RNA–Protein interactions for RNA: ENST00000571409.1

CTDNEP1-206, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 5

Gene CTDNEP1, Length 741 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-206ENST00000571409 LINC01546A6NGU7 62 aa18.63■□□□□ 0.57
CTDNEP1-206ENST00000571409 CKS1BP61024 79 aa18.63■□□□□ 0.57
CTDNEP1-206ENST00000571409 RHEBQ15382 184 aa18.63■□□□□ 0.57
CTDNEP1-206ENST00000571409 Q8IZM0 81 aa18.63■□□□□ 0.57
CTDNEP1-206ENST00000571409 MRPL18Q9H0U6 180 aaKnown RBP18.63■□□□□ 0.57
CTDNEP1-206ENST00000571409 CARHSP1Q9Y2V2 147 aaKnown RBP18.63■□□□□ 0.57
CTDNEP1-206ENST00000571409 TNXBP22105 4242 aa18.62■□□□□ 0.57
CTDNEP1-206ENST00000571409 FABP9Q0Z7S8 132 aa18.61■□□□□ 0.57
CTDNEP1-206ENST00000571409 KRTAP7-1Q8IUC3 87 aa18.6■□□□□ 0.57
CTDNEP1-206ENST00000571409 LINC01549A6NIU2 74 aa18.59■□□□□ 0.57
CTDNEP1-206ENST00000571409 C9orf129Q5T035 196 aaKnown RBP18.59■□□□□ 0.57
CTDNEP1-206ENST00000571409 FA2HQ7L5A8 372 aa18.58■□□□□ 0.56
CTDNEP1-206ENST00000571409 KRTAP11-1Q8IUC1 163 aa18.58■□□□□ 0.56
CTDNEP1-206ENST00000571409 M0QXV9 152 aa18.57■□□□□ 0.56
CTDNEP1-206ENST00000571409 LINC00469Q8N7U9 141 aa18.57■□□□□ 0.56
CTDNEP1-206ENST00000571409 SMCO4Q9NRQ5 59 aa18.57■□□□□ 0.56
CTDNEP1-206ENST00000571409 KRTAP10-8P60410 259 aa18.56■□□□□ 0.56
CTDNEP1-206ENST00000571409 TINCRA0A1B0GVN0 87 aa18.54■□□□□ 0.56
CTDNEP1-206ENST00000571409 IGLV7-43P04211 117 aa18.54■□□□□ 0.56
CTDNEP1-206ENST00000571409 ODF1Q14990 250 aa18.54■□□□□ 0.56
CTDNEP1-206ENST00000571409 SMIM1B2RUZ4 78 aa18.52■□□□□ 0.56
CTDNEP1-206ENST00000571409 F8VRH5 84 aa18.52■□□□□ 0.56
CTDNEP1-206ENST00000571409 UBE2BP63146 152 aa18.52■□□□□ 0.56
CTDNEP1-206ENST00000571409 CST9LQ9H4G1 147 aa18.52■□□□□ 0.56
CTDNEP1-206ENST00000571409 CXCL5P42830 114 aa18.51■□□□□ 0.55
CTDNEP1-206ENST00000571409 IGLV5-45A0A087WSX0 123 aa18.5■□□□□ 0.55
CTDNEP1-206ENST00000571409 PMVKQ15126 192 aa18.49■□□□□ 0.55
CTDNEP1-206ENST00000571409 PDZD11Q5EBL8 140 aa18.49■□□□□ 0.55
CTDNEP1-206ENST00000571409 COX7B2Q8TF08 81 aa18.47■□□□□ 0.55
CTDNEP1-206ENST00000571409 DIRC1Q969H9 104 aa18.47■□□□□ 0.55
CTDNEP1-206ENST00000571409 XAGE1AQ9HD64 81 aa18.47■□□□□ 0.55
CTDNEP1-206ENST00000571409 TRAPPC1Q9Y5R8 145 aa18.47■□□□□ 0.55
CTDNEP1-206ENST00000571409 APOC3P02656 99 aa18.46■□□□□ 0.55
CTDNEP1-206ENST00000571409 SPINK8P0C7L1 97 aa18.44■□□□□ 0.54
CTDNEP1-206ENST00000571409 C18orf32Q8TCD1 76 aa18.44■□□□□ 0.54
CTDNEP1-206ENST00000571409 A0A096LNJ9 63 aa18.42■□□□□ 0.54
CTDNEP1-206ENST00000571409 URB1-AS1Q96HZ7 61 aa18.42■□□□□ 0.54
CTDNEP1-206ENST00000571409 H0Y9J4 135 aa18.41■□□□□ 0.54
CTDNEP1-206ENST00000571409 C22orf24Q9Y442 160 aa18.41■□□□□ 0.54
CTDNEP1-206ENST00000571409 SNAPINO95295 136 aa18.4■□□□□ 0.54
CTDNEP1-206ENST00000571409 LINC00614P0C842 121 aa18.4■□□□□ 0.54
CTDNEP1-206ENST00000571409 NDUFA5Q16718 116 aa18.4■□□□□ 0.54
CTDNEP1-206ENST00000571409 SVBPQ8N300 66 aa18.4■□□□□ 0.54
CTDNEP1-206ENST00000571409 H3BRM9 83 aa18.38■□□□□ 0.53
CTDNEP1-206ENST00000571409 NDUFA6P56556 154 aa18.38■□□□□ 0.53
CTDNEP1-206ENST00000571409 UBR4Q5T4S7 5183 aa18.38■□□□□ 0.53
CTDNEP1-206ENST00000571409 HBDP02042 147 aa18.36■□□□□ 0.53
CTDNEP1-206ENST00000571409 PMCHL1Q16048 86 aa18.36■□□□□ 0.53
CTDNEP1-206ENST00000571409 IGLC3P0DOY3 106 aa18.35■□□□□ 0.53
CTDNEP1-206ENST00000571409 LBHQ53QV2 105 aaPredicted RBP18.35■□□□□ 0.53
CTDNEP1-206ENST00000571409 RAB5BP61020 215 aa18.33■□□□□ 0.52
CTDNEP1-206ENST00000571409 PRR26Q8N8Z3 221 aa18.33■□□□□ 0.52
CTDNEP1-206ENST00000571409 MRPL55Q7Z7F7 128 aaKnown RBP18.32■□□□□ 0.52
CTDNEP1-206ENST00000571409 TP73-AS1Q9UF72 201 aa18.32■□□□□ 0.52
CTDNEP1-206ENST00000571409 NUPR1O60356 82 aa18.3■□□□□ 0.52
CTDNEP1-206ENST00000571409 ATP5LO75964 103 aa18.29■□□□□ 0.52
CTDNEP1-206ENST00000571409 ZNF22P17026 224 aaPredicted RBP18.29■□□□□ 0.52
CTDNEP1-206ENST00000571409 IGLV5-39A0A0G2JS06 123 aa18.28■□□□□ 0.52
CTDNEP1-206ENST00000571409 KRTAP1-4P0C5Y4 121 aa18.27■□□□□ 0.52
CTDNEP1-206ENST00000571409 ZNF861PO60384 105 aa18.26■□□□□ 0.51
CTDNEP1-206ENST00000571409 YPEL4Q96NS1 127 aa18.26■□□□□ 0.51
CTDNEP1-206ENST00000571409 BAGE3Q86Y29 109 aa18.24■□□□□ 0.51
CTDNEP1-206ENST00000571409 LINC00167Q96N53 147 aa18.24■□□□□ 0.51
CTDNEP1-206ENST00000571409 IGLV1-50A0A075B6I6 118 aa18.23■□□□□ 0.51
CTDNEP1-206ENST00000571409 C11orf86A6NJI1 115 aa18.22■□□□□ 0.51
CTDNEP1-206ENST00000571409 PFN2P35080 140 aa18.22■□□□□ 0.51
CTDNEP1-206ENST00000571409 RPL37AP8A6NKH3 93 aa18.21■□□□□ 0.51
CTDNEP1-206ENST00000571409 GAGE10A6NGK3 116 aa18.2■□□□□ 0.5
CTDNEP1-206ENST00000571409 TMEM170BQ5T4T1 132 aa18.2■□□□□ 0.5
CTDNEP1-206ENST00000571409 LRP2P98164 4655 aa18.19■□□□□ 0.5
CTDNEP1-206ENST00000571409 IGLV5-37A0A075B6J1 123 aa18.19■□□□□ 0.5
CTDNEP1-206ENST00000571409 NKAPP1Q8N9T2 125 aa18.19■□□□□ 0.5
CTDNEP1-206ENST00000571409 BCE1O60756 84 aa18.17■□□□□ 0.5
CTDNEP1-206ENST00000571409 CHCHD1Q96BP2 118 aaKnown RBP18.17■□□□□ 0.5
CTDNEP1-206ENST00000571409 ERG28Q9UKR5 140 aa18.17■□□□□ 0.5
CTDNEP1-206ENST00000571409 CHTOPQ9Y3Y2 248 aaKnown RBP18.17■□□□□ 0.5
CTDNEP1-206ENST00000571409 RPL28P46779 137 aaKnown RBP18.15■□□□□ 0.5
CTDNEP1-206ENST00000571409 ZNF625Q96I27 306 aaPredicted RBP18.14■□□□□ 0.49
CTDNEP1-206ENST00000571409 RPL13AP40429 203 aaKnown RBP18.13■□□□□ 0.49
CTDNEP1-206ENST00000571409 CBLN2Q8IUK8 224 aa18.13■□□□□ 0.49
CTDNEP1-206ENST00000571409 COX17Q14061 63 aa18.12■□□□□ 0.49
CTDNEP1-206ENST00000571409 SCO1O75880 301 aa18.11■□□□□ 0.49
CTDNEP1-206ENST00000571409 IFI27L1Q96BM0 104 aa18.11■□□□□ 0.49
CTDNEP1-206ENST00000571409 SND1-IT1Q9HBX3 110 aa18.11■□□□□ 0.49
CTDNEP1-206ENST00000571409 SFTA2Q6UW10 78 aa18.1■□□□□ 0.49
CTDNEP1-206ENST00000571409 TRAV12-1A0A0B4J245 112 aa18.09■□□□□ 0.49
CTDNEP1-206ENST00000571409 IGKV2-28A0A075B6P5 120 aa18.07■□□□□ 0.48
CTDNEP1-206ENST00000571409 IGKV2D-28P01615 120 aa18.07■□□□□ 0.48
CTDNEP1-206ENST00000571409 VPREB1P12018 145 aa18.07■□□□□ 0.48
CTDNEP1-206ENST00000571409 TMEM223A0PJW6 202 aa18.05■□□□□ 0.48
CTDNEP1-206ENST00000571409 HSBP1O75506 76 aa18.05■□□□□ 0.48
CTDNEP1-206ENST00000571409 UBE2AP49459 152 aa18.04■□□□□ 0.48
CTDNEP1-206ENST00000571409 FAM19A2Q8N3H0 131 aa18.04■□□□□ 0.48
CTDNEP1-206ENST00000571409 RPL24P83731 157 aaKnown RBP18.03■□□□□ 0.48
CTDNEP1-206ENST00000571409 TRGC2P03986 189 aa18.02■□□□□ 0.48
CTDNEP1-206ENST00000571409 KRTAP13-1Q8IUC0 172 aa18.01■□□□□ 0.47
CTDNEP1-206ENST00000571409 LINC00158P58513 81 aa18■□□□□ 0.47
CTDNEP1-206ENST00000571409 Q8NDZ9 215 aa18■□□□□ 0.47
CTDNEP1-206ENST00000571409 A0A087X002 238 aa17.98■□□□□ 0.47
CTDNEP1-206ENST00000571409 A0A0U1RRA0 63 aa17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms