RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 DMBT1Q9UGM3 2413 aaPredicted RBP9.59□□□□□ -0.87
SHMT2-204ENST00000553324 IGLV5-45A0A087WSX0 123 aa9.59□□□□□ -0.87
SHMT2-204ENST00000553324 NDUFC2-KCTD14E9PQ53 114 aa9.59□□□□□ -0.87
SHMT2-204ENST00000553324 ATP5LO75964 103 aa9.59□□□□□ -0.87
SHMT2-204ENST00000553324 CXCL5P42830 114 aa9.59□□□□□ -0.87
SHMT2-204ENST00000553324 PDZD11Q5EBL8 140 aa9.59□□□□□ -0.87
SHMT2-204ENST00000553324 C2orf82Q6UX34 121 aa9.59□□□□□ -0.87
SHMT2-204ENST00000553324 HERC1Q15751 4861 aa9.59□□□□□ -0.87
SHMT2-204ENST00000553324 H3BRM9 83 aa9.58□□□□□ -0.88
SHMT2-204ENST00000553324 SLC7A5P1Q8MH63 180 aa9.58□□□□□ -0.88
SHMT2-204ENST00000553324 CHCHD1Q96BP2 118 aaKnown RBP9.58□□□□□ -0.88
SHMT2-204ENST00000553324 URB1-AS1Q96HZ7 61 aa9.58□□□□□ -0.88
SHMT2-204ENST00000553324 PKHD1L1Q86WI1 4243 aa9.58□□□□□ -0.88
SHMT2-204ENST00000553324 A0A096LNJ9 63 aa9.57□□□□□ -0.88
SHMT2-204ENST00000553324 HNRNPA3P51991 378 aaKnown RBP9.57□□□□□ -0.88
SHMT2-204ENST00000553324 NDUFA6P56556 154 aa9.57□□□□□ -0.88
SHMT2-204ENST00000553324 PRR3P79522 188 aaKnown RBP9.57□□□□□ -0.88
SHMT2-204ENST00000553324 GAGE2EQ4V326 116 aa9.57□□□□□ -0.88
SHMT2-204ENST00000553324 GAGE2DQ9UEU5 116 aa9.57□□□□□ -0.88
SHMT2-204ENST00000553324 SMIM1B2RUZ4 78 aa9.56□□□□□ -0.88
SHMT2-204ENST00000553324 F8VRH5 84 aa9.56□□□□□ -0.88
SHMT2-204ENST00000553324 CBLN2Q8IUK8 224 aa9.56□□□□□ -0.88
SHMT2-204ENST00000553324 FAT3Q8TDW7 4589 aa9.55□□□□□ -0.88
SHMT2-204ENST00000553324 LRP1Q07954 4544 aaKnown RBP9.55□□□□□ -0.88
SHMT2-204ENST00000553324 IGLC3P0DOY3 106 aa9.54□□□□□ -0.88
SHMT2-204ENST00000553324 PMCHL1Q16048 86 aa9.54□□□□□ -0.88
SHMT2-204ENST00000553324 COX7B2Q8TF08 81 aa9.54□□□□□ -0.88
SHMT2-204ENST00000553324 SPINK6Q6UWN8 80 aa9.53□□□□□ -0.88
SHMT2-204ENST00000553324 SPINK8P0C7L1 97 aa9.52□□□□□ -0.89
SHMT2-204ENST00000553324 BAGE3Q86Y29 109 aa9.52□□□□□ -0.89
SHMT2-204ENST00000553324 ATP6V1G1O75348 118 aa9.51□□□□□ -0.89
SHMT2-204ENST00000553324 TRGC2P03986 189 aa9.51□□□□□ -0.89
SHMT2-204ENST00000553324 PHF5AQ7RTV0 110 aaKnown RBP9.51□□□□□ -0.89
SHMT2-204ENST00000553324 FAM168BA1KXE4 195 aa9.5□□□□□ -0.89
SHMT2-204ENST00000553324 HSBP1O75506 76 aa9.5□□□□□ -0.89
SHMT2-204ENST00000553324 FAM19A5Q7Z5A7 132 aaPredicted RBP9.5□□□□□ -0.89
SHMT2-204ENST00000553324 C9orf129Q5T035 196 aaKnown RBP9.49□□□□□ -0.89
SHMT2-204ENST00000553324 IFI27L1Q96BM0 104 aa9.49□□□□□ -0.89
SHMT2-204ENST00000553324 PSORS1C2Q9UIG4 136 aa9.49□□□□□ -0.89
SHMT2-204ENST00000553324 TRAV12-1A0A0B4J245 112 aa9.48□□□□□ -0.89
SHMT2-204ENST00000553324 IGLV5-39A0A0G2JS06 123 aa9.48□□□□□ -0.89
SHMT2-204ENST00000553324 ZNF22P17026 224 aaPredicted RBP9.48□□□□□ -0.89
SHMT2-204ENST00000553324 S100A1P23297 94 aa9.48□□□□□ -0.89
SHMT2-204ENST00000553324 SRSF9Q13242 221 aaKnown RBP eCLIP9.48□□□□□ -0.89
SHMT2-204ENST00000553324 ODF1Q14990 250 aa9.48□□□□□ -0.89
SHMT2-204ENST00000553324 CHTOPQ9Y3Y2 248 aaKnown RBP9.48□□□□□ -0.89
SHMT2-204ENST00000553324 M0QXV9 152 aa9.47□□□□□ -0.89
SHMT2-204ENST00000553324 C1orf137Q5JT78 98 aa9.47□□□□□ -0.89
SHMT2-204ENST00000553324 TMEM170BQ5T4T1 132 aa9.47□□□□□ -0.89
SHMT2-204ENST00000553324 SFTA2Q6UW10 78 aa9.47□□□□□ -0.89
SHMT2-204ENST00000553324 REG3GQ6UW15 175 aa9.47□□□□□ -0.89
SHMT2-204ENST00000553324 COLCA2A8K830 154 aa9.46□□□□□ -0.9
SHMT2-204ENST00000553324 UBE2BP63146 152 aa9.46□□□□□ -0.9
SHMT2-204ENST00000553324 LBHQ53QV2 105 aaPredicted RBP9.46□□□□□ -0.9
SHMT2-204ENST00000553324 SERTAD4-AS1Q5TG53 156 aa9.46□□□□□ -0.9
SHMT2-204ENST00000553324 C11orf86A6NJI1 115 aa9.45□□□□□ -0.9
SHMT2-204ENST00000553324 XAGE1AQ9HD64 81 aa9.45□□□□□ -0.9
SHMT2-204ENST00000553324 KRTAP7-1Q8IUC3 87 aa9.44□□□□□ -0.9
SHMT2-204ENST00000553324 FAM19A2Q8N3H0 131 aa9.44□□□□□ -0.9
SHMT2-204ENST00000553324 C22orf24Q9Y442 160 aa9.44□□□□□ -0.9
SHMT2-204ENST00000553324 LEPROTL1O95214 131 aa9.43□□□□□ -0.9
SHMT2-204ENST00000553324 COX17Q14061 63 aa9.43□□□□□ -0.9
SHMT2-204ENST00000553324 LINC01600Q96MT4 127 aa9.43□□□□□ -0.9
SHMT2-204ENST00000553324 TP73-AS1Q9UF72 201 aa9.43□□□□□ -0.9
SHMT2-204ENST00000553324 IGLV7-43P04211 117 aa9.42□□□□□ -0.9
SHMT2-204ENST00000553324 HSPB8Q9UJY1 196 aa9.42□□□□□ -0.9
SHMT2-204ENST00000553324 PLA2G2DQ9UNK4 145 aa9.42□□□□□ -0.9
SHMT2-204ENST00000553324 SERF1AO75920 110 aa9.41□□□□□ -0.9
SHMT2-204ENST00000553324 DIRC1Q969H9 104 aa9.4□□□□□ -0.9
SHMT2-204ENST00000553324 TMEM223A0PJW6 202 aa9.39□□□□□ -0.91
SHMT2-204ENST00000553324 NUPR1O60356 82 aa9.39□□□□□ -0.91
SHMT2-204ENST00000553324 MT1HL1P0DM35 61 aa9.39□□□□□ -0.91
SHMT2-204ENST00000553324 PFN2P35080 140 aa9.39□□□□□ -0.91
SHMT2-204ENST00000553324 MRPL55Q7Z7F7 128 aaKnown RBP9.39□□□□□ -0.91
SHMT2-204ENST00000553324 ERG28Q9UKR5 140 aa9.39□□□□□ -0.91
SHMT2-204ENST00000553324 KRTAP11-1Q8IUC1 163 aa9.38□□□□□ -0.91
SHMT2-204ENST00000553324 LINC00310P59036 64 aa9.37□□□□□ -0.91
SHMT2-204ENST00000553324 TNXBP22105 4242 aa9.37□□□□□ -0.91
SHMT2-204ENST00000553324 IGLV5-37A0A075B6J1 123 aa9.36□□□□□ -0.91
SHMT2-204ENST00000553324 H0Y8G0 127 aa9.36□□□□□ -0.91
SHMT2-204ENST00000553324 NKAPP1Q8N9T2 125 aa9.36□□□□□ -0.91
SHMT2-204ENST00000553324 ZNF625Q96I27 306 aaPredicted RBP9.36□□□□□ -0.91
SHMT2-204ENST00000553324 LINC00587B1AMM8 73 aa9.35□□□□□ -0.91
SHMT2-204ENST00000553324 FABP4P15090 132 aa9.35□□□□□ -0.91
SHMT2-204ENST00000553324 PLNP26678 52 aa9.35□□□□□ -0.91
SHMT2-204ENST00000553324 RPL24P83731 157 aaKnown RBP9.35□□□□□ -0.91
SHMT2-204ENST00000553324 H0Y9J4 135 aa9.34□□□□□ -0.91
SHMT2-204ENST00000553324 KRTAP10-8P60410 259 aa9.34□□□□□ -0.91
SHMT2-204ENST00000553324 HERV-K104P63124 156 aa9.34□□□□□ -0.91
SHMT2-204ENST00000553324 LINC00167Q96N53 147 aa9.34□□□□□ -0.91
SHMT2-204ENST00000553324 MAP1LC3CQ9BXW4 147 aa9.34□□□□□ -0.91
SHMT2-204ENST00000553324 SND1-IT1Q9HBX3 110 aa9.34□□□□□ -0.91
SHMT2-204ENST00000553324 ZNF861PO60384 105 aa9.33□□□□□ -0.92
SHMT2-204ENST00000553324 SCO1O75880 301 aa9.33□□□□□ -0.92
SHMT2-204ENST00000553324 LINC00158P58513 81 aa9.33□□□□□ -0.92
SHMT2-204ENST00000553324 HIST1H2BKO60814 126 aa9.31□□□□□ -0.92
SHMT2-204ENST00000553324 DPM2O94777 84 aa9.31□□□□□ -0.92
SHMT2-204ENST00000553324 HIST1H2BJP06899 126 aa9.31□□□□□ -0.92
SHMT2-204ENST00000553324 HIST1H2BOP23527 126 aa9.31□□□□□ -0.92
SHMT2-204ENST00000553324 HIST1H2BBP33778 126 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms