RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 C20orf197Q8N268 126 aa8.01□□□□□ -1.13
LDLR-208ENST00000558518 ORMDL1Q9P0S3 153 aa8.01□□□□□ -1.13
LDLR-208ENST00000558518 LAMTOR3Q9UHA4 124 aa8.01□□□□□ -1.13
LDLR-208ENST00000558518 BEAN1Q3B7T3 259 aa8□□□□□ -1.13
LDLR-208ENST00000558518 GHRHP01286 108 aa8□□□□□ -1.13
LDLR-208ENST00000558518 HTN3P15516 51 aa7.99□□□□□ -1.13
LDLR-208ENST00000558518 RPL28P46779 137 aaKnown RBP7.99□□□□□ -1.13
LDLR-208ENST00000558518 TMEM86BQ8N661 226 aa7.99□□□□□ -1.13
LDLR-208ENST00000558518 SCXQ7RTU7 201 aa7.99□□□□□ -1.13
LDLR-208ENST00000558518 S100A7L2Q5SY68 101 aa7.98□□□□□ -1.13
LDLR-208ENST00000558518 HRCT1Q6UXD1 115 aa7.98□□□□□ -1.13
LDLR-208ENST00000558518 USP24Q9UPU5 2620 aa7.97□□□□□ -1.13
LDLR-208ENST00000558518 UNC79Q9P2D8 2635 aa7.97□□□□□ -1.13
LDLR-208ENST00000558518 SMIM9A6NGZ8 99 aa7.97□□□□□ -1.13
LDLR-208ENST00000558518 CCL24O00175 119 aa7.97□□□□□ -1.13
LDLR-208ENST00000558518 C4orf26Q17RF5 130 aa7.97□□□□□ -1.13
LDLR-208ENST00000558518 H0YGX0 51 aa7.96□□□□□ -1.13
LDLR-208ENST00000558518 KRTAP10-9P60411 292 aa7.96□□□□□ -1.13
LDLR-208ENST00000558518 LINC01561Q8N1V8 128 aa7.96□□□□□ -1.13
LDLR-208ENST00000558518 LINC00269Q8N2A0 174 aa7.96□□□□□ -1.13
LDLR-208ENST00000558518 Q8N3U1 123 aa7.96□□□□□ -1.13
LDLR-208ENST00000558518 GYPEP15421 78 aa7.96□□□□□ -1.14
LDLR-208ENST00000558518 Q6YL49 198 aa7.96□□□□□ -1.14
LDLR-208ENST00000558518 SERP2Q8N6R1 65 aa7.96□□□□□ -1.14
LDLR-208ENST00000558518 TRBV10-1A0A0K0K1A3 114 aa7.95□□□□□ -1.14
LDLR-208ENST00000558518 C6orf99Q4VX62 202 aa7.95□□□□□ -1.14
LDLR-208ENST00000558518 C2orf48Q96LS8 159 aa7.95□□□□□ -1.14
LDLR-208ENST00000558518 SNURFQ9Y675 71 aa7.95□□□□□ -1.14
LDLR-208ENST00000558518 LINC01600Q96MT4 127 aa7.95□□□□□ -1.14
LDLR-208ENST00000558518 AKAP9Q99996 3911 aa7.94□□□□□ -1.14
LDLR-208ENST00000558518 TRBV6-8A0A0A6YYG3 113 aa7.94□□□□□ -1.14
LDLR-208ENST00000558518 ANGP03950 147 aaKnown RBP7.94□□□□□ -1.14
LDLR-208ENST00000558518 FAM222AQ5U5X8 452 aa7.94□□□□□ -1.14
LDLR-208ENST00000558518 CR1P17927 2039 aa7.94□□□□□ -1.14
LDLR-208ENST00000558518 OVOL2Q9BRP0 275 aa7.94□□□□□ -1.14
LDLR-208ENST00000558518 PF4P02776 101 aa7.93□□□□□ -1.14
LDLR-208ENST00000558518 SS18Q15532 418 aa7.93□□□□□ -1.14
LDLR-208ENST00000558518 C4orf3Q8WVX3 66 aa7.93□□□□□ -1.14
LDLR-208ENST00000558518 UBL5Q9BZL1 73 aa7.93□□□□□ -1.14
LDLR-208ENST00000558518 LINC00959A0A1B0GUT2 108 aa7.93□□□□□ -1.14
LDLR-208ENST00000558518 IGHV3OR16-9A0A0B4J2B5 98 aa7.92□□□□□ -1.14
LDLR-208ENST00000558518 UPK3BQ9BT76 320 aa7.92□□□□□ -1.14
LDLR-208ENST00000558518 FHL2Q14192 279 aa7.92□□□□□ -1.14
LDLR-208ENST00000558518 IBA57-AS1B1ANH7 110 aa7.91□□□□□ -1.14
LDLR-208ENST00000558518 DPH3Q96FX2 82 aa7.91□□□□□ -1.14
LDLR-208ENST00000558518 IGHV4-31P0DP07 118 aa7.91□□□□□ -1.14
LDLR-208ENST00000558518 CRYGAP11844 174 aa7.91□□□□□ -1.14
LDLR-208ENST00000558518 C5orf47Q569G3 176 aa7.91□□□□□ -1.14
LDLR-208ENST00000558518 Q6JHZ5 121 aa7.91□□□□□ -1.14
LDLR-208ENST00000558518 PRORYQ9H606 182 aa7.91□□□□□ -1.14
LDLR-208ENST00000558518 TRBV6-4A0A1B0GX49 114 aa7.91□□□□□ -1.14
LDLR-208ENST00000558518 ATRQ13535 2644 aa7.91□□□□□ -1.14
LDLR-208ENST00000558518 UBR5O95071 2799 aaPredicted RBP7.89□□□□□ -1.15
LDLR-208ENST00000558518 XAGE1AQ9HD64 81 aa7.89□□□□□ -1.15
LDLR-208ENST00000558518 CCKP06307 115 aa7.89□□□□□ -1.15
LDLR-208ENST00000558518 C6orf223Q8N319 242 aa7.89□□□□□ -1.15
LDLR-208ENST00000558518 BBC3Q96PG8 261 aaPredicted RBP7.89□□□□□ -1.15
LDLR-208ENST00000558518 C16orf74Q96GX8 76 aa7.89□□□□□ -1.15
LDLR-208ENST00000558518 A0A087WZ39 114 aa7.88□□□□□ -1.15
LDLR-208ENST00000558518 M0R2N4 97 aa7.88□□□□□ -1.15
LDLR-208ENST00000558518 OXTP01178 125 aa7.88□□□□□ -1.15
LDLR-208ENST00000558518 Q8N814 137 aa7.88□□□□□ -1.15
LDLR-208ENST00000558518 FASNP49327 2511 aaKnown RBP7.88□□□□□ -1.15
LDLR-208ENST00000558518 ITPR2Q14571 2701 aa7.87□□□□□ -1.15
LDLR-208ENST00000558518 TEP1Q99973 2627 aaKnown RBP7.87□□□□□ -1.15
LDLR-208ENST00000558518 DSCR9P59020 149 aa7.87□□□□□ -1.15
LDLR-208ENST00000558518 TMEM258P61165 79 aa7.87□□□□□ -1.15
LDLR-208ENST00000558518 J3QLI3 93 aa7.86□□□□□ -1.15
LDLR-208ENST00000558518 RBM3P98179 157 aaKnown RBP7.86□□□□□ -1.15
LDLR-208ENST00000558518 LINC00482Q8N8I6 264 aa7.86□□□□□ -1.15
LDLR-208ENST00000558518 SPATA3Q8NHX4 192 aa7.86□□□□□ -1.15
LDLR-208ENST00000558518 TMEM256-PLSCR3K7ERE1 68 aa7.86□□□□□ -1.15
LDLR-208ENST00000558518 DAD1P61803 113 aa7.86□□□□□ -1.15
LDLR-208ENST00000558518 Q6ZQY7 126 aa7.86□□□□□ -1.15
LDLR-208ENST00000558518 NBPF19A0A087WUL8 3843 aa7.86□□□□□ -1.15
LDLR-208ENST00000558518 VWFP04275 2813 aa7.85□□□□□ -1.15
LDLR-208ENST00000558518 DNAJC9-AS1A6NH13 148 aa7.85□□□□□ -1.15
LDLR-208ENST00000558518 ZNF843Q8N446 348 aa7.85□□□□□ -1.15
LDLR-208ENST00000558518 UNQ6190/PRO20217Q6UXQ8 127 aa7.85□□□□□ -1.15
LDLR-208ENST00000558518 CHCHD10Q8WYQ3 142 aaPredicted RBP7.85□□□□□ -1.15
LDLR-208ENST00000558518 HECTD1Q9ULT8 2610 aa7.85□□□□□ -1.15
LDLR-208ENST00000558518 GIG44P09565 113 aaPredicted RBP7.85□□□□□ -1.15
LDLR-208ENST00000558518 ZNF469Q96JG9 3925 aaPredicted RBP7.85□□□□□ -1.15
LDLR-208ENST00000558518 JMJD7-PLA2G4BH0Y9G9 81 aa7.84□□□□□ -1.15
LDLR-208ENST00000558518 RMI2Q96E14 147 aa7.84□□□□□ -1.15
LDLR-208ENST00000558518 HIVEP1P15822 2718 aa7.84□□□□□ -1.15
LDLR-208ENST00000558518 Q8N9L7 120 aa7.84□□□□□ -1.15
LDLR-208ENST00000558518 LINC01006Q8NI28 216 aa7.83□□□□□ -1.16
LDLR-208ENST00000558518 TRAV10A0A0B4J240 114 aa7.83□□□□□ -1.16
LDLR-208ENST00000558518 TRAV25A0A0B4J276 109 aa7.83□□□□□ -1.16
LDLR-208ENST00000558518 PRB2P02812 416 aaPredicted RBP7.83□□□□□ -1.16
LDLR-208ENST00000558518 DEFB135Q30KP9 77 aa7.83□□□□□ -1.16
LDLR-208ENST00000558518 C10orf25Q5T742 122 aa7.83□□□□□ -1.16
LDLR-208ENST00000558518 PLAC8L1A1L4L8 177 aa7.83□□□□□ -1.16
LDLR-208ENST00000558518 KLK12Q9UKR0 248 aa7.82□□□□□ -1.16
LDLR-208ENST00000558518 A0A096LNT2 108 aa7.82□□□□□ -1.16
LDLR-208ENST00000558518 FAM236DA0A1B0GTK5 79 aa7.82□□□□□ -1.16
LDLR-208ENST00000558518 FAM236CP0DP71 79 aa7.82□□□□□ -1.16
LDLR-208ENST00000558518 REG3AQ06141 175 aa7.81□□□□□ -1.16
LDLR-208ENST00000558518 Q8NDZ9 215 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 153.6 ms