RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 LINC00269Q8N2A0 174 aa6.9□□□□□ -1.3
SS18-210ENST00000578700 ORAOV1Q8WV07 137 aa6.9□□□□□ -1.3
SS18-210ENST00000578700 NDUFA12Q9UI09 145 aa6.9□□□□□ -1.3
SS18-210ENST00000578700 TRAV8-3A0A0A6YYJ7 113 aa6.89□□□□□ -1.31
SS18-210ENST00000578700 TMEM238LA0A1B0GVL6 79 aa6.89□□□□□ -1.31
SS18-210ENST00000578700 A6NJY4 79 aa6.89□□□□□ -1.31
SS18-210ENST00000578700 CIRBPQ14011 172 aaKnown RBP6.89□□□□□ -1.31
SS18-210ENST00000578700 MYCBP2O75592 4640 aa6.89□□□□□ -1.31
SS18-210ENST00000578700 IGLV5-39A0A0G2JS06 123 aa6.88□□□□□ -1.31
SS18-210ENST00000578700 SMIM1B2RUZ4 78 aa6.88□□□□□ -1.31
SS18-210ENST00000578700 MALP21145 153 aa6.88□□□□□ -1.31
SS18-210ENST00000578700 XCL1P47992 114 aa6.88□□□□□ -1.31
SS18-210ENST00000578700 CCL18P55774 89 aa6.88□□□□□ -1.31
SS18-210ENST00000578700 TSPEAR-AS2P59090 65 aa6.88□□□□□ -1.31
SS18-210ENST00000578700 SFTA2Q6UW10 78 aa6.88□□□□□ -1.31
SS18-210ENST00000578700 CLPSL2Q6UWE3 100 aa6.88□□□□□ -1.31
SS18-210ENST00000578700 A0A087WZ39 114 aa6.87□□□□□ -1.31
SS18-210ENST00000578700 EPM2AB3EWF7 344 aa6.87□□□□□ -1.31
SS18-210ENST00000578700 PRSS2P07478 247 aa6.87□□□□□ -1.31
SS18-210ENST00000578700 HERV-K104P63124 156 aa6.87□□□□□ -1.31
SS18-210ENST00000578700 CD164L2Q6UWJ8 174 aa6.87□□□□□ -1.31
SS18-210ENST00000578700 CEND1Q8N111 149 aa6.87□□□□□ -1.31
SS18-210ENST00000578700 LINC01561Q8N1V8 128 aa6.87□□□□□ -1.31
SS18-210ENST00000578700 COX7B2Q8TF08 81 aa6.87□□□□□ -1.31
SS18-210ENST00000578700 COPS9Q8WXC6 57 aa6.87□□□□□ -1.31
SS18-210ENST00000578700 SPANXB1Q9NS25 103 aaPredicted RBP6.87□□□□□ -1.31
SS18-210ENST00000578700 KLK12Q9UKR0 248 aa6.87□□□□□ -1.31
SS18-210ENST00000578700 TRAV8-4A0A0B4J246 113 aa6.86□□□□□ -1.31
SS18-210ENST00000578700 IGHV3OR16-9A0A0B4J2B5 98 aa6.86□□□□□ -1.31
SS18-210ENST00000578700 COX7A2LO14548 114 aa6.86□□□□□ -1.31
SS18-210ENST00000578700 NDUFA1O15239 70 aa6.86□□□□□ -1.31
SS18-210ENST00000578700 APOMO95445 188 aa6.86□□□□□ -1.31
SS18-210ENST00000578700 IGHV3-30P01768 117 aa6.86□□□□□ -1.31
SS18-210ENST00000578700 IGHV3-33P01772 117 aa6.86□□□□□ -1.31
SS18-210ENST00000578700 INAFM2P0DMQ5 153 aa6.86□□□□□ -1.31
SS18-210ENST00000578700 IGHV3-30-5P0DP03 117 aa6.86□□□□□ -1.31
SS18-210ENST00000578700 KRTAP10-2P60368 255 aa6.86□□□□□ -1.31
SS18-210ENST00000578700 ESRGQ1W209 222 aa6.86□□□□□ -1.31
SS18-210ENST00000578700 CHCHD10Q8WYQ3 142 aaPredicted RBP6.86□□□□□ -1.31
SS18-210ENST00000578700 TM2D2Q9BX73 214 aa6.86□□□□□ -1.31
SS18-210ENST00000578700 TOMM7Q9P0U1 55 aa6.86□□□□□ -1.31
SS18-210ENST00000578700 LINC00588Q9Y4M8 146 aa6.86□□□□□ -1.31
SS18-210ENST00000578700 A0A0J9YXY3 114 aa6.85□□□□□ -1.31
SS18-210ENST00000578700 SMIM13P0DJ93 91 aa6.85□□□□□ -1.31
SS18-210ENST00000578700 MIAQ16674 131 aa6.85□□□□□ -1.31
SS18-210ENST00000578700 C6orf226Q5I0X4 101 aa6.85□□□□□ -1.31
SS18-210ENST00000578700 Q6ZVH6 145 aa6.85□□□□□ -1.31
SS18-210ENST00000578700 C5orf38Q86SI9 138 aa6.85□□□□□ -1.31
SS18-210ENST00000578700 WFDC10BQ8IUB3 73 aa6.85□□□□□ -1.31
SS18-210ENST00000578700 UBE2WQ96B02 151 aa6.85□□□□□ -1.31
SS18-210ENST00000578700 Q9H8V8 135 aa6.85□□□□□ -1.31
SS18-210ENST00000578700 IGLV10-54A0A075B6I4 117 aa6.84□□□□□ -1.31
SS18-210ENST00000578700 TIMM17BO60830 172 aa6.84□□□□□ -1.31
SS18-210ENST00000578700 FUSP35637 526 aaKnown RBP eCLIP6.84□□□□□ -1.31
SS18-210ENST00000578700 LINC01556Q5JQF7 62 aa6.84□□□□□ -1.31
SS18-210ENST00000578700 MEIG1Q5JSS6 88 aa6.84□□□□□ -1.31
SS18-210ENST00000578700 CFAP161Q6P656 301 aa6.84□□□□□ -1.31
SS18-210ENST00000578700 PRR34Q9NV39 138 aa6.84□□□□□ -1.31
SS18-210ENST00000578700 CKS1BP61024 79 aa6.83□□□□□ -1.32
SS18-210ENST00000578700 RPL24P83731 157 aaKnown RBP6.83□□□□□ -1.32
SS18-210ENST00000578700 C10orf126Q8N4M7 172 aa6.83□□□□□ -1.32
SS18-210ENST00000578700 GAGE12HA6NDE8 117 aa6.82□□□□□ -1.32
SS18-210ENST00000578700 IFITM1P13164 125 aa6.82□□□□□ -1.32
SS18-210ENST00000578700 CXCL5P42830 114 aa6.82□□□□□ -1.32
SS18-210ENST00000578700 Q8IZM0 81 aa6.82□□□□□ -1.32
SS18-210ENST00000578700 Q8N3U1 123 aa6.82□□□□□ -1.32
SS18-210ENST00000578700 NHP2Q9NX24 153 aaKnown RBP6.82□□□□□ -1.32
SS18-210ENST00000578700 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.81□□□□□ -1.32
SS18-210ENST00000578700 A0A1B0GV90 55 aa6.81□□□□□ -1.32
SS18-210ENST00000578700 DNAH10OSP0CZ25 163 aa6.81□□□□□ -1.32
SS18-210ENST00000578700 FXYD2P54710 66 aa6.81□□□□□ -1.32
SS18-210ENST00000578700 ENHOQ6UWT2 76 aa6.81□□□□□ -1.32
SS18-210ENST00000578700 RMI2Q96E14 147 aa6.81□□□□□ -1.32
SS18-210ENST00000578700 C1orf43Q9BWL3 253 aa6.81□□□□□ -1.32
SS18-210ENST00000578700 SPANXDQ9BXN6 97 aa6.81□□□□□ -1.32
SS18-210ENST00000578700 KRTAP1-5Q9BYS1 174 aa6.81□□□□□ -1.32
SS18-210ENST00000578700 SPANXCQ9NY87 97 aa6.81□□□□□ -1.32
SS18-210ENST00000578700 K7EP13 123 aa6.8□□□□□ -1.32
SS18-210ENST00000578700 TTC32Q5I0X7 151 aa6.8□□□□□ -1.32
SS18-210ENST00000578700 ZNF625Q96I27 306 aaPredicted RBP6.8□□□□□ -1.32
SS18-210ENST00000578700 FOXI1Q12951 378 aa6.79□□□□□ -1.32
SS18-210ENST00000578700 MUSTN1Q8IVN3 82 aa6.79□□□□□ -1.32
SS18-210ENST00000578700 RAB37Q96AX2 223 aa6.79□□□□□ -1.32
SS18-210ENST00000578700 UPK3BQ9BT76 320 aa6.79□□□□□ -1.32
SS18-210ENST00000578700 COX11Q9Y6N1 276 aa6.79□□□□□ -1.32
SS18-210ENST00000578700 FLG2Q5D862 2391 aaPredicted RBP6.78□□□□□ -1.32
SS18-210ENST00000578700 IBA57-AS1B1ANH7 110 aa6.78□□□□□ -1.32
SS18-210ENST00000578700 TAX1BP3O14907 124 aa6.78□□□□□ -1.32
SS18-210ENST00000578700 LINC00158P58513 81 aa6.78□□□□□ -1.32
SS18-210ENST00000578700 Q5VSD8 79 aa6.78□□□□□ -1.32
SS18-210ENST00000578700 IGKV2D-24A0A075B6R9 120 aa6.77□□□□□ -1.33
SS18-210ENST00000578700 C9orf118A6NHY6 69 aa6.77□□□□□ -1.33
SS18-210ENST00000578700 SMR3BP02814 79 aaPredicted RBP6.77□□□□□ -1.33
SS18-210ENST00000578700 XGP55808 180 aa6.77□□□□□ -1.33
SS18-210ENST00000578700 SPAG11BQ08648 103 aa6.77□□□□□ -1.33
SS18-210ENST00000578700 VAMP3Q15836 100 aa6.77□□□□□ -1.33
SS18-210ENST00000578700 LITAFQ99732 161 aa6.77□□□□□ -1.33
SS18-210ENST00000578700 PGPEP1Q9NXJ5 209 aa6.77□□□□□ -1.33
SS18-210ENST00000578700 A0A0U1RRA0 63 aa6.76□□□□□ -1.33
SS18-210ENST00000578700 A0A1B0GWB2 263 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms