RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 LINC00469Q8N7U9 141 aa10.22□□□□□ -0.77
CLN3-216ENST00000565316 CDKN2A-AS1Q9UH64 79 aa10.22□□□□□ -0.77
CLN3-216ENST00000565316 NUPR1O60356 82 aa10.21□□□□□ -0.78
CLN3-216ENST00000565316 LBHQ53QV2 105 aaPredicted RBP10.21□□□□□ -0.78
CLN3-216ENST00000565316 TIMM17AQ99595 171 aa10.21□□□□□ -0.78
CLN3-216ENST00000565316 XAGE1AQ9HD64 81 aa10.21□□□□□ -0.78
CLN3-216ENST00000565316 F8VRH5 84 aa10.2□□□□□ -0.78
CLN3-216ENST00000565316 G0S2P27469 103 aa10.2□□□□□ -0.78
CLN3-216ENST00000565316 TOMM6Q96B49 74 aa10.2□□□□□ -0.78
CLN3-216ENST00000565316 TP73-AS1Q9UF72 201 aa10.2□□□□□ -0.78
CLN3-216ENST00000565316 CTDSP1Q9GZU7 261 aa10.19□□□□□ -0.78
CLN3-216ENST00000565316 GEMIN7Q9H840 131 aaKnown RBP10.18□□□□□ -0.78
CLN3-216ENST00000565316 CXCL5P42830 114 aa10.17□□□□□ -0.78
CLN3-216ENST00000565316 ERASQ7Z444 233 aa10.16□□□□□ -0.78
CLN3-216ENST00000565316 MRPL55Q7Z7F7 128 aaKnown RBP10.16□□□□□ -0.78
CLN3-216ENST00000565316 SMIM1B2RUZ4 78 aa10.15□□□□□ -0.78
CLN3-216ENST00000565316 RAB14P61106 215 aa10.15□□□□□ -0.78
CLN3-216ENST00000565316 MUC2Q02817 5179 aa10.15□□□□□ -0.78
CLN3-216ENST00000565316 IGLV5-45A0A087WSX0 123 aa10.14□□□□□ -0.79
CLN3-216ENST00000565316 BCE1O60756 84 aa10.14□□□□□ -0.79
CLN3-216ENST00000565316 PRR4Q16378 134 aa10.14□□□□□ -0.79
CLN3-216ENST00000565316 KIAA1644Q3SXP7 199 aa10.14□□□□□ -0.79
CLN3-216ENST00000565316 PDZD11Q5EBL8 140 aa10.14□□□□□ -0.79
CLN3-216ENST00000565316 TINCRA0A1B0GVN0 87 aa10.13□□□□□ -0.79
CLN3-216ENST00000565316 LINC01546A6NGU7 62 aa10.13□□□□□ -0.79
CLN3-216ENST00000565316 RPL28P46779 137 aaKnown RBP10.13□□□□□ -0.79
CLN3-216ENST00000565316 SCGB3A1Q96QR1 104 aa10.13□□□□□ -0.79
CLN3-216ENST00000565316 ADCYAP1P18509 176 aa10.12□□□□□ -0.79
CLN3-216ENST00000565316 COX7B2Q8TF08 81 aa10.12□□□□□ -0.79
CLN3-216ENST00000565316 LINC00167Q96N53 147 aa10.12□□□□□ -0.79
CLN3-216ENST00000565316 TRAV9-1A0A075B6T8 112 aa10.11□□□□□ -0.79
CLN3-216ENST00000565316 A0A087X002 238 aa10.1□□□□□ -0.79
CLN3-216ENST00000565316 LINC01549A6NIU2 74 aa10.1□□□□□ -0.79
CLN3-216ENST00000565316 CST9LQ9H4G1 147 aa10.1□□□□□ -0.79
CLN3-216ENST00000565316 IGLV5-37A0A075B6J1 123 aa10.09□□□□□ -0.79
CLN3-216ENST00000565316 IFITM2Q01629 132 aa10.09□□□□□ -0.79
CLN3-216ENST00000565316 CLLU1Q5K131 121 aa10.09□□□□□ -0.79
CLN3-216ENST00000565316 RPL37AP8A6NKH3 93 aa10.07□□□□□ -0.8
CLN3-216ENST00000565316 CRYGAP11844 174 aa10.07□□□□□ -0.8
CLN3-216ENST00000565316 KRTAP13-1Q8IUC0 172 aa10.07□□□□□ -0.8
CLN3-216ENST00000565316 GNB1LQ9BYB4 327 aa10.07□□□□□ -0.8
CLN3-216ENST00000565316 TSPAN13O95857 204 aa10.07□□□□□ -0.8
CLN3-216ENST00000565316 SPINK8P0C7L1 97 aa10.07□□□□□ -0.8
CLN3-216ENST00000565316 MRPL18Q9H0U6 180 aaKnown RBP10.07□□□□□ -0.8
CLN3-216ENST00000565316 TMEM218A2RU14 115 aa10.06□□□□□ -0.8
CLN3-216ENST00000565316 PMVKQ15126 192 aa10.06□□□□□ -0.8
CLN3-216ENST00000565316 UQCC3Q6UW78 93 aa10.06□□□□□ -0.8
CLN3-216ENST00000565316 GAGE10A6NGK3 116 aa10.05□□□□□ -0.8
CLN3-216ENST00000565316 RAB5BP61020 215 aa10.05□□□□□ -0.8
CLN3-216ENST00000565316 TYMSOSQ8TAI1 123 aa10.05□□□□□ -0.8
CLN3-216ENST00000565316 IGLV5-39A0A0G2JS06 123 aa10.03□□□□□ -0.8
CLN3-216ENST00000565316 KRTAP13-2Q52LG2 175 aa10.03□□□□□ -0.8
CLN3-216ENST00000565316 NKAPP1Q8N9T2 125 aa10.03□□□□□ -0.8
CLN3-216ENST00000565316 ANAPC11Q9NYG5 84 aa10.03□□□□□ -0.8
CLN3-216ENST00000565316 H3BRM9 83 aa10.02□□□□□ -0.81
CLN3-216ENST00000565316 S100PP25815 95 aa10.02□□□□□ -0.81
CLN3-216ENST00000565316 COX19Q49B96 90 aa10.02□□□□□ -0.81
CLN3-216ENST00000565316 FAM229BQ4G0N7 80 aa10.02□□□□□ -0.81
CLN3-216ENST00000565316 ATP5LO75964 103 aa10.01□□□□□ -0.81
CLN3-216ENST00000565316 IGLC3P0DOY3 106 aa10.01□□□□□ -0.81
CLN3-216ENST00000565316 UBE2AP49459 152 aa10.01□□□□□ -0.81
CLN3-216ENST00000565316 FA2HQ7L5A8 372 aa10.01□□□□□ -0.81
CLN3-216ENST00000565316 SEC11CQ9BY50 192 aa10□□□□□ -0.81
CLN3-216ENST00000565316 SCO1O75880 301 aa9.99□□□□□ -0.81
CLN3-216ENST00000565316 SMCO4Q9NRQ5 59 aa9.99□□□□□ -0.81
CLN3-216ENST00000565316 IGKV2-28A0A075B6P5 120 aa9.98□□□□□ -0.81
CLN3-216ENST00000565316 IGKV2D-28P01615 120 aa9.98□□□□□ -0.81
CLN3-216ENST00000565316 FABP9Q0Z7S8 132 aa9.98□□□□□ -0.81
CLN3-216ENST00000565316 A0A096LNJ9 63 aa9.97□□□□□ -0.81
CLN3-216ENST00000565316 VPREB1P12018 145 aa9.97□□□□□ -0.81
CLN3-216ENST00000565316 PFN2P35080 140 aa9.97□□□□□ -0.81
CLN3-216ENST00000565316 SND1-IT1Q9HBX3 110 aa9.97□□□□□ -0.81
CLN3-216ENST00000565316 ZNF22P17026 224 aaPredicted RBP9.96□□□□□ -0.82
CLN3-216ENST00000565316 A0A0U1RQV1 116 aa9.95□□□□□ -0.82
CLN3-216ENST00000565316 COX17Q14061 63 aa9.95□□□□□ -0.82
CLN3-216ENST00000565316 LINC00304Q8N9R0 145 aa9.95□□□□□ -0.82
CLN3-216ENST00000565316 ERG28Q9UKR5 140 aa9.95□□□□□ -0.82
CLN3-216ENST00000565316 C10orf91Q5T1B1 145 aa9.94□□□□□ -0.82
CLN3-216ENST00000565316 URB1-AS1Q96HZ7 61 aa9.94□□□□□ -0.82
CLN3-216ENST00000565316 TMEM126AQ9H061 195 aa9.94□□□□□ -0.82
CLN3-216ENST00000565316 TMEM238C9JI98 176 aa9.93□□□□□ -0.82
CLN3-216ENST00000565316 CTAG1AP78358 180 aa9.93□□□□□ -0.82
CLN3-216ENST00000565316 PRLHP81277 87 aa9.93□□□□□ -0.82
CLN3-216ENST00000565316 RPL24P83731 157 aaKnown RBP9.93□□□□□ -0.82
CLN3-216ENST00000565316 MUC17Q685J3 4493 aa9.93□□□□□ -0.82
CLN3-216ENST00000565316 FAT4Q6V0I7 4981 aa9.92□□□□□ -0.82
CLN3-216ENST00000565316 M0R378 163 aa9.92□□□□□ -0.82
CLN3-216ENST00000565316 NDUFA6P56556 154 aa9.92□□□□□ -0.82
CLN3-216ENST00000565316 Q8NDZ9 215 aa9.92□□□□□ -0.82
CLN3-216ENST00000565316 IGKV2D-26A0A0A0MRZ7 120 aa9.91□□□□□ -0.82
CLN3-216ENST00000565316 LINC00614P0C842 121 aa9.91□□□□□ -0.82
CLN3-216ENST00000565316 RHEBQ15382 184 aa9.91□□□□□ -0.82
CLN3-216ENST00000565316 FAM19A1Q7Z5A9 133 aa9.91□□□□□ -0.82
CLN3-216ENST00000565316 C18orf32Q8TCD1 76 aa9.91□□□□□ -0.82
CLN3-216ENST00000565316 HBDP02042 147 aa9.9□□□□□ -0.82
CLN3-216ENST00000565316 SFTA2Q6UW10 78 aa9.9□□□□□ -0.82
CLN3-216ENST00000565316 PLEKHB2Q96CS7 222 aa9.9□□□□□ -0.82
CLN3-216ENST00000565316 RETNLBQ9BQ08 111 aa9.9□□□□□ -0.82
CLN3-216ENST00000565316 C11orf86A6NJI1 115 aa9.89□□□□□ -0.83
CLN3-216ENST00000565316 ZNF625Q96I27 306 aaPredicted RBP9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms