RNA–Protein interactions for RNA: ENST00000564841.1

LINC00554-201, long intergenic non-protein coding RNA 554, humanhuman

BASIC

Gene LINC00554, Length 3,011 nt, Biotype antisense RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00554-201ENST00000564841 IGHV3-53P01767 116 aa11.54□□□□□ -0.56
LINC00554-201ENST00000564841 ESM1Q9NQ30 184 aa11.54□□□□□ -0.56
LINC00554-201ENST00000564841 GHRHP01286 108 aa11.53□□□□□ -0.56
LINC00554-201ENST00000564841 RPL36AP83881 106 aaKnown RBP11.53□□□□□ -0.56
LINC00554-201ENST00000564841 C20orf197Q8N268 126 aa11.53□□□□□ -0.56
LINC00554-201ENST00000564841 RPL36ALQ969Q0 106 aaKnown RBP11.53□□□□□ -0.56
LINC00554-201ENST00000564841 K7EMT4 169 aa11.53□□□□□ -0.56
LINC00554-201ENST00000564841 UBE2E2Q96LR5 201 aa11.52□□□□□ -0.57
LINC00554-201ENST00000564841 LINC00158P58513 81 aa11.52□□□□□ -0.57
LINC00554-201ENST00000564841 NTM-AS1Q6ZSK4 140 aa11.52□□□□□ -0.57
LINC00554-201ENST00000564841 PFN2P35080 140 aa11.51□□□□□ -0.57
LINC00554-201ENST00000564841 ATRQ13535 2644 aa11.51□□□□□ -0.57
LINC00554-201ENST00000564841 TRAV13-2A0A0B4J235 113 aa11.51□□□□□ -0.57
LINC00554-201ENST00000564841 ENHOQ6UWT2 76 aa11.51□□□□□ -0.57
LINC00554-201ENST00000564841 SS18Q15532 418 aa11.5□□□□□ -0.57
LINC00554-201ENST00000564841 XCL2Q9UBD3 114 aa11.5□□□□□ -0.57
LINC00554-201ENST00000564841 CCL18P55774 89 aa11.49□□□□□ -0.57
LINC00554-201ENST00000564841 C11orf68Q9H3H3 251 aaKnown RBP11.49□□□□□ -0.57
LINC00554-201ENST00000564841 HIVEP1P15822 2718 aa11.49□□□□□ -0.57
LINC00554-201ENST00000564841 RNASE1P07998 156 aaKnown RBP11.49□□□□□ -0.57
LINC00554-201ENST00000564841 COPS9Q8WXC6 57 aa11.48□□□□□ -0.57
LINC00554-201ENST00000564841 OBSCN-AS1Q96MR7 158 aa11.48□□□□□ -0.57
LINC00554-201ENST00000564841 LINC00336Q6ZUF6 198 aa11.47□□□□□ -0.57
LINC00554-201ENST00000564841 TMEM243Q9BU79 118 aa11.47□□□□□ -0.57
LINC00554-201ENST00000564841 DYNLRB2Q8TF09 96 aa11.46□□□□□ -0.57
LINC00554-201ENST00000564841 PAX4O43316 350 aa11.46□□□□□ -0.57
LINC00554-201ENST00000564841 PRR3P79522 188 aaKnown RBP11.46□□□□□ -0.58
LINC00554-201ENST00000564841 ZNF415Q09FC8 603 aa11.46□□□□□ -0.58
LINC00554-201ENST00000564841 C11orf72Q8NBR9 251 aa11.46□□□□□ -0.58
LINC00554-201ENST00000564841 CDC42SE2Q9NRR3 84 aa11.46□□□□□ -0.58
LINC00554-201ENST00000564841 VWFP04275 2813 aa11.46□□□□□ -0.58
LINC00554-201ENST00000564841 NSD1Q96L73 2696 aaPredicted RBP11.45□□□□□ -0.58
LINC00554-201ENST00000564841 KRTAP1-1Q07627 177 aa11.44□□□□□ -0.58
LINC00554-201ENST00000564841 Q6ZTI0 123 aa11.44□□□□□ -0.58
LINC00554-201ENST00000564841 TENM1Q9UKZ4 2725 aa11.43□□□□□ -0.58
LINC00554-201ENST00000564841 ANK3Q12955 4377 aaKnown RBP11.43□□□□□ -0.58
LINC00554-201ENST00000564841 TRGV1A0A0A0MS02 117 aa11.43□□□□□ -0.58
LINC00554-201ENST00000564841 TMEM89A2RUT3 159 aa11.43□□□□□ -0.58
LINC00554-201ENST00000564841 COX7B2Q8TF08 81 aa11.43□□□□□ -0.58
LINC00554-201ENST00000564841 XCL1P47992 114 aa11.42□□□□□ -0.58
LINC00554-201ENST00000564841 PF4P02776 101 aa11.42□□□□□ -0.58
LINC00554-201ENST00000564841 CCKP06307 115 aa11.42□□□□□ -0.58
LINC00554-201ENST00000564841 SNURFQ9Y675 71 aa11.42□□□□□ -0.58
LINC00554-201ENST00000564841 F8P00451 2351 aa11.42□□□□□ -0.58
LINC00554-201ENST00000564841 LOC100131303A0A0U1RQF7 123 aa11.4□□□□□ -0.58
LINC00554-201ENST00000564841 H0YGX0 51 aa11.4□□□□□ -0.58
LINC00554-201ENST00000564841 ORMDL1Q9P0S3 153 aa11.4□□□□□ -0.58
LINC00554-201ENST00000564841 FAM236DA0A1B0GTK5 79 aa11.4□□□□□ -0.58
LINC00554-201ENST00000564841 FAM236CP0DP71 79 aa11.4□□□□□ -0.58
LINC00554-201ENST00000564841 PKIGQ9Y2B9 76 aa11.39□□□□□ -0.59
LINC00554-201ENST00000564841 LINC01006Q8NI28 216 aa11.39□□□□□ -0.59
LINC00554-201ENST00000564841 C4orf3Q8WVX3 66 aa11.39□□□□□ -0.59
LINC00554-201ENST00000564841 WFDC10AQ9H1F0 79 aa11.39□□□□□ -0.59
LINC00554-201ENST00000564841 MAP6D1Q9H9H5 199 aa11.39□□□□□ -0.59
LINC00554-201ENST00000564841 M0R2N4 97 aa11.38□□□□□ -0.59
LINC00554-201ENST00000564841 CCL24O00175 119 aa11.38□□□□□ -0.59
LINC00554-201ENST00000564841 C1orf43Q9BWL3 253 aa11.38□□□□□ -0.59
LINC00554-201ENST00000564841 OVOL2Q9BRP0 275 aa11.37□□□□□ -0.59
LINC00554-201ENST00000564841 H7BZZ5 65 aa11.37□□□□□ -0.59
LINC00554-201ENST00000564841 RMI2Q96E14 147 aa11.36□□□□□ -0.59
LINC00554-201ENST00000564841 IGLV4-60A0A075B6I1 120 aa11.36□□□□□ -0.59
LINC00554-201ENST00000564841 FAM19A3Q7Z5A8 133 aa11.36□□□□□ -0.59
LINC00554-201ENST00000564841 UBE2L6O14933 153 aa11.35□□□□□ -0.59
LINC00554-201ENST00000564841 NDUFC2O95298 119 aa11.35□□□□□ -0.59
LINC00554-201ENST00000564841 LYPD5Q6UWN5 251 aa11.35□□□□□ -0.59
LINC00554-201ENST00000564841 TRAV10A0A0B4J240 114 aa11.35□□□□□ -0.59
LINC00554-201ENST00000564841 LY6G6DO95868 133 aa11.35□□□□□ -0.59
LINC00554-201ENST00000564841 RPL35AP18077 110 aaKnown RBP11.35□□□□□ -0.59
LINC00554-201ENST00000564841 LINC00474Q9P2X8 69 aa11.35□□□□□ -0.59
LINC00554-201ENST00000564841 DEFB114Q30KQ6 69 aa11.34□□□□□ -0.59
LINC00554-201ENST00000564841 INAFM1C9JVW0 142 aa11.34□□□□□ -0.59
LINC00554-201ENST00000564841 K7EQD1 137 aa11.33□□□□□ -0.6
LINC00554-201ENST00000564841 TMEM86BQ8N661 226 aa11.33□□□□□ -0.6
LINC00554-201ENST00000564841 FP248Q71RG6 208 aaPredicted RBP11.33□□□□□ -0.6
LINC00554-201ENST00000564841 A8MTW9 85 aa11.32□□□□□ -0.6
LINC00554-201ENST00000564841 TRBV6-4A0A1B0GX49 114 aa11.31□□□□□ -0.6
LINC00554-201ENST00000564841 ODF3L2Q3SX64 289 aa11.31□□□□□ -0.6
LINC00554-201ENST00000564841 SPATA3Q8NHX4 192 aa11.31□□□□□ -0.6
LINC00554-201ENST00000564841 MRAPQ8TCY5 172 aa11.31□□□□□ -0.6
LINC00554-201ENST00000564841 NOP10Q9NPE3 64 aaKnown RBP11.31□□□□□ -0.6
LINC00554-201ENST00000564841 NANOS2P60321 138 aaKnown RBP11.3□□□□□ -0.6
LINC00554-201ENST00000564841 STHQ8IWL8 128 aa11.3□□□□□ -0.6
LINC00554-201ENST00000564841 HAMPP81172 84 aa11.3□□□□□ -0.6
LINC00554-201ENST00000564841 INSP01308 110 aa11.3□□□□□ -0.6
LINC00554-201ENST00000564841 Q8N814 137 aa11.3□□□□□ -0.6
LINC00554-201ENST00000564841 PRO0628Q9UI54 55 aa11.3□□□□□ -0.6
LINC00554-201ENST00000564841 C1orf158Q8N1D5 194 aa11.29□□□□□ -0.6
LINC00554-201ENST00000564841 IGHV3OR16-9A0A0B4J2B5 98 aa11.29□□□□□ -0.6
LINC00554-201ENST00000564841 F8WEM9 126 aa11.29□□□□□ -0.6
LINC00554-201ENST00000564841 UBL5Q9BZL1 73 aa11.29□□□□□ -0.6
LINC00554-201ENST00000564841 C16orf95Q9H693 158 aa11.28□□□□□ -0.6
LINC00554-201ENST00000564841 NDUFC2-KCTD14E9PQ53 114 aa11.28□□□□□ -0.6
LINC00554-201ENST00000564841 CLPSL2Q6UWE3 100 aa11.28□□□□□ -0.6
LINC00554-201ENST00000564841 SCXQ7RTU7 201 aa11.28□□□□□ -0.6
LINC00554-201ENST00000564841 SERP1Q9Y6X1 66 aa11.28□□□□□ -0.6
LINC00554-201ENST00000564841 A0A0U1RQV1 116 aa11.27□□□□□ -0.6
LINC00554-201ENST00000564841 C6orf226Q5I0X4 101 aa11.27□□□□□ -0.6
LINC00554-201ENST00000564841 IBA57-AS1B1ANH7 110 aa11.27□□□□□ -0.61
LINC00554-201ENST00000564841 TRRAPQ9Y4A5 3859 aa11.27□□□□□ -0.61
LINC00554-201ENST00000564841 S100A7L2Q5SY68 101 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms