RNA–Protein interactions for RNA: ENST00000561330.1

USP8-218, Transcript of ubiquitin specific peptidase 8, humanhuman

TSL 1 (best)

Gene USP8, Length 815 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP8-218ENST00000561330 H0YGG7 62 aa-0.88□□□□□ -2.55
USP8-218ENST00000561330 I3L3M4 83 aa-0.88□□□□□ -2.55
USP8-218ENST00000561330 Q56UQ5 140 aa-0.88□□□□□ -2.55
USP8-218ENST00000561330 COMMD6Q7Z4G1 85 aa-0.88□□□□□ -2.55
USP8-218ENST00000561330 SNRNP25Q9BV90 132 aaKnown RBP-0.88□□□□□ -2.55
USP8-218ENST00000561330 C1orf167Q5SNV9 1468 aa-0.88□□□□□ -2.55
USP8-218ENST00000561330 ACACAQ13085 2346 aa-0.88□□□□□ -2.55
USP8-218ENST00000561330 PDE4DIPQ5VU43 2346 aa-0.88□□□□□ -2.55
USP8-218ENST00000561330 PKHD1L1Q86WI1 4243 aa-0.88□□□□□ -2.55
USP8-218ENST00000561330 DNAH9Q9NYC9 4486 aa-0.89□□□□□ -2.55
USP8-218ENST00000561330 FASNP49327 2511 aaKnown RBP-0.89□□□□□ -2.55
USP8-218ENST00000561330 LOC100130705A0A1B0GUX0 176 aa-0.89□□□□□ -2.55
USP8-218ENST00000561330 A0A1B0GWA3 101 aa-0.89□□□□□ -2.55
USP8-218ENST00000561330 APOC2P02655 101 aa-0.89□□□□□ -2.55
USP8-218ENST00000561330 TRAPPC2P0DI81 140 aa-0.89□□□□□ -2.55
USP8-218ENST00000561330 TRAPPC2BP0DI82 140 aa-0.89□□□□□ -2.55
USP8-218ENST00000561330 UBE2D3P61077 147 aa-0.89□□□□□ -2.55
USP8-218ENST00000561330 UBE2D2P62837 147 aa-0.89□□□□□ -2.55
USP8-218ENST00000561330 C5orf38Q86SI9 138 aa-0.89□□□□□ -2.55
USP8-218ENST00000561330 ARL11Q969Q4 196 aa-0.89□□□□□ -2.55
USP8-218ENST00000561330 CCDC141Q6ZP82 1450 aa-0.89□□□□□ -2.55
USP8-218ENST00000561330 ROBO1Q9Y6N7 1651 aa-0.89□□□□□ -2.55
USP8-218ENST00000561330 ITPR3Q14573 2671 aa-0.89□□□□□ -2.55
USP8-218ENST00000561330 PRRC2CQ9Y520 2896 aaKnown RBP-0.89□□□□□ -2.55
USP8-218ENST00000561330 REV3LO60673 3130 aa-0.9□□□□□ -2.55
USP8-218ENST00000561330 GNG7O60262 68 aa-0.9□□□□□ -2.55
USP8-218ENST00000561330 GNG11P61952 73 aa-0.9□□□□□ -2.55
USP8-218ENST00000561330 C9orf153Q5TBE3 101 aa-0.9□□□□□ -2.55
USP8-218ENST00000561330 HEPN1Q6WQI6 88 aa-0.9□□□□□ -2.55
USP8-218ENST00000561330 MANBALQ9NQG1 85 aa-0.9□□□□□ -2.55
USP8-218ENST00000561330 CDC42SE2Q9NRR3 84 aa-0.9□□□□□ -2.55
USP8-218ENST00000561330 NLRP1Q9C000 1473 aa-0.91□□□□□ -2.55
USP8-218ENST00000561330 A0A1B0GU69 56 aa-0.91□□□□□ -2.56
USP8-218ENST00000561330 RNF213Q63HN8 5207 aa-0.91□□□□□ -2.56
USP8-218ENST00000561330 SMG6Q86US8 1419 aaKnown RBP-0.91□□□□□ -2.56
USP8-218ENST00000561330 CUBNO60494 3623 aa-0.91□□□□□ -2.56
USP8-218ENST00000561330 MYO18BQ8IUG5 2567 aa-0.92□□□□□ -2.56
USP8-218ENST00000561330 ZZEF1O43149 2961 aa-0.92□□□□□ -2.56
USP8-218ENST00000561330 SHROOM2Q13796 1616 aa-0.92□□□□□ -2.56
USP8-218ENST00000561330 SLIT1O75093 1534 aa-0.92□□□□□ -2.56
USP8-218ENST00000561330 EHBP1L1Q8N3D4 1523 aa-0.92□□□□□ -2.56
USP8-218ENST00000561330 TRAV30A0A087WSZ9 112 aa-0.92□□□□□ -2.56
USP8-218ENST00000561330 FAM223BA6NKX1 122 aa-0.92□□□□□ -2.56
USP8-218ENST00000561330 F6UZH7 168 aa-0.92□□□□□ -2.56
USP8-218ENST00000561330 SNCAP37840 140 aa-0.92□□□□□ -2.56
USP8-218ENST00000561330 SELENOWP63302 87 aa-0.92□□□□□ -2.56
USP8-218ENST00000561330 SPRR2FQ96RM1 72 aa-0.92□□□□□ -2.56
USP8-218ENST00000561330 LINC00470Q9BZP3 86 aa-0.92□□□□□ -2.56
USP8-218ENST00000561330 PAIP2BQ9ULR5 123 aaKnown RBP-0.92□□□□□ -2.56
USP8-218ENST00000561330 COL4A6Q14031 1691 aa-0.92□□□□□ -2.56
USP8-218ENST00000561330 NAIPQ13075 1403 aa-0.92□□□□□ -2.56
USP8-218ENST00000561330 LAMA2P24043 3122 aaKnown RBP-0.92□□□□□ -2.56
USP8-218ENST00000561330 NKTRP30414 1462 aaKnown RBP-0.92□□□□□ -2.56
USP8-218ENST00000561330 PLEKHH2Q8IVE3 1493 aa-0.92□□□□□ -2.56
USP8-218ENST00000561330 RYR2Q92736 4967 aa-0.93□□□□□ -2.56
USP8-218ENST00000561330 TNRC18O15417 2968 aaPredicted RBP-0.93□□□□□ -2.56
USP8-218ENST00000561330 QRICH2Q9H0J4 1663 aa-0.93□□□□□ -2.56
USP8-218ENST00000561330 COX6CP09669 75 aa-0.93□□□□□ -2.56
USP8-218ENST00000561330 BTG2P78543 158 aa-0.93□□□□□ -2.56
USP8-218ENST00000561330 ZNF436-AS1Q8NC38 126 aaPredicted RBP-0.93□□□□□ -2.56
USP8-218ENST00000561330 C12orf57Q99622 126 aa-0.93□□□□□ -2.56
USP8-218ENST00000561330 TOP2BQ02880 1626 aa-0.93□□□□□ -2.56
USP8-218ENST00000561330 KIF20BQ96Q89 1820 aa-0.94□□□□□ -2.56
USP8-218ENST00000561330 LAMA1P25391 3075 aa-0.94□□□□□ -2.56
USP8-218ENST00000561330 HECTD1Q9ULT8 2610 aa-0.94□□□□□ -2.56
USP8-218ENST00000561330 UBE2L5PA0A1B0GUS4 154 aa-0.94□□□□□ -2.56
USP8-218ENST00000561330 OOSP1A8MZH6 123 aa-0.94□□□□□ -2.56
USP8-218ENST00000561330 UBE2L3P68036 154 aaKnown RBP-0.94□□□□□ -2.56
USP8-218ENST00000561330 Q0VG73 95 aa-0.94□□□□□ -2.56
USP8-218ENST00000561330 RGPD2P0DJD1 1756 aa-0.94□□□□□ -2.56
USP8-218ENST00000561330 ADGRL2O95490 1459 aa-0.94□□□□□ -2.56
USP8-218ENST00000561330 TEP1Q99973 2627 aaKnown RBP-0.94□□□□□ -2.56
USP8-218ENST00000561330 KTN1Q86UP2 1357 aaKnown RBP-0.95□□□□□ -2.56
USP8-218ENST00000561330 A0A087WVE0 104 aa-0.95□□□□□ -2.56
USP8-218ENST00000561330 H3BNG1 76 aa-0.95□□□□□ -2.56
USP8-218ENST00000561330 AKAIN1P0CW23 69 aa-0.95□□□□□ -2.56
USP8-218ENST00000561330 SAA2P0DJI9 122 aaPredicted RBP-0.95□□□□□ -2.56
USP8-218ENST00000561330 VPS13BQ7Z7G8 4022 aa-0.96□□□□□ -2.56
USP8-218ENST00000561330 TRANK1O15050 2925 aa-0.96□□□□□ -2.56
USP8-218ENST00000561330 DNAH2Q9P225 4427 aa-0.96□□□□□ -2.56
USP8-218ENST00000561330 FAM24AA6NFZ4 105 aa-0.96□□□□□ -2.56
USP8-218ENST00000561330 FGF7P21781 194 aa-0.96□□□□□ -2.56
USP8-218ENST00000561330 C6orf201Q7Z4U5 140 aa-0.96□□□□□ -2.56
USP8-218ENST00000561330 MRPL34Q9BQ48 92 aaKnown RBP-0.96□□□□□ -2.56
USP8-218ENST00000561330 CDKN2A-AS1Q9UH64 79 aa-0.96□□□□□ -2.56
USP8-218ENST00000561330 PRO1854Q9UHT4 67 aa-0.96□□□□□ -2.56
USP8-218ENST00000561330 KNDC1Q76NI1 1749 aa-0.96□□□□□ -2.56
USP8-218ENST00000561330 DMXL1Q9Y485 3027 aa-0.96□□□□□ -2.56
USP8-218ENST00000561330 AKAP13Q12802 2813 aa-0.96□□□□□ -2.56
USP8-218ENST00000561330 LAMA3Q16787 3333 aa-0.96□□□□□ -2.56
USP8-218ENST00000561330 BCORQ6W2J9 1755 aa-0.96□□□□□ -2.56
USP8-218ENST00000561330 ADAMTS12P58397 1594 aa-0.96□□□□□ -2.56
USP8-218ENST00000561330 PTPN23Q9H3S7 1636 aa-0.97□□□□□ -2.56
USP8-218ENST00000561330 MBD5Q9P267 1494 aa-0.97□□□□□ -2.56
USP8-218ENST00000561330 LOC105371267A0A1B0GV96 52 aa-0.97□□□□□ -2.56
USP8-218ENST00000561330 CCL22O00626 93 aa-0.97□□□□□ -2.56
USP8-218ENST00000561330 SNAPC5O75971 98 aa-0.97□□□□□ -2.56
USP8-218ENST00000561330 ATP5EP56381 51 aaPredicted RBP-0.97□□□□□ -2.56
USP8-218ENST00000561330 GNGT1P63211 74 aa-0.97□□□□□ -2.56
USP8-218ENST00000561330 CCDC58Q4VC31 144 aa-0.97□□□□□ -2.56
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms