RNA–Protein interactions for RNA: ENST00000561442.5

USP3-221, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 542 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-221ENST00000561442 HAMPP81172 84 aa9.3□□□□□ -0.92
USP3-221ENST00000561442 COX6A2Q02221 97 aa9.3□□□□□ -0.92
USP3-221ENST00000561442 ANKRD39Q53RE8 183 aa9.3□□□□□ -0.92
USP3-221ENST00000561442 HIGD1BQ9P298 99 aa9.3□□□□□ -0.92
USP3-221ENST00000561442 IGHV3OR16-9A0A0B4J2B5 98 aa9.29□□□□□ -0.92
USP3-221ENST00000561442 CNBPP62633 177 aaKnown RBP9.29□□□□□ -0.92
USP3-221ENST00000561442 STPG4Q8N801 248 aa9.29□□□□□ -0.92
USP3-221ENST00000561442 ORAOV1Q8WV07 137 aa9.29□□□□□ -0.92
USP3-221ENST00000561442 FAM30AQ9NZY2 134 aa9.29□□□□□ -0.92
USP3-221ENST00000561442 CDK2AP2O75956 126 aa9.28□□□□□ -0.92
USP3-221ENST00000561442 HINT1P49773 126 aaPredicted RBP9.28□□□□□ -0.92
USP3-221ENST00000561442 HSD52Q0P140 79 aa9.28□□□□□ -0.92
USP3-221ENST00000561442 BVES-AS1Q5T3Y7 98 aa9.28□□□□□ -0.92
USP3-221ENST00000561442 ZNF561-AS1K7EIQ3 104 aa9.27□□□□□ -0.93
USP3-221ENST00000561442 APOMO95445 188 aa9.27□□□□□ -0.93
USP3-221ENST00000561442 C2orf91Q6ZV80 131 aa9.27□□□□□ -0.93
USP3-221ENST00000561442 C9orf163Q8N9P6 203 aa9.27□□□□□ -0.93
USP3-221ENST00000561442 CST9LQ9H4G1 147 aa9.27□□□□□ -0.93
USP3-221ENST00000561442 CHTOPQ9Y3Y2 248 aaKnown RBP9.27□□□□□ -0.93
USP3-221ENST00000561442 FAT1Q14517 4588 aa9.27□□□□□ -0.93
USP3-221ENST00000561442 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.26□□□□□ -0.93
USP3-221ENST00000561442 A0A0J9YXV3 536 aa9.26□□□□□ -0.93
USP3-221ENST00000561442 SPAG11BQ08648 103 aa9.26□□□□□ -0.93
USP3-221ENST00000561442 PMVKQ15126 192 aa9.26□□□□□ -0.93
USP3-221ENST00000561442 MRPL35Q9NZE8 188 aaKnown RBP9.26□□□□□ -0.93
USP3-221ENST00000561442 IGLV4-69A0A075B6H9 119 aa9.25□□□□□ -0.93
USP3-221ENST00000561442 IGHV3-64A0A075B6Q5 118 aa9.25□□□□□ -0.93
USP3-221ENST00000561442 A0A087WZ39 114 aa9.25□□□□□ -0.93
USP3-221ENST00000561442 A6NDN8 102 aa9.25□□□□□ -0.93
USP3-221ENST00000561442 XGP55808 180 aa9.25□□□□□ -0.93
USP3-221ENST00000561442 TAL2Q16559 108 aa9.25□□□□□ -0.93
USP3-221ENST00000561442 GEMIN7Q9H840 131 aaKnown RBP9.25□□□□□ -0.93
USP3-221ENST00000561442 NMUP48645 174 aa9.24□□□□□ -0.93
USP3-221ENST00000561442 CARD19Q96LW7 228 aa9.24□□□□□ -0.93
USP3-221ENST00000561442 HERVK_113P61574 105 aa9.23□□□□□ -0.93
USP3-221ENST00000561442 HERVK_113P63121 156 aa9.23□□□□□ -0.93
USP3-221ENST00000561442 SYCNQ0VAF6 134 aa9.23□□□□□ -0.93
USP3-221ENST00000561442 FAM19A3Q7Z5A8 133 aa9.23□□□□□ -0.93
USP3-221ENST00000561442 CDKN2A-AS1Q9UH64 79 aa9.23□□□□□ -0.93
USP3-221ENST00000561442 TINCRA0A1B0GVN0 87 aa9.22□□□□□ -0.93
USP3-221ENST00000561442 SDIM1Q6ZPB5 146 aa9.22□□□□□ -0.93
USP3-221ENST00000561442 Q6ZSA8 131 aa9.22□□□□□ -0.93
USP3-221ENST00000561442 CAMK2N2Q96S95 79 aa9.22□□□□□ -0.93
USP3-221ENST00000561442 E9PLD3 99 aa9.21□□□□□ -0.94
USP3-221ENST00000561442 Q6ZRU5 148 aa9.21□□□□□ -0.94
USP3-221ENST00000561442 PANO1I0J062 215 aa9.2□□□□□ -0.94
USP3-221ENST00000561442 LINC01561Q8N1V8 128 aa9.2□□□□□ -0.94
USP3-221ENST00000561442 C2orf48Q96LS8 159 aa9.2□□□□□ -0.94
USP3-221ENST00000561442 KRTAP17-1Q9BYP8 105 aa9.2□□□□□ -0.94
USP3-221ENST00000561442 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.2□□□□□ -0.94
USP3-221ENST00000561442 C11orf86A6NJI1 115 aa9.19□□□□□ -0.94
USP3-221ENST00000561442 H3BRM9 83 aa9.19□□□□□ -0.94
USP3-221ENST00000561442 SMR3BP02814 79 aaPredicted RBP9.19□□□□□ -0.94
USP3-221ENST00000561442 CHTF8P0CG12 524 aa9.19□□□□□ -0.94
USP3-221ENST00000561442 KIAA0087Q14695 138 aa9.19□□□□□ -0.94
USP3-221ENST00000561442 SCXQ7RTU7 201 aa9.19□□□□□ -0.94
USP3-221ENST00000561442 PCP2Q8IVA1 136 aa9.19□□□□□ -0.94
USP3-221ENST00000561442 CHAC1Q9BUX1 264 aa9.19□□□□□ -0.94
USP3-221ENST00000561442 TOMM7Q9P0U1 55 aa9.19□□□□□ -0.94
USP3-221ENST00000561442 VPS13BQ7Z7G8 4022 aa9.18□□□□□ -0.94
USP3-221ENST00000561442 IGKV2D-26A0A0A0MRZ7 120 aa9.18□□□□□ -0.94
USP3-221ENST00000561442 TAX1BP3O14907 124 aa9.18□□□□□ -0.94
USP3-221ENST00000561442 C10orf25Q5T742 122 aa9.18□□□□□ -0.94
USP3-221ENST00000561442 IGLV5-45A0A087WSX0 123 aa9.17□□□□□ -0.94
USP3-221ENST00000561442 IGKV2-24A0A0C4DH68 120 aa9.17□□□□□ -0.94
USP3-221ENST00000561442 NDUFA1O15239 70 aa9.17□□□□□ -0.94
USP3-221ENST00000561442 PRSS2P07478 247 aa9.17□□□□□ -0.94
USP3-221ENST00000561442 SPINK8P0C7L1 97 aa9.17□□□□□ -0.94
USP3-221ENST00000561442 C2orf82Q6UX34 121 aa9.17□□□□□ -0.94
USP3-221ENST00000561442 UNQ6190/PRO20217Q6UXQ8 127 aa9.17□□□□□ -0.94
USP3-221ENST00000561442 MYMXA0A1B0GTQ4 84 aa9.16□□□□□ -0.94
USP3-221ENST00000561442 SMIM1B2RUZ4 78 aa9.16□□□□□ -0.94
USP3-221ENST00000561442 UBE2V1Q13404 147 aa9.16□□□□□ -0.94
USP3-221ENST00000561442 CIRBP-AS1Q8TBR5 109 aa9.16□□□□□ -0.94
USP3-221ENST00000561442 DPH3Q96FX2 82 aa9.16□□□□□ -0.94
USP3-221ENST00000561442 A0A096LNI7 61 aa9.15□□□□□ -0.94
USP3-221ENST00000561442 ZNF22P17026 224 aaPredicted RBP9.15□□□□□ -0.94
USP3-221ENST00000561442 C6orf226Q5I0X4 101 aa9.15□□□□□ -0.94
USP3-221ENST00000561442 TP73-AS1Q9UF72 201 aa9.15□□□□□ -0.94
USP3-221ENST00000561442 F8WDY8 70 aa9.14□□□□□ -0.95
USP3-221ENST00000561442 GAGE2BQ13066 116 aa9.14□□□□□ -0.95
USP3-221ENST00000561442 Q8IZM0 81 aa9.14□□□□□ -0.95
USP3-221ENST00000561442 CEND1Q8N111 149 aa9.14□□□□□ -0.95
USP3-221ENST00000561442 Q8N1X5 172 aa9.14□□□□□ -0.95
USP3-221ENST00000561442 SPACA4Q8TDM5 124 aa9.14□□□□□ -0.95
USP3-221ENST00000561442 C6orf48Q9UBA6 75 aa9.14□□□□□ -0.95
USP3-221ENST00000561442 LOC107984640A0A0U1RRK4 108 aa9.13□□□□□ -0.95
USP3-221ENST00000561442 C9orf118A6NHY6 69 aa9.13□□□□□ -0.95
USP3-221ENST00000561442 CKS1BP61024 79 aa9.13□□□□□ -0.95
USP3-221ENST00000561442 RPL18AQ02543 176 aaKnown RBP9.13□□□□□ -0.95
USP3-221ENST00000561442 TMEM170BQ5T4T1 132 aa9.13□□□□□ -0.95
USP3-221ENST00000561442 TMEM238LA0A1B0GVL6 79 aa9.12□□□□□ -0.95
USP3-221ENST00000561442 A6NJY4 79 aa9.12□□□□□ -0.95
USP3-221ENST00000561442 SMIM13P0DJ93 91 aa9.12□□□□□ -0.95
USP3-221ENST00000561442 PTTG1IPP53801 180 aa9.12□□□□□ -0.95
USP3-221ENST00000561442 CIRBPQ14011 172 aaKnown RBP9.12□□□□□ -0.95
USP3-221ENST00000561442 VAMP3Q15836 100 aa9.12□□□□□ -0.95
USP3-221ENST00000561442 RNF151Q2KHN1 245 aa9.12□□□□□ -0.95
USP3-221ENST00000561442 COX7B2Q8TF08 81 aa9.12□□□□□ -0.95
USP3-221ENST00000561442 KRTAP4-5Q9BYR2 181 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms