RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 FAM19A1Q7Z5A9 133 aa9.49□□□□□ -0.89
CLK3-206ENST00000562078 Q9UF83 564 aa9.49□□□□□ -0.89
CLK3-206ENST00000562078 H7BZZ5 65 aa9.49□□□□□ -0.89
CLK3-206ENST00000562078 COX6A2Q02221 97 aa9.49□□□□□ -0.89
CLK3-206ENST00000562078 OBSCN-AS1Q96MR7 158 aa9.48□□□□□ -0.89
CLK3-206ENST00000562078 SPINK13Q1W4C9 94 aa9.47□□□□□ -0.89
CLK3-206ENST00000562078 LYPD5Q6UWN5 251 aa9.47□□□□□ -0.89
CLK3-206ENST00000562078 C4orf3Q8WVX3 66 aa9.47□□□□□ -0.89
CLK3-206ENST00000562078 A0A1W2PRX2 142 aa9.46□□□□□ -0.89
CLK3-206ENST00000562078 ENHOQ6UWT2 76 aa9.46□□□□□ -0.89
CLK3-206ENST00000562078 CHCHD7Q9BUK0 85 aa9.46□□□□□ -0.89
CLK3-206ENST00000562078 BRK1Q8WUW1 75 aa9.46□□□□□ -0.9
CLK3-206ENST00000562078 LINC00467Q9BRT7 94 aa9.46□□□□□ -0.9
CLK3-206ENST00000562078 LINC00474Q9P2X8 69 aa9.46□□□□□ -0.9
CLK3-206ENST00000562078 SLPIP03973 132 aa9.45□□□□□ -0.9
CLK3-206ENST00000562078 LINC00337Q8N6G1 96 aa9.45□□□□□ -0.9
CLK3-206ENST00000562078 C1orf195Q5TG92 126 aa9.44□□□□□ -0.9
CLK3-206ENST00000562078 C11orf44Q8N8P7 122 aa9.44□□□□□ -0.9
CLK3-206ENST00000562078 COPS9Q8WXC6 57 aa9.44□□□□□ -0.9
CLK3-206ENST00000562078 IGLV5-45A0A087WSX0 123 aa9.44□□□□□ -0.9
CLK3-206ENST00000562078 LINC01006Q8NI28 216 aa9.44□□□□□ -0.9
CLK3-206ENST00000562078 SMIM26A0A096LP01 95 aa9.43□□□□□ -0.9
CLK3-206ENST00000562078 IGHV3-38A0A0C4DH36 116 aa9.43□□□□□ -0.9
CLK3-206ENST00000562078 IGLV5-39A0A0G2JS06 123 aa9.43□□□□□ -0.9
CLK3-206ENST00000562078 KNCNA6PVL3 124 aa9.43□□□□□ -0.9
CLK3-206ENST00000562078 LECT2O14960 151 aa9.43□□□□□ -0.9
CLK3-206ENST00000562078 CRPP02741 224 aa9.43□□□□□ -0.9
CLK3-206ENST00000562078 DEFB131AP59861 70 aa9.43□□□□□ -0.9
CLK3-206ENST00000562078 SMIM11BQ8TCY0 68 aa9.43□□□□□ -0.9
CLK3-206ENST00000562078 FN1P02751 2386 aaKnown RBP9.43□□□□□ -0.9
CLK3-206ENST00000562078 MIR7-3HGQ8N6C7 128 aa9.42□□□□□ -0.9
CLK3-206ENST00000562078 DYNLRB2Q8TF09 96 aa9.42□□□□□ -0.9
CLK3-206ENST00000562078 SNURFQ9Y675 71 aa9.42□□□□□ -0.9
CLK3-206ENST00000562078 F8P00451 2351 aa9.42□□□□□ -0.9
CLK3-206ENST00000562078 IGKV2-28A0A075B6P5 120 aa9.42□□□□□ -0.9
CLK3-206ENST00000562078 TRAV13-2A0A0B4J235 113 aa9.42□□□□□ -0.9
CLK3-206ENST00000562078 IGKV2D-28P01615 120 aa9.42□□□□□ -0.9
CLK3-206ENST00000562078 IGHV1OR15-1A0A075B7D0 117 aa9.41□□□□□ -0.9
CLK3-206ENST00000562078 NIPBLQ6KC79 2804 aaeCLIP9.41□□□□□ -0.9
CLK3-206ENST00000562078 SMIM1B2RUZ4 78 aa9.41□□□□□ -0.9
CLK3-206ENST00000562078 CCKP06307 115 aa9.41□□□□□ -0.9
CLK3-206ENST00000562078 SS18Q15532 418 aa9.41□□□□□ -0.9
CLK3-206ENST00000562078 LINC00242Q5T6M2 205 aa9.4□□□□□ -0.9
CLK3-206ENST00000562078 RMI2Q96E14 147 aa9.4□□□□□ -0.9
CLK3-206ENST00000562078 OVOL2Q9BRP0 275 aa9.4□□□□□ -0.9
CLK3-206ENST00000562078 IGHV3OR16-12A0A075B7B8 117 aa9.4□□□□□ -0.91
CLK3-206ENST00000562078 C6orf226Q5I0X4 101 aa9.4□□□□□ -0.91
CLK3-206ENST00000562078 Q6ZSN1 163 aa9.4□□□□□ -0.91
CLK3-206ENST00000562078 HTN1P15515 57 aa9.39□□□□□ -0.91
CLK3-206ENST00000562078 JMJD1CQ15652 2540 aa9.39□□□□□ -0.91
CLK3-206ENST00000562078 PF4P02776 101 aa9.38□□□□□ -0.91
CLK3-206ENST00000562078 PRM2P04554 102 aa9.38□□□□□ -0.91
CLK3-206ENST00000562078 DEFB114Q30KQ6 69 aa9.38□□□□□ -0.91
CLK3-206ENST00000562078 MAP6D1Q9H9H5 199 aa9.38□□□□□ -0.91
CLK3-206ENST00000562078 F8WEM9 126 aa9.38□□□□□ -0.91
CLK3-206ENST00000562078 RPL36AP83881 106 aaKnown RBP9.38□□□□□ -0.91
CLK3-206ENST00000562078 RPL36ALQ969Q0 106 aaKnown RBP9.38□□□□□ -0.91
CLK3-206ENST00000562078 TRBV7-6A0A0J9YX20 115 aa9.37□□□□□ -0.91
CLK3-206ENST00000562078 CYSRT1A8MQ03 144 aa9.37□□□□□ -0.91
CLK3-206ENST00000562078 DGAT2L7PQ6IED9 249 aa9.37□□□□□ -0.91
CLK3-206ENST00000562078 LINC00482Q8N8I6 264 aa9.37□□□□□ -0.91
CLK3-206ENST00000562078 SND1-IT1Q9HBX3 110 aa9.37□□□□□ -0.91
CLK3-206ENST00000562078 RBM3P98179 157 aaKnown RBP9.37□□□□□ -0.91
CLK3-206ENST00000562078 ATP5EP2Q5VTU8 51 aa9.37□□□□□ -0.91
CLK3-206ENST00000562078 S100A7L2Q5SY68 101 aa9.36□□□□□ -0.91
CLK3-206ENST00000562078 C11orf72Q8NBR9 251 aa9.36□□□□□ -0.91
CLK3-206ENST00000562078 A8MTW9 85 aa9.36□□□□□ -0.91
CLK3-206ENST00000562078 CCL24O00175 119 aa9.36□□□□□ -0.91
CLK3-206ENST00000562078 KLKP1Q107X0 134 aa9.36□□□□□ -0.91
CLK3-206ENST00000562078 NOTCH3Q9UM47 2321 aa9.35□□□□□ -0.91
CLK3-206ENST00000562078 TRAV7A0A075B6U4 112 aa9.35□□□□□ -0.91
CLK3-206ENST00000562078 H0YGX0 51 aa9.35□□□□□ -0.91
CLK3-206ENST00000562078 ORMDL1Q9P0S3 153 aa9.35□□□□□ -0.91
CLK3-206ENST00000562078 C2CD3Q4AC94 2353 aa9.34□□□□□ -0.91
CLK3-206ENST00000562078 TRAV10A0A0B4J240 114 aa9.33□□□□□ -0.92
CLK3-206ENST00000562078 IL17DQ8TAD2 202 aa9.33□□□□□ -0.92
CLK3-206ENST00000562078 ODF3L2Q3SX64 289 aa9.32□□□□□ -0.92
CLK3-206ENST00000562078 Q6ZTI0 123 aa9.32□□□□□ -0.92
CLK3-206ENST00000562078 MPLKIPQ8TAP9 179 aa9.32□□□□□ -0.92
CLK3-206ENST00000562078 FAM229BQ4G0N7 80 aa9.31□□□□□ -0.92
CLK3-206ENST00000562078 UBL5Q9BZL1 73 aa9.31□□□□□ -0.92
CLK3-206ENST00000562078 TEP1Q99973 2627 aaKnown RBP9.31□□□□□ -0.92
CLK3-206ENST00000562078 TRBV10-3A0A0K0K1G6 114 aa9.3□□□□□ -0.92
CLK3-206ENST00000562078 INSP01308 110 aa9.29□□□□□ -0.92
CLK3-206ENST00000562078 CCL18P55774 89 aa9.29□□□□□ -0.92
CLK3-206ENST00000562078 KRTAP10-3P60369 221 aa9.29□□□□□ -0.92
CLK3-206ENST00000562078 LINC00158P58513 81 aa9.29□□□□□ -0.92
CLK3-206ENST00000562078 STHQ8IWL8 128 aa9.28□□□□□ -0.92
CLK3-206ENST00000562078 ZNF561-AS1K7EIQ3 104 aa9.27□□□□□ -0.93
CLK3-206ENST00000562078 JMJD7-PLA2G4BH0Y9G9 81 aa9.27□□□□□ -0.93
CLK3-206ENST00000562078 TOMM7Q9P0U1 55 aa9.27□□□□□ -0.93
CLK3-206ENST00000562078 PAX4O43316 350 aa9.26□□□□□ -0.93
CLK3-206ENST00000562078 TENM1Q9UKZ4 2725 aa9.26□□□□□ -0.93
CLK3-206ENST00000562078 FAM19A3Q7Z5A8 133 aa9.25□□□□□ -0.93
CLK3-206ENST00000562078 TM2D3Q9BRN9 247 aa9.25□□□□□ -0.93
CLK3-206ENST00000562078 MAST4O15021 2626 aa9.25□□□□□ -0.93
CLK3-206ENST00000562078 BCE1O60756 84 aa9.24□□□□□ -0.93
CLK3-206ENST00000562078 LINC01547P58512 204 aaPredicted RBP9.24□□□□□ -0.93
CLK3-206ENST00000562078 WFDC10AQ9H1F0 79 aa9.24□□□□□ -0.93
CLK3-206ENST00000562078 ATRQ13535 2644 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms