RNA–Protein interactions for RNA: ENST00000550841.1

NEK3-202, Transcript of NIMA related kinase 3, humanhuman

TSL 4

Gene NEK3, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-202ENST00000550841 IGKCP01834 107 aa13.82□□□□□ -0.2
NEK3-202ENST00000550841 IGLV5-39A0A0G2JS06 123 aa13.81□□□□□ -0.2
NEK3-202ENST00000550841 TRBV30A0A0K0K1B3 111 aa13.81□□□□□ -0.2
NEK3-202ENST00000550841 TMEM223A0PJW6 202 aa13.81□□□□□ -0.2
NEK3-202ENST00000550841 C3orf79P0CE67 100 aa13.81□□□□□ -0.2
NEK3-202ENST00000550841 KRTDAPP60985 99 aa13.81□□□□□ -0.2
NEK3-202ENST00000550841 SNRPEP62304 92 aaKnown RBP13.81□□□□□ -0.2
NEK3-202ENST00000550841 UNQ6190/PRO20217Q6UXQ8 127 aa13.81□□□□□ -0.2
NEK3-202ENST00000550841 DNAH5Q8TE73 4624 aa13.81□□□□□ -0.2
NEK3-202ENST00000550841 LINC01545Q5VT33 79 aa13.79□□□□□ -0.2
NEK3-202ENST00000550841 C2orf82Q6UX34 121 aa13.79□□□□□ -0.2
NEK3-202ENST00000550841 PMCHL2Q9BQD1 86 aa13.79□□□□□ -0.2
NEK3-202ENST00000550841 KRTAP4-5Q9BYR2 181 aa13.79□□□□□ -0.2
NEK3-202ENST00000550841 LOC107984640A0A0U1RRK4 108 aa13.78□□□□□ -0.2
NEK3-202ENST00000550841 C20orf202A1L168 122 aa13.78□□□□□ -0.2
NEK3-202ENST00000550841 C5orf52A6NGY3 159 aa13.78□□□□□ -0.2
NEK3-202ENST00000550841 CDK2AP2O75956 126 aa13.78□□□□□ -0.2
NEK3-202ENST00000550841 AKR1D1P51857 326 aa13.78□□□□□ -0.2
NEK3-202ENST00000550841 C10orf25Q5T742 122 aa13.78□□□□□ -0.2
NEK3-202ENST00000550841 HIST1H2BLQ99880 126 aa13.78□□□□□ -0.2
NEK3-202ENST00000550841 HERVK_113P61574 105 aa13.77□□□□□ -0.21
NEK3-202ENST00000550841 Q6ZSA8 131 aa13.77□□□□□ -0.21
NEK3-202ENST00000550841 SFTA2Q6UW10 78 aa13.76□□□□□ -0.21
NEK3-202ENST00000550841 LINC00474Q9P2X8 69 aa13.76□□□□□ -0.21
NEK3-202ENST00000550841 C6orf48Q9UBA6 75 aa13.76□□□□□ -0.21
NEK3-202ENST00000550841 RYR1P21817 5038 aa13.76□□□□□ -0.21
NEK3-202ENST00000550841 DPH3Q96FX2 82 aa13.75□□□□□ -0.21
NEK3-202ENST00000550841 FAM30AQ9NZY2 134 aa13.75□□□□□ -0.21
NEK3-202ENST00000550841 TLX1NBP0CAT3 122 aa13.74□□□□□ -0.21
NEK3-202ENST00000550841 LRP1BQ9NZR2 4599 aa13.73□□□□□ -0.21
NEK3-202ENST00000550841 PLEKHB2Q96CS7 222 aa13.72□□□□□ -0.21
NEK3-202ENST00000550841 GAGE2BQ13066 116 aa13.71□□□□□ -0.21
NEK3-202ENST00000550841 LEPROTO15243 131 aa13.7□□□□□ -0.22
NEK3-202ENST00000550841 PTTG1IPP53801 180 aa13.7□□□□□ -0.22
NEK3-202ENST00000550841 RPL18AQ02543 176 aaKnown RBP13.7□□□□□ -0.22
NEK3-202ENST00000550841 CIRBPQ14011 172 aaKnown RBP13.7□□□□□ -0.22
NEK3-202ENST00000550841 A0A096LNI7 61 aa13.69□□□□□ -0.22
NEK3-202ENST00000550841 IGKV2-24A0A0C4DH68 120 aa13.69□□□□□ -0.22
NEK3-202ENST00000550841 NDUFC2-KCTD14E9PQ53 114 aa13.69□□□□□ -0.22
NEK3-202ENST00000550841 XGP55808 180 aa13.69□□□□□ -0.22
NEK3-202ENST00000550841 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.69□□□□□ -0.22
NEK3-202ENST00000550841 MAJINQ3KP22 176 aa13.68□□□□□ -0.22
NEK3-202ENST00000550841 C9orf116Q5BN46 136 aaPredicted RBP13.68□□□□□ -0.22
NEK3-202ENST00000550841 SPACA4Q8TDM5 124 aa13.68□□□□□ -0.22
NEK3-202ENST00000550841 ABCA13Q86UQ4 5058 aa13.67□□□□□ -0.22
NEK3-202ENST00000550841 CHTF8P0CG12 524 aa13.67□□□□□ -0.22
NEK3-202ENST00000550841 E9PLD3 99 aa13.66□□□□□ -0.22
NEK3-202ENST00000550841 Q6ZRP5 223 aa13.66□□□□□ -0.22
NEK3-202ENST00000550841 ZNF625Q96I27 306 aaPredicted RBP13.66□□□□□ -0.22
NEK3-202ENST00000550841 MYMXA0A1B0GTQ4 84 aa13.65□□□□□ -0.22
NEK3-202ENST00000550841 J3QQQ9 107 aa13.65□□□□□ -0.22
NEK3-202ENST00000550841 LGALS3P17931 250 aaKnown RBP13.65□□□□□ -0.22
NEK3-202ENST00000550841 HERV-K104P63124 156 aa13.65□□□□□ -0.22
NEK3-202ENST00000550841 SCXQ7RTU7 201 aa13.65□□□□□ -0.22
NEK3-202ENST00000550841 CIRBP-AS1Q8TBR5 109 aa13.65□□□□□ -0.22
NEK3-202ENST00000550841 PANO1I0J062 215 aa13.64□□□□□ -0.23
NEK3-202ENST00000550841 NMUP48645 174 aa13.64□□□□□ -0.23
NEK3-202ENST00000550841 COX17Q14061 63 aa13.64□□□□□ -0.23
NEK3-202ENST00000550841 GAGE2EQ4V326 116 aa13.64□□□□□ -0.23
NEK3-202ENST00000550841 GAGE2DQ9UEU5 116 aa13.64□□□□□ -0.23
NEK3-202ENST00000550841 NDUFA12Q9UI09 145 aa13.64□□□□□ -0.23
NEK3-202ENST00000550841 TMA7Q9Y2S6 64 aaKnown RBP13.64□□□□□ -0.23
NEK3-202ENST00000550841 DNAH8Q96JB1 4490 aa13.64□□□□□ -0.23
NEK3-202ENST00000550841 LINC00587B1AMM8 73 aa13.63□□□□□ -0.23
NEK3-202ENST00000550841 Q8N1X5 172 aa13.63□□□□□ -0.23
NEK3-202ENST00000550841 STPG4Q8N801 248 aa13.63□□□□□ -0.23
NEK3-202ENST00000550841 HSPG2P98160 4391 aa13.63□□□□□ -0.23
NEK3-202ENST00000550841 A0A087WYN8 130 aa13.62□□□□□ -0.23
NEK3-202ENST00000550841 ERG28Q9UKR5 140 aa13.62□□□□□ -0.23
NEK3-202ENST00000550841 HAMPP81172 84 aa13.61□□□□□ -0.23
NEK3-202ENST00000550841 PLAC8Q9NZF1 115 aa13.61□□□□□ -0.23
NEK3-202ENST00000550841 PFN2P35080 140 aa13.6□□□□□ -0.23
NEK3-202ENST00000550841 SCGB1D1O95968 90 aa13.59□□□□□ -0.23
NEK3-202ENST00000550841 TSPEAR-AS2P59090 65 aa13.58□□□□□ -0.24
NEK3-202ENST00000550841 ATOH7Q8N100 152 aa13.58□□□□□ -0.24
NEK3-202ENST00000550841 LINC00158P58513 81 aa13.57□□□□□ -0.24
NEK3-202ENST00000550841 MEIG1Q5JSS6 88 aa13.57□□□□□ -0.24
NEK3-202ENST00000550841 HSBP1L1C9JCN9 74 aa13.56□□□□□ -0.24
NEK3-202ENST00000550841 APOBP04114 4563 aaKnown RBP13.56□□□□□ -0.24
NEK3-202ENST00000550841 C9orf129Q5T035 196 aaKnown RBP13.54□□□□□ -0.24
NEK3-202ENST00000550841 XAGE1AQ9HD64 81 aa13.54□□□□□ -0.24
NEK3-202ENST00000550841 A0A1W2PNN7 141 aa13.53□□□□□ -0.24
NEK3-202ENST00000550841 EPM2AB3EWF7 344 aa13.53□□□□□ -0.24
NEK3-202ENST00000550841 FAM229AH3BQW9 127 aa13.53□□□□□ -0.24
NEK3-202ENST00000550841 SMR3BP02814 79 aaPredicted RBP13.53□□□□□ -0.24
NEK3-202ENST00000550841 IGKV2D-26A0A0A0MRZ7 120 aa13.51□□□□□ -0.25
NEK3-202ENST00000550841 SMIM13P0DJ93 91 aa13.51□□□□□ -0.25
NEK3-202ENST00000550841 ANKRD39Q53RE8 183 aa13.51□□□□□ -0.25
NEK3-202ENST00000550841 C7orf33Q8WU49 177 aa13.51□□□□□ -0.25
NEK3-202ENST00000550841 SND1-IT1Q9HBX3 110 aa13.5□□□□□ -0.25
NEK3-202ENST00000550841 A0A0U1RRA0 63 aa13.49□□□□□ -0.25
NEK3-202ENST00000550841 ZNF815PA8K554 130 aa13.49□□□□□ -0.25
NEK3-202ENST00000550841 LINC00528Q8N1L1 170 aa13.49□□□□□ -0.25
NEK3-202ENST00000550841 PLA2G2DQ9UNK4 145 aa13.49□□□□□ -0.25
NEK3-202ENST00000550841 A0A0J9YXY3 114 aa13.48□□□□□ -0.25
NEK3-202ENST00000550841 FAM168BA1KXE4 195 aa13.48□□□□□ -0.25
NEK3-202ENST00000550841 JOSD1Q15040 202 aaPredicted RBP13.48□□□□□ -0.25
NEK3-202ENST00000550841 FAM19A5Q7Z5A7 132 aaPredicted RBP13.48□□□□□ -0.25
NEK3-202ENST00000550841 MIR7-3HGQ8N6C7 128 aa13.46□□□□□ -0.25
NEK3-202ENST00000550841 PLA2G1BP04054 148 aaKnown RBP13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 111.4 ms