RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 LELP1Q5T871 98 aa6.98□□□□□ -1.29
SS18-221ENST00000582448 PCP2Q8IVA1 136 aa6.98□□□□□ -1.29
SS18-221ENST00000582448 HSPG2P98160 4391 aa6.97□□□□□ -1.29
SS18-221ENST00000582448 IGKV2D-26A0A0A0MRZ7 120 aa6.97□□□□□ -1.29
SS18-221ENST00000582448 TRAV13-1A0A0B4J241 112 aa6.97□□□□□ -1.29
SS18-221ENST00000582448 MYMXA0A1B0GTQ4 84 aa6.97□□□□□ -1.29
SS18-221ENST00000582448 A0A1B0GUV1 79 aa6.97□□□□□ -1.29
SS18-221ENST00000582448 TMEM223A0PJW6 202 aa6.97□□□□□ -1.29
SS18-221ENST00000582448 LEPROTO15243 131 aa6.97□□□□□ -1.29
SS18-221ENST00000582448 ZNF22P17026 224 aaPredicted RBP6.97□□□□□ -1.29
SS18-221ENST00000582448 BATFQ16520 125 aa6.97□□□□□ -1.29
SS18-221ENST00000582448 SCGB1D4Q6XE38 83 aa6.97□□□□□ -1.29
SS18-221ENST00000582448 ZNF815PA8K554 130 aa6.96□□□□□ -1.3
SS18-221ENST00000582448 J3QQQ9 107 aa6.96□□□□□ -1.3
SS18-221ENST00000582448 CCL25O15444 150 aa6.96□□□□□ -1.3
SS18-221ENST00000582448 CDK2AP2O75956 126 aa6.96□□□□□ -1.3
SS18-221ENST00000582448 SS18Q15532 418 aa6.96□□□□□ -1.3
SS18-221ENST00000582448 FAM19A3Q7Z5A8 133 aa6.96□□□□□ -1.3
SS18-221ENST00000582448 FAM104AQ969W3 186 aa6.96□□□□□ -1.3
SS18-221ENST00000582448 HIGD1BQ9P298 99 aa6.96□□□□□ -1.3
SS18-221ENST00000582448 RBX1P62877 108 aa6.95□□□□□ -1.3
SS18-221ENST00000582448 HSD52Q0P140 79 aa6.95□□□□□ -1.3
SS18-221ENST00000582448 C10orf25Q5T742 122 aa6.95□□□□□ -1.3
SS18-221ENST00000582448 IGHV1-58A0A0C4DH39 117 aa6.94□□□□□ -1.3
SS18-221ENST00000582448 IGKV3OR2-268A0A0C4DH90 116 aa6.94□□□□□ -1.3
SS18-221ENST00000582448 HINT1P49773 126 aaPredicted RBP6.94□□□□□ -1.3
SS18-221ENST00000582448 COL5A1-AS1Q5SY13 56 aa6.94□□□□□ -1.3
SS18-221ENST00000582448 LINC00242Q5T6M2 205 aa6.94□□□□□ -1.3
SS18-221ENST00000582448 C2orf91Q6ZV80 131 aa6.94□□□□□ -1.3
SS18-221ENST00000582448 C15orf53Q8NAA6 179 aa6.94□□□□□ -1.3
SS18-221ENST00000582448 IGLV4-60A0A075B6I1 120 aa6.93□□□□□ -1.3
SS18-221ENST00000582448 IGHV3-64A0A075B6Q5 118 aa6.93□□□□□ -1.3
SS18-221ENST00000582448 IGLV5-45A0A087WSX0 123 aa6.93□□□□□ -1.3
SS18-221ENST00000582448 KRTAP29-1A8MX34 341 aaPredicted RBP6.93□□□□□ -1.3
SS18-221ENST00000582448 ANGP03950 147 aaKnown RBP6.93□□□□□ -1.3
SS18-221ENST00000582448 SPINK8P0C7L1 97 aa6.93□□□□□ -1.3
SS18-221ENST00000582448 TAL2Q16559 108 aa6.93□□□□□ -1.3
SS18-221ENST00000582448 MPV17L2Q567V2 206 aa6.93□□□□□ -1.3
SS18-221ENST00000582448 LYPD5Q6UWN5 251 aa6.93□□□□□ -1.3
SS18-221ENST00000582448 C6orf223Q8N319 242 aa6.93□□□□□ -1.3
SS18-221ENST00000582448 SNHG12Q9BXW3 62 aa6.93□□□□□ -1.3
SS18-221ENST00000582448 CDKN2A-AS1Q9UH64 79 aa6.93□□□□□ -1.3
SS18-221ENST00000582448 A6NDN8 102 aa6.92□□□□□ -1.3
SS18-221ENST00000582448 IGHV3-30-3P0DP02 117 aa6.92□□□□□ -1.3
SS18-221ENST00000582448 HIST1H4GQ99525 98 aa6.92□□□□□ -1.3
SS18-221ENST00000582448 TTTY13Q9BZ97 58 aa6.92□□□□□ -1.3
SS18-221ENST00000582448 TP73-AS1Q9UF72 201 aa6.92□□□□□ -1.3
SS18-221ENST00000582448 NBDYA0A0U1RRE5 68 aa6.91□□□□□ -1.3
SS18-221ENST00000582448 LINC00959A0A1B0GUT2 108 aa6.91□□□□□ -1.3
SS18-221ENST00000582448 CRPP02741 224 aa6.91□□□□□ -1.3
SS18-221ENST00000582448 SRSF9Q13242 221 aaKnown RBP eCLIP6.91□□□□□ -1.3
SS18-221ENST00000582448 LRP1BQ9NZR2 4599 aa6.9□□□□□ -1.3
SS18-221ENST00000582448 TMEM238C9JI98 176 aa6.9□□□□□ -1.3
SS18-221ENST00000582448 COX6A2Q02221 97 aa6.9□□□□□ -1.3
SS18-221ENST00000582448 REG3AQ06141 175 aa6.9□□□□□ -1.3
SS18-221ENST00000582448 BVES-AS1Q5T3Y7 98 aa6.9□□□□□ -1.3
SS18-221ENST00000582448 LINC00269Q8N2A0 174 aa6.9□□□□□ -1.3
SS18-221ENST00000582448 ORAOV1Q8WV07 137 aa6.9□□□□□ -1.3
SS18-221ENST00000582448 NDUFA12Q9UI09 145 aa6.9□□□□□ -1.3
SS18-221ENST00000582448 TRAV8-3A0A0A6YYJ7 113 aa6.89□□□□□ -1.31
SS18-221ENST00000582448 CIRBPQ14011 172 aaKnown RBP6.89□□□□□ -1.31
SS18-221ENST00000582448 TM2D2Q9BX73 214 aa6.89□□□□□ -1.31
SS18-221ENST00000582448 IGLV5-39A0A0G2JS06 123 aa6.88□□□□□ -1.31
SS18-221ENST00000582448 SMIM1B2RUZ4 78 aa6.88□□□□□ -1.31
SS18-221ENST00000582448 XCL1P47992 114 aa6.88□□□□□ -1.31
SS18-221ENST00000582448 CCL18P55774 89 aa6.88□□□□□ -1.31
SS18-221ENST00000582448 TSPEAR-AS2P59090 65 aa6.88□□□□□ -1.31
SS18-221ENST00000582448 SFTA2Q6UW10 78 aa6.88□□□□□ -1.31
SS18-221ENST00000582448 CLPSL2Q6UWE3 100 aa6.88□□□□□ -1.31
SS18-221ENST00000582448 A0A087WZ39 114 aa6.87□□□□□ -1.31
SS18-221ENST00000582448 EPM2AB3EWF7 344 aa6.87□□□□□ -1.31
SS18-221ENST00000582448 PRSS2P07478 247 aa6.87□□□□□ -1.31
SS18-221ENST00000582448 HERV-K104P63124 156 aa6.87□□□□□ -1.31
SS18-221ENST00000582448 CD164L2Q6UWJ8 174 aa6.87□□□□□ -1.31
SS18-221ENST00000582448 CEND1Q8N111 149 aa6.87□□□□□ -1.31
SS18-221ENST00000582448 LINC01561Q8N1V8 128 aa6.87□□□□□ -1.31
SS18-221ENST00000582448 COX7B2Q8TF08 81 aa6.87□□□□□ -1.31
SS18-221ENST00000582448 COPS9Q8WXC6 57 aa6.87□□□□□ -1.31
SS18-221ENST00000582448 SPANXB1Q9NS25 103 aaPredicted RBP6.87□□□□□ -1.31
SS18-221ENST00000582448 KLK12Q9UKR0 248 aa6.87□□□□□ -1.31
SS18-221ENST00000582448 TRAV8-4A0A0B4J246 113 aa6.86□□□□□ -1.31
SS18-221ENST00000582448 IGHV3OR16-9A0A0B4J2B5 98 aa6.86□□□□□ -1.31
SS18-221ENST00000582448 COX7A2LO14548 114 aa6.86□□□□□ -1.31
SS18-221ENST00000582448 NDUFA1O15239 70 aa6.86□□□□□ -1.31
SS18-221ENST00000582448 APOMO95445 188 aa6.86□□□□□ -1.31
SS18-221ENST00000582448 IGHV3-30P01768 117 aa6.86□□□□□ -1.31
SS18-221ENST00000582448 IGHV3-33P01772 117 aa6.86□□□□□ -1.31
SS18-221ENST00000582448 INAFM2P0DMQ5 153 aa6.86□□□□□ -1.31
SS18-221ENST00000582448 IGHV3-30-5P0DP03 117 aa6.86□□□□□ -1.31
SS18-221ENST00000582448 ESRGQ1W209 222 aa6.86□□□□□ -1.31
SS18-221ENST00000582448 CHCHD10Q8WYQ3 142 aaPredicted RBP6.86□□□□□ -1.31
SS18-221ENST00000582448 TOMM7Q9P0U1 55 aa6.86□□□□□ -1.31
SS18-221ENST00000582448 LINC00588Q9Y4M8 146 aa6.86□□□□□ -1.31
SS18-221ENST00000582448 A0A0J9YXY3 114 aa6.85□□□□□ -1.31
SS18-221ENST00000582448 SMIM13P0DJ93 91 aa6.85□□□□□ -1.31
SS18-221ENST00000582448 MIAQ16674 131 aa6.85□□□□□ -1.31
SS18-221ENST00000582448 C6orf226Q5I0X4 101 aa6.85□□□□□ -1.31
SS18-221ENST00000582448 Q6ZVH6 145 aa6.85□□□□□ -1.31
SS18-221ENST00000582448 C5orf38Q86SI9 138 aa6.85□□□□□ -1.31
SS18-221ENST00000582448 WFDC10BQ8IUB3 73 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 221.3 ms