RNA–Protein interactions for RNA: ENST00000548825.6

PRPF40B-209, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

APPRIS P2 TSL 5 BASIC

Gene PRPF40B, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-209ENST00000548825 TRBV6-4A0A1B0GX49 114 aa9.58□□□□□ -0.88
PRPF40B-209ENST00000548825 DAD1P61803 113 aa9.57□□□□□ -0.88
PRPF40B-209ENST00000548825 LINC00337Q8N6G1 96 aa9.57□□□□□ -0.88
PRPF40B-209ENST00000548825 SHISA2Q6UWI4 295 aa9.57□□□□□ -0.88
PRPF40B-209ENST00000548825 CITED1Q99966 193 aa9.57□□□□□ -0.88
PRPF40B-209ENST00000548825 CSNK1G2-AS1Q8NCQ2 148 aa9.56□□□□□ -0.88
PRPF40B-209ENST00000548825 SS18Q15532 418 aa9.56□□□□□ -0.88
PRPF40B-209ENST00000548825 IGLV5-45A0A087WSX0 123 aa9.56□□□□□ -0.88
PRPF40B-209ENST00000548825 LINC00959A0A1B0GUT2 108 aa9.56□□□□□ -0.88
PRPF40B-209ENST00000548825 CCL18P55774 89 aa9.56□□□□□ -0.88
PRPF40B-209ENST00000548825 B5MCH6 92 aa9.55□□□□□ -0.88
PRPF40B-209ENST00000548825 COX7A2LO14548 114 aa9.55□□□□□ -0.88
PRPF40B-209ENST00000548825 LECT2O14960 151 aa9.55□□□□□ -0.88
PRPF40B-209ENST00000548825 CMC4P56277 68 aaPredicted RBP9.55□□□□□ -0.88
PRPF40B-209ENST00000548825 SBSPONQ8IVN8 264 aa9.55□□□□□ -0.88
PRPF40B-209ENST00000548825 IL17DQ8TAD2 202 aa9.55□□□□□ -0.88
PRPF40B-209ENST00000548825 FAM110AQ9BQ89 295 aa9.55□□□□□ -0.88
PRPF40B-209ENST00000548825 BAHCC1Q9P281 2608 aa9.55□□□□□ -0.88
PRPF40B-209ENST00000548825 SMIM11BQ8TCY0 68 aa9.54□□□□□ -0.88
PRPF40B-209ENST00000548825 HERV-K104P63124 156 aa9.53□□□□□ -0.88
PRPF40B-209ENST00000548825 COPS9Q8WXC6 57 aa9.53□□□□□ -0.88
PRPF40B-209ENST00000548825 A0A087WYN8 130 aa9.53□□□□□ -0.88
PRPF40B-209ENST00000548825 PRO0255Q9UI72 69 aa9.53□□□□□ -0.88
PRPF40B-209ENST00000548825 C14orf132Q9NPU4 83 aa9.53□□□□□ -0.88
PRPF40B-209ENST00000548825 ANK3Q12955 4377 aaKnown RBP9.52□□□□□ -0.89
PRPF40B-209ENST00000548825 IGHV3OR16-9A0A0B4J2B5 98 aa9.52□□□□□ -0.89
PRPF40B-209ENST00000548825 TIMM17BO60830 172 aa9.52□□□□□ -0.89
PRPF40B-209ENST00000548825 SS18L2Q9UHA2 77 aa9.52□□□□□ -0.89
PRPF40B-209ENST00000548825 KLK12Q9UKR0 248 aa9.52□□□□□ -0.89
PRPF40B-209ENST00000548825 CELA1Q9UNI1 258 aa9.52□□□□□ -0.89
PRPF40B-209ENST00000548825 IGHV4-28A0A0C4DH34 117 aa9.52□□□□□ -0.89
PRPF40B-209ENST00000548825 H3BT86 120 aa9.52□□□□□ -0.89
PRPF40B-209ENST00000548825 NCR3O14931 201 aa9.52□□□□□ -0.89
PRPF40B-209ENST00000548825 CSDC2Q9Y534 153 aaKnown RBP9.52□□□□□ -0.89
PRPF40B-209ENST00000548825 SCGB1A1P11684 91 aa9.51□□□□□ -0.89
PRPF40B-209ENST00000548825 TENM3Q9P273 2699 aa9.51□□□□□ -0.89
PRPF40B-209ENST00000548825 TRAV13-2A0A0B4J235 113 aa9.51□□□□□ -0.89
PRPF40B-209ENST00000548825 IGKV2-28A0A075B6P5 120 aa9.5□□□□□ -0.89
PRPF40B-209ENST00000548825 IGKV2D-28P01615 120 aa9.5□□□□□ -0.89
PRPF40B-209ENST00000548825 RETNQ9HD89 108 aa9.5□□□□□ -0.89
PRPF40B-209ENST00000548825 C6orf223Q8N319 242 aa9.5□□□□□ -0.89
PRPF40B-209ENST00000548825 X6R8D5 127 aa9.5□□□□□ -0.89
PRPF40B-209ENST00000548825 OXLD1Q5BKU9 147 aa9.49□□□□□ -0.89
PRPF40B-209ENST00000548825 OVOL2Q9BRP0 275 aa9.49□□□□□ -0.89
PRPF40B-209ENST00000548825 C16orf95Q9H693 158 aa9.49□□□□□ -0.89
PRPF40B-209ENST00000548825 CHCHD10Q8WYQ3 142 aaPredicted RBP9.49□□□□□ -0.89
PRPF40B-209ENST00000548825 REG3AQ06141 175 aa9.48□□□□□ -0.89
PRPF40B-209ENST00000548825 C9orf129Q5T035 196 aaKnown RBP9.48□□□□□ -0.89
PRPF40B-209ENST00000548825 A0A087WZ39 114 aa9.47□□□□□ -0.89
PRPF40B-209ENST00000548825 IGKV3D-7A0A0C4DH55 119 aa9.47□□□□□ -0.89
PRPF40B-209ENST00000548825 CCDC179H3BU77 68 aa9.47□□□□□ -0.89
PRPF40B-209ENST00000548825 NDUFV3P56181 108 aaKnown RBP9.47□□□□□ -0.89
PRPF40B-209ENST00000548825 S100A7L2Q5SY68 101 aa9.46□□□□□ -0.89
PRPF40B-209ENST00000548825 XAGE1AQ9HD64 81 aa9.46□□□□□ -0.89
PRPF40B-209ENST00000548825 FAM236AA0A1B0GUQ0 79 aa9.45□□□□□ -0.9
PRPF40B-209ENST00000548825 FAM236BA0A1B0GV22 79 aa9.45□□□□□ -0.9
PRPF40B-209ENST00000548825 HIGD2BQ4VC39 106 aa9.45□□□□□ -0.9
PRPF40B-209ENST00000548825 C9orf66Q5T8R8 295 aa9.45□□□□□ -0.9
PRPF40B-209ENST00000548825 PRB2P02812 416 aaPredicted RBP9.44□□□□□ -0.9
PRPF40B-209ENST00000548825 UNQ6190/PRO20217Q6UXQ8 127 aa9.44□□□□□ -0.9
PRPF40B-209ENST00000548825 IBA57-AS1B1ANH7 110 aa9.43□□□□□ -0.9
PRPF40B-209ENST00000548825 IGHV4-30-4P0DP06 118 aa9.43□□□□□ -0.9
PRPF40B-209ENST00000548825 C10orf25Q5T742 122 aa9.42□□□□□ -0.9
PRPF40B-209ENST00000548825 SDIM1Q6ZPB5 146 aa9.42□□□□□ -0.9
PRPF40B-209ENST00000548825 APOC4P55056 127 aa9.42□□□□□ -0.9
PRPF40B-209ENST00000548825 RPL18AQ02543 176 aaKnown RBP9.42□□□□□ -0.9
PRPF40B-209ENST00000548825 SPAG11BQ08648 103 aa9.41□□□□□ -0.9
PRPF40B-209ENST00000548825 KIR2DL5BQ8NHK3 375 aa9.41□□□□□ -0.9
PRPF40B-209ENST00000548825 SMCR5Q8TEV8 140 aa9.41□□□□□ -0.9
PRPF40B-209ENST00000548825 SPART-AS1P0CW21 52 aa9.4□□□□□ -0.9
PRPF40B-209ENST00000548825 C6orf99Q4VX62 202 aa9.4□□□□□ -0.9
PRPF40B-209ENST00000548825 HIST1H4AP62805 103 aaKnown RBP9.39□□□□□ -0.91
PRPF40B-209ENST00000548825 TRACP01848 142 aa9.39□□□□□ -0.91
PRPF40B-209ENST00000548825 RPL28P46779 137 aaKnown RBP9.39□□□□□ -0.91
PRPF40B-209ENST00000548825 KMT2BQ9UMN6 2715 aaPredicted RBP9.38□□□□□ -0.91
PRPF40B-209ENST00000548825 NHLRC4P0CG21 123 aaPredicted RBP9.38□□□□□ -0.91
PRPF40B-209ENST00000548825 MRPL23Q16540 153 aaKnown RBP9.38□□□□□ -0.91
PRPF40B-209ENST00000548825 WFDC9Q8NEX5 89 aa9.38□□□□□ -0.91
PRPF40B-209ENST00000548825 MRAPQ8TCY5 172 aa9.37□□□□□ -0.91
PRPF40B-209ENST00000548825 CD164L2Q6UWJ8 174 aa9.37□□□□□ -0.91
PRPF40B-209ENST00000548825 A0A087WVE0 104 aa9.36□□□□□ -0.91
PRPF40B-209ENST00000548825 LAMTOR3Q9UHA4 124 aa9.36□□□□□ -0.91
PRPF40B-209ENST00000548825 CYSRT1A8MQ03 144 aa9.36□□□□□ -0.91
PRPF40B-209ENST00000548825 LYRM9A8MSI8 78 aa9.36□□□□□ -0.91
PRPF40B-209ENST00000548825 INAFM2P0DMQ5 153 aa9.36□□□□□ -0.91
PRPF40B-209ENST00000548825 CXCL5P42830 114 aa9.35□□□□□ -0.91
PRPF40B-209ENST00000548825 ORMDL1Q9P0S3 153 aa9.35□□□□□ -0.91
PRPF40B-209ENST00000548825 FAM19A3Q7Z5A8 133 aa9.34□□□□□ -0.91
PRPF40B-209ENST00000548825 WFDC10BQ8IUB3 73 aa9.34□□□□□ -0.91
PRPF40B-209ENST00000548825 Q8IZM0 81 aa9.34□□□□□ -0.91
PRPF40B-209ENST00000548825 SMIM9A6NGZ8 99 aa9.34□□□□□ -0.91
PRPF40B-209ENST00000548825 H0YGX0 51 aa9.34□□□□□ -0.91
PRPF40B-209ENST00000548825 M0QXV9 152 aa9.33□□□□□ -0.92
PRPF40B-209ENST00000548825 Q6ZTC4 211 aa9.33□□□□□ -0.92
PRPF40B-209ENST00000548825 Q8NDZ9 215 aa9.33□□□□□ -0.92
PRPF40B-209ENST00000548825 A0A1B0GUV1 79 aa9.33□□□□□ -0.92
PRPF40B-209ENST00000548825 ZNF561-AS1K7EIQ3 104 aa9.33□□□□□ -0.92
PRPF40B-209ENST00000548825 IGKV2D-24A0A075B6R9 120 aa9.32□□□□□ -0.92
PRPF40B-209ENST00000548825 Q8NAQ8 132 aa9.32□□□□□ -0.92
PRPF40B-209ENST00000548825 LINC00846Q9NV44 126 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms