96□□□□□ -1.94
LIG3-211ENST00000588713 HERVK_113P63121 156 aa2.96□□□□□ -1.94
LIG3-211ENST00000588713 PIK3CD-AS1Q5SR53 167 aa2.96□□□□□ -1.94
LIG3-211ENST00000588713 C5orf38Q86SI9 138 aa2.96□□□□□ -1.94
LIG3-211ENST00000588713 RNF152Q8N8N0 203 aa2.96□□□□□ -1.94
LIG3-211ENST00000588713 DCANP1Q8TF63 244 aa2.96□□□□□ -1.94
LIG3-211ENST00000588713 CLEC2BQ92478 149 aa2.96□□□□□ -1.94
LIG3-211ENST00000588713 USMG5Q96IX5 58 aa2.96□□□□□ -1.94
LIG3-211ENST00000588713 CHCHD5Q9BSY4 110 aa2.96□□□□□ -1.94
LIG3-211ENST00000588713 LINC00527Q9UJ94 153 aa2.96□□□□□ -1.94
LIG3-211ENST00000588713 SORL1Q92673 2214 aa2.96□□□□□ -1.94
LIG3-211ENST00000588713 VPS13BQ7Z7G8 4022 aa2.96□□□□□ -1.94
LIG3-211ENST00000588713 IGHV3-64A0A075B6Q5 118 aa2.95□□□□□ -1.94
LIG3-211ENST00000588713 IGHV3OR16-13A0A075B7E8 117 aa2.95□□□□□ -1.94
LIG3-211ENST00000588713 A0A087WWL8 130 aa2.95□□□□□ -1.94
LIG3-211ENST00000588713 IGHV3-49A0A0A0MS15 119 aa2.95□□□□□ -1.94
LIG3-211ENST00000588713 IGHV3-74A0A0B4J1X5 117 aa2.95□□□□□ -1.94
LIG3-211ENST00000588713 KRTAP29-1A8MX34 341 aaPredicted RBP2.95□□□□□ -1.94
LIG3-211ENST00000588713 F5H697 171 aa2.95□□□□□ -1.94
LIG3-211ENST00000588713 J3KRW8 73 aa2.95□□□□□ -1.94
LIG3-211ENST00000588713 GNRH2O43555 120 aa2.95□□□□□ -1.94
LIG3-211ENST00000588713 CIRBPQ14011 172 aaKnown RBP2.95□□□□□ -1.94
LIG3-211ENST00000588713 Q6JHZ5 121 aa2.95□□□□□ -1.94
LIG3-211ENST00000588713 FAM19A3Q7Z5A8 133 aa2.95□□□□□ -1.94
LIG3-211ENST00000588713 SMCR5Q8TEV8 140 aa2.95□□□□□ -1.94
LIG3-211ENST00000588713 ZNF580Q9UK33 172 aa2.95□□□□□ -1.94
LIG3-211ENST00000588713 IGHV1OR15-1A0A075B7D0 117 aa2.94□□□□□ -1.94
LIG3-211ENST00000588713 TRAV8-3A0A0A6YYJ7 113 aa2.94□□□□□ -1.94
LIG3-211ENST00000588713 IGLV5-39A0A0G2JS06 123 aa2.94□□□□□ -1.94
LIG3-211ENST00000588713 NDUFC2-KCTD14E9PQ53 114 aa2.94□□□□□ -1.94
LIG3-211ENST00000588713 G3V318 75 aa2.94□□□□□ -1.94
LIG3-211ENST00000588713 ZNF561-AS1K7EIQ3 104 aa2.94□□□□□ -1.94
LIG3-211ENST00000588713 K7EMT4 169 aa2.94□□□□□ -1.94
LIG3-211ENST00000588713 SMR3BP02814 79 aaPredicted RBP2.94□□□□□ -1.94
LIG3-211ENST00000588713 LINC00694P0DN24 101 aa2.94□□□□□ -1.94
LIG3-211ENST00000588713 TIRAPP58753 221 aa2.94□□□□□ -1.94
LIG3-211ENST00000588713 RPL18AQ02543 176 aaKnown RBP2.94□□□□□ -1.94
LIG3-211ENST00000588713 ADAMTSL4-AS1Q5T5F5 129 aa2.94□□□□□ -1.94
LIG3-211ENST00000588713 FAM74A4Q5TZK3 123 aa2.94□□□□□ -1.94
LIG3-211ENST00000588713 ATP5EP2Q5VTU8 51 aa2.94□□□□□ -1.94
LIG3-211ENST00000588713 GAGE2AQ6NT46 116 aa2.94□□□□□ -1.94
LIG3-211ENST00000588713 UNQ9165/PRO28630Q6UXU0 137 aa2.94□□□□□ -1.94
LIG3-211ENST00000588713 Q6ZSN1 163 aa2.94□□□□□ -1.94
LIG3-211ENST00000588713 C2orf48Q96LS8 159 aa2.94□□□□□ -1.94
LIG3-211ENST00000588713 KRTAP9-8Q9BYQ0 159 aa2.94□□□□□ -1.94
LIG3-211ENST00000588713 DAZ1Q9NQZ3 744 aaKnown RBP2.94□□□□□ -1.94
LIG3-211ENST00000588713 UBE2D4Q9Y2X8 147 aa2.94□□□□□ -1.94
LIG3-211ENST00000588713 F6UB75 175 aa2.93□□□□□ -1.94
LIG3-211ENST00000588713 SPRY2O43597 315 aa2.93□□□□□ -1.94
LIG3-211ENST00000588713 DNAL4O96015 105 aa2.93□□□□□ -1.94
LIG3-211ENST00000588713 DAZ2Q13117 558 aaKnown RBP2.93□□□□□ -1.94
LIG3-211ENST00000588713 C1orf134Q5TEV5 83 aa2.93□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 101.2 ms