RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 DPH3Q96FX2 82 aa9.16□□□□□ -0.94
USP3-205ENST00000557884 A0A096LNI7 61 aa9.15□□□□□ -0.94
USP3-205ENST00000557884 C11orf86A6NJI1 115 aa9.15□□□□□ -0.94
USP3-205ENST00000557884 ZNF22P17026 224 aaPredicted RBP9.15□□□□□ -0.94
USP3-205ENST00000557884 C6orf226Q5I0X4 101 aa9.15□□□□□ -0.94
USP3-205ENST00000557884 TRAV12-1A0A0B4J245 112 aa9.14□□□□□ -0.95
USP3-205ENST00000557884 F8WDY8 70 aa9.14□□□□□ -0.95
USP3-205ENST00000557884 H3BRM9 83 aa9.14□□□□□ -0.95
USP3-205ENST00000557884 GAGE2BQ13066 116 aa9.14□□□□□ -0.95
USP3-205ENST00000557884 MAJINQ3KP22 176 aa9.14□□□□□ -0.95
USP3-205ENST00000557884 Q8IZM0 81 aa9.14□□□□□ -0.95
USP3-205ENST00000557884 Q8N1X5 172 aa9.14□□□□□ -0.95
USP3-205ENST00000557884 SPACA4Q8TDM5 124 aa9.14□□□□□ -0.95
USP3-205ENST00000557884 MRPL35Q9NZE8 188 aaKnown RBP9.14□□□□□ -0.95
USP3-205ENST00000557884 C6orf48Q9UBA6 75 aa9.14□□□□□ -0.95
USP3-205ENST00000557884 HSPB8Q9UJY1 196 aa9.14□□□□□ -0.95
USP3-205ENST00000557884 LOC107984640A0A0U1RRK4 108 aa9.13□□□□□ -0.95
USP3-205ENST00000557884 CKS1BP61024 79 aa9.13□□□□□ -0.95
USP3-205ENST00000557884 RPL18AQ02543 176 aaKnown RBP9.13□□□□□ -0.95
USP3-205ENST00000557884 TMEM170BQ5T4T1 132 aa9.13□□□□□ -0.95
USP3-205ENST00000557884 CIRBPQ14011 172 aaKnown RBP9.12□□□□□ -0.95
USP3-205ENST00000557884 RNF151Q2KHN1 245 aa9.12□□□□□ -0.95
USP3-205ENST00000557884 COX7B2Q8TF08 81 aa9.12□□□□□ -0.95
USP3-205ENST00000557884 KRTAP4-5Q9BYR2 181 aa9.12□□□□□ -0.95
USP3-205ENST00000557884 PKIGQ9Y2B9 76 aa9.12□□□□□ -0.95
USP3-205ENST00000557884 A0A087WYN8 130 aa9.11□□□□□ -0.95
USP3-205ENST00000557884 F8VRH5 84 aa9.11□□□□□ -0.95
USP3-205ENST00000557884 C9orf116Q5BN46 136 aaPredicted RBP9.11□□□□□ -0.95
USP3-205ENST00000557884 PTTG1IPP53801 180 aa9.1□□□□□ -0.95
USP3-205ENST00000557884 ODF1Q14990 250 aa9.1□□□□□ -0.95
USP3-205ENST00000557884 Q5VSD8 79 aa9.1□□□□□ -0.95
USP3-205ENST00000557884 LINC00528Q8N1L1 170 aa9.1□□□□□ -0.95
USP3-205ENST00000557884 IGLV5-39A0A0G2JS06 123 aa9.09□□□□□ -0.95
USP3-205ENST00000557884 TRBV30A0A0K0K1B3 111 aa9.09□□□□□ -0.95
USP3-205ENST00000557884 EPM2AB3EWF7 344 aa9.09□□□□□ -0.95
USP3-205ENST00000557884 COA6Q5JTJ3 125 aaKnown RBP9.09□□□□□ -0.95
USP3-205ENST00000557884 STPG4Q8N801 248 aa9.09□□□□□ -0.95
USP3-205ENST00000557884 SRRM2Q9UQ35 2752 aaKnown RBP9.08□□□□□ -0.96
USP3-205ENST00000557884 ABCA13Q86UQ4 5058 aa9.08□□□□□ -0.96
USP3-205ENST00000557884 GAGE2EQ4V326 116 aa9.08□□□□□ -0.96
USP3-205ENST00000557884 PMCHL2Q9BQD1 86 aa9.08□□□□□ -0.96
USP3-205ENST00000557884 MAP1LC3CQ9BXW4 147 aa9.08□□□□□ -0.96
USP3-205ENST00000557884 LINC00474Q9P2X8 69 aa9.08□□□□□ -0.96
USP3-205ENST00000557884 GAGE2DQ9UEU5 116 aa9.08□□□□□ -0.96
USP3-205ENST00000557884 FAM229AH3BQW9 127 aa9.07□□□□□ -0.96
USP3-205ENST00000557884 CXCL5P42830 114 aa9.07□□□□□ -0.96
USP3-205ENST00000557884 Q6ZRP5 223 aa9.07□□□□□ -0.96
USP3-205ENST00000557884 PLAC8Q9NZF1 115 aa9.07□□□□□ -0.96
USP3-205ENST00000557884 TMEM223A0PJW6 202 aa9.06□□□□□ -0.96
USP3-205ENST00000557884 TLX1NBP0CAT3 122 aa9.06□□□□□ -0.96
USP3-205ENST00000557884 NDUFC2-KCTD14E9PQ53 114 aa9.05□□□□□ -0.96
USP3-205ENST00000557884 A0A1W2PNN7 141 aa9.04□□□□□ -0.96
USP3-205ENST00000557884 DPM2O94777 84 aa9.04□□□□□ -0.96
USP3-205ENST00000557884 PLNP26678 52 aa9.04□□□□□ -0.96
USP3-205ENST00000557884 SYS1-DBNDD2H3BUS1 97 aa9.03□□□□□ -0.96
USP3-205ENST00000557884 FAM168BA1KXE4 195 aa9.02□□□□□ -0.97
USP3-205ENST00000557884 IGKCP01834 107 aa9.02□□□□□ -0.97
USP3-205ENST00000557884 LCE2AQ5TA79 106 aaPredicted RBP9.02□□□□□ -0.97
USP3-205ENST00000557884 PLA2G1BP04054 148 aaKnown RBP9.01□□□□□ -0.97
USP3-205ENST00000557884 C3orf79P0CE67 100 aa9.01□□□□□ -0.97
USP3-205ENST00000557884 KRTDAPP60985 99 aa9.01□□□□□ -0.97
USP3-205ENST00000557884 RPL37AP61513 92 aaKnown RBP9.01□□□□□ -0.97
USP3-205ENST00000557884 ZNF625Q96I27 306 aaPredicted RBP9.01□□□□□ -0.97
USP3-205ENST00000557884 XAGE1AQ9HD64 81 aa9.01□□□□□ -0.97
USP3-205ENST00000557884 C9orf129Q5T035 196 aaKnown RBP9□□□□□ -0.97
USP3-205ENST00000557884 FAM19A5Q7Z5A7 132 aaPredicted RBP9□□□□□ -0.97
USP3-205ENST00000557884 C7orf33Q8WU49 177 aa9□□□□□ -0.97
USP3-205ENST00000557884 PFN2P35080 140 aa8.99□□□□□ -0.97
USP3-205ENST00000557884 PET117Q6UWS5 81 aa8.99□□□□□ -0.97
USP3-205ENST00000557884 S100A6P06703 90 aa8.98□□□□□ -0.97
USP3-205ENST00000557884 TSPEAR-AS2P59090 65 aa8.98□□□□□ -0.97
USP3-205ENST00000557884 HERVK_113P61574 105 aa8.98□□□□□ -0.97
USP3-205ENST00000557884 LINC01545Q5VT33 79 aa8.98□□□□□ -0.97
USP3-205ENST00000557884 PHF5AQ7RTV0 110 aaKnown RBP8.98□□□□□ -0.97
USP3-205ENST00000557884 HIST3H2BBQ8N257 126 aa8.98□□□□□ -0.97
USP3-205ENST00000557884 PKHD1L1Q86WI1 4243 aa8.98□□□□□ -0.97
USP3-205ENST00000557884 PCLOQ9Y6V0 5065 aa8.98□□□□□ -0.97
USP3-205ENST00000557884 LEPROTO15243 131 aa8.97□□□□□ -0.97
USP3-205ENST00000557884 KRTAP10-4P60372 401 aaPredicted RBP8.97□□□□□ -0.97
USP3-205ENST00000557884 ERG28Q9UKR5 140 aa8.97□□□□□ -0.97
USP3-205ENST00000557884 MYCBP2O75592 4640 aa8.96□□□□□ -0.97
USP3-205ENST00000557884 INAFM2P0DMQ5 153 aa8.96□□□□□ -0.98
USP3-205ENST00000557884 S100A2P29034 98 aa8.96□□□□□ -0.98
USP3-205ENST00000557884 SFTA2Q6UW10 78 aa8.96□□□□□ -0.98
USP3-205ENST00000557884 KRTAP7-1Q8IUC3 87 aa8.96□□□□□ -0.98
USP3-205ENST00000557884 PLEKHB2Q96CS7 222 aa8.96□□□□□ -0.98
USP3-205ENST00000557884 NDUFA12Q9UI09 145 aa8.96□□□□□ -0.98
USP3-205ENST00000557884 A0A0U1RRA0 63 aa8.95□□□□□ -0.98
USP3-205ENST00000557884 SERTAD4-AS1Q5TG53 156 aa8.95□□□□□ -0.98
USP3-205ENST00000557884 HIST1H2BLQ99880 126 aa8.95□□□□□ -0.98
USP3-205ENST00000557884 J3QQQ9 107 aa8.94□□□□□ -0.98
USP3-205ENST00000557884 M0QXV9 152 aa8.94□□□□□ -0.98
USP3-205ENST00000557884 SNRPEP62304 92 aaKnown RBP8.94□□□□□ -0.98
USP3-205ENST00000557884 C20orf202A1L168 122 aa8.93□□□□□ -0.98
USP3-205ENST00000557884 LINC00158P58513 81 aa8.93□□□□□ -0.98
USP3-205ENST00000557884 MYMXA0A1B0GTQ4 84 aa8.92□□□□□ -0.98
USP3-205ENST00000557884 SMIM13P0DJ93 91 aa8.92□□□□□ -0.98
USP3-205ENST00000557884 LGALS3P17931 250 aaKnown RBP8.92□□□□□ -0.98
USP3-205ENST00000557884 PRR3P79522 188 aaKnown RBP8.92□□□□□ -0.98
USP3-205ENST00000557884 COX17Q14061 63 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms