RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 IGLV4-69A0A075B6H9 119 aa6.49□□□□□ -1.37
CCDC88C-206ENST00000553437 A0A096LNI7 61 aa6.49□□□□□ -1.37
CCDC88C-206ENST00000553437 IGHV3OR16-9A0A0B4J2B5 98 aa6.49□□□□□ -1.37
CCDC88C-206ENST00000553437 ZNF561-AS1K7EIQ3 104 aa6.49□□□□□ -1.37
CCDC88C-206ENST00000553437 HSBP1O75506 76 aa6.49□□□□□ -1.37
CCDC88C-206ENST00000553437 MALP21145 153 aa6.49□□□□□ -1.37
CCDC88C-206ENST00000553437 KRTDAPP60985 99 aa6.49□□□□□ -1.37
CCDC88C-206ENST00000553437 SYCNQ0VAF6 134 aa6.49□□□□□ -1.37
CCDC88C-206ENST00000553437 CHCHD1Q96BP2 118 aaKnown RBP6.49□□□□□ -1.37
CCDC88C-206ENST00000553437 DPH3Q96FX2 82 aa6.49□□□□□ -1.37
CCDC88C-206ENST00000553437 CARD19Q96LW7 228 aa6.49□□□□□ -1.37
CCDC88C-206ENST00000553437 C2orf88Q9BSF0 95 aa6.49□□□□□ -1.37
CCDC88C-206ENST00000553437 IGLV4-3A0A075B6K6 122 aa6.48□□□□□ -1.37
CCDC88C-206ENST00000553437 IGKV2-24A0A0C4DH68 120 aa6.48□□□□□ -1.37
CCDC88C-206ENST00000553437 KRTAP29-1A8MX34 341 aaPredicted RBP6.48□□□□□ -1.37
CCDC88C-206ENST00000553437 IFI27P40305 119 aaPredicted RBP6.48□□□□□ -1.37
CCDC88C-206ENST00000553437 HNRNPA3P51991 378 aaKnown RBP6.48□□□□□ -1.37
CCDC88C-206ENST00000553437 MAJINQ3KP22 176 aa6.48□□□□□ -1.37
CCDC88C-206ENST00000553437 Q6ZRU5 148 aa6.48□□□□□ -1.37
CCDC88C-206ENST00000553437 C3orf79P0CE67 100 aa6.47□□□□□ -1.37
CCDC88C-206ENST00000553437 PMCHL1Q16048 86 aa6.47□□□□□ -1.37
CCDC88C-206ENST00000553437 C2orf48Q96LS8 159 aa6.47□□□□□ -1.37
CCDC88C-206ENST00000553437 MIEN1Q9BRT3 115 aa6.47□□□□□ -1.37
CCDC88C-206ENST00000553437 C20orf202A1L168 122 aa6.46□□□□□ -1.38
CCDC88C-206ENST00000553437 IGIPA6NJ69 53 aa6.46□□□□□ -1.38
CCDC88C-206ENST00000553437 K7EMI3 77 aa6.46□□□□□ -1.38
CCDC88C-206ENST00000553437 APOMO95445 188 aa6.46□□□□□ -1.38
CCDC88C-206ENST00000553437 ORMDL2Q53FV1 153 aa6.46□□□□□ -1.38
CCDC88C-206ENST00000553437 LINC00242Q5T6M2 205 aa6.46□□□□□ -1.38
CCDC88C-206ENST00000553437 C2orf66Q6UXQ4 117 aa6.46□□□□□ -1.38
CCDC88C-206ENST00000553437 LINC00173Q6ZV60 143 aa6.46□□□□□ -1.38
CCDC88C-206ENST00000553437 FAM19A2Q8N3H0 131 aa6.46□□□□□ -1.38
CCDC88C-206ENST00000553437 STPG4Q8N801 248 aa6.46□□□□□ -1.38
CCDC88C-206ENST00000553437 TMEM141Q96I45 108 aa6.46□□□□□ -1.38
CCDC88C-206ENST00000553437 NXT2Q9NPJ8 142 aaKnown RBP6.46□□□□□ -1.38
CCDC88C-206ENST00000553437 CYSLTR1Q9Y271 337 aa6.46□□□□□ -1.38
CCDC88C-206ENST00000553437 PAM16Q9Y3D7 125 aa6.46□□□□□ -1.38
CCDC88C-206ENST00000553437 M0R143 59 aa6.45□□□□□ -1.38
CCDC88C-206ENST00000553437 UBE2D1P51668 147 aa6.45□□□□□ -1.38
CCDC88C-206ENST00000553437 SPAG11BQ08648 103 aa6.45□□□□□ -1.38
CCDC88C-206ENST00000553437 ZC2HC1BQ5TFG8 222 aa6.45□□□□□ -1.38
CCDC88C-206ENST00000553437 CAMK2N2Q96S95 79 aa6.45□□□□□ -1.38
CCDC88C-206ENST00000553437 AMELXQ99217 191 aa6.45□□□□□ -1.38
CCDC88C-206ENST00000553437 LINC00474Q9P2X8 69 aa6.45□□□□□ -1.38
CCDC88C-206ENST00000553437 PKIGQ9Y2B9 76 aa6.45□□□□□ -1.38
CCDC88C-206ENST00000553437 A0A087WZ39 114 aa6.44□□□□□ -1.38
CCDC88C-206ENST00000553437 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.44□□□□□ -1.38
CCDC88C-206ENST00000553437 NPSP0C0P6 89 aa6.44□□□□□ -1.38
CCDC88C-206ENST00000553437 LINC00614P0C842 121 aa6.44□□□□□ -1.38
CCDC88C-206ENST00000553437 PTTG1IPP53801 180 aa6.44□□□□□ -1.38
CCDC88C-206ENST00000553437 SPATA45Q537H7 98 aa6.44□□□□□ -1.38
CCDC88C-206ENST00000553437 ORAOV1Q8WV07 137 aa6.44□□□□□ -1.38
CCDC88C-206ENST00000553437 LOC107984640A0A0U1RRK4 108 aa6.43□□□□□ -1.38
CCDC88C-206ENST00000553437 LINC01546A6NGU7 62 aa6.43□□□□□ -1.38
CCDC88C-206ENST00000553437 F8WDY8 70 aa6.43□□□□□ -1.38
CCDC88C-206ENST00000553437 OXTP01178 125 aa6.43□□□□□ -1.38
CCDC88C-206ENST00000553437 KIAA0087Q14695 138 aa6.43□□□□□ -1.38
CCDC88C-206ENST00000553437 RNF151Q2KHN1 245 aa6.43□□□□□ -1.38
CCDC88C-206ENST00000553437 C10orf25Q5T742 122 aa6.43□□□□□ -1.38
CCDC88C-206ENST00000553437 URB1-AS1Q96HZ7 61 aa6.43□□□□□ -1.38
CCDC88C-206ENST00000553437 UQCR10Q9UDW1 63 aa6.43□□□□□ -1.38
CCDC88C-206ENST00000553437 HSPB8Q9UJY1 196 aa6.43□□□□□ -1.38
CCDC88C-206ENST00000553437 A0A0J9YXV3 536 aa6.42□□□□□ -1.38
CCDC88C-206ENST00000553437 A0A1B0GV90 55 aa6.42□□□□□ -1.38
CCDC88C-206ENST00000553437 LEPROTL1O95214 131 aa6.42□□□□□ -1.38
CCDC88C-206ENST00000553437 GAGE2BQ13066 116 aa6.42□□□□□ -1.38
CCDC88C-206ENST00000553437 FA2HQ7L5A8 372 aa6.42□□□□□ -1.38
CCDC88C-206ENST00000553437 FAM19A3Q7Z5A8 133 aa6.42□□□□□ -1.38
CCDC88C-206ENST00000553437 LINC00469Q8N7U9 141 aa6.42□□□□□ -1.38
CCDC88C-206ENST00000553437 C7orf33Q8WU49 177 aa6.42□□□□□ -1.38
CCDC88C-206ENST00000553437 TOMM6Q96B49 74 aa6.42□□□□□ -1.38
CCDC88C-206ENST00000553437 SNHG12Q9BXW3 62 aa6.42□□□□□ -1.38
CCDC88C-206ENST00000553437 VCX2Q9H322 139 aa6.42□□□□□ -1.38
CCDC88C-206ENST00000553437 MRPL35Q9NZE8 188 aaKnown RBP6.42□□□□□ -1.38
CCDC88C-206ENST00000553437 A0A1W2PNN7 141 aa6.41□□□□□ -1.38
CCDC88C-206ENST00000553437 G0S2P27469 103 aa6.41□□□□□ -1.38
CCDC88C-206ENST00000553437 PET117Q6UWS5 81 aa6.41□□□□□ -1.38
CCDC88C-206ENST00000553437 UNQ6190/PRO20217Q6UXQ8 127 aa6.41□□□□□ -1.38
CCDC88C-206ENST00000553437 Q6ZN92 141 aa6.41□□□□□ -1.38
CCDC88C-206ENST00000553437 LINC01561Q8N1V8 128 aa6.41□□□□□ -1.38
CCDC88C-206ENST00000553437 TIMM17AQ99595 171 aa6.41□□□□□ -1.38
CCDC88C-206ENST00000553437 SYS1-DBNDD2H3BUS1 97 aa6.4□□□□□ -1.38
CCDC88C-206ENST00000553437 NDUFA1O15239 70 aa6.4□□□□□ -1.38
CCDC88C-206ENST00000553437 IGLC3P0DOY3 106 aa6.4□□□□□ -1.38
CCDC88C-206ENST00000553437 PRR3P79522 188 aaKnown RBP6.4□□□□□ -1.38
CCDC88C-206ENST00000553437 MAP1LC3CQ9BXW4 147 aa6.4□□□□□ -1.38
CCDC88C-206ENST00000553437 KRTAP9-8Q9BYQ0 159 aa6.4□□□□□ -1.38
CCDC88C-206ENST00000553437 C6orf48Q9UBA6 75 aa6.4□□□□□ -1.38
CCDC88C-206ENST00000553437 TLX1NBP0CAT3 122 aa6.39□□□□□ -1.39
CCDC88C-206ENST00000553437 RPL18AQ02543 176 aaKnown RBP6.39□□□□□ -1.39
CCDC88C-206ENST00000553437 ERASQ7Z444 233 aa6.39□□□□□ -1.39
CCDC88C-206ENST00000553437 SCGB3A1Q96QR1 104 aa6.39□□□□□ -1.39
CCDC88C-206ENST00000553437 HSBP1L1C9JCN9 74 aa6.38□□□□□ -1.39
CCDC88C-206ENST00000553437 C9orf116Q5BN46 136 aaPredicted RBP6.38□□□□□ -1.39
CCDC88C-206ENST00000553437 PAPPA-AS1Q5QFB9 102 aa6.38□□□□□ -1.39
CCDC88C-206ENST00000553437 C2orf82Q6UX34 121 aa6.38□□□□□ -1.39
CCDC88C-206ENST00000553437 Q6ZRP5 223 aa6.38□□□□□ -1.39
CCDC88C-206ENST00000553437 MT1HL1P0DM35 61 aa6.37□□□□□ -1.39
CCDC88C-206ENST00000553437 LINC01545Q5VT33 79 aa6.37□□□□□ -1.39
CCDC88C-206ENST00000553437 ATOH7Q8N100 152 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 172.8 ms