RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 ORMDL3Q8N138 153 aa9.81□□□□□ -0.84
VPS29-204ENST00000548259 CXCL5P42830 114 aa9.8□□□□□ -0.84
VPS29-204ENST00000548259 LINC00167Q96N53 147 aa9.8□□□□□ -0.84
VPS29-204ENST00000548259 ADIRFQ15847 76 aa9.79□□□□□ -0.84
VPS29-204ENST00000548259 PPDPFQ9H3Y8 114 aa9.79□□□□□ -0.84
VPS29-204ENST00000548259 CYSLTR1Q9Y271 337 aa9.79□□□□□ -0.84
VPS29-204ENST00000548259 SRP19P09132 144 aaKnown RBP9.78□□□□□ -0.84
VPS29-204ENST00000548259 MRPL54Q6P161 138 aaKnown RBP9.78□□□□□ -0.84
VPS29-204ENST00000548259 TMEM136Q6ZRR5 245 aa9.78□□□□□ -0.84
VPS29-204ENST00000548259 NKAPP1Q8N9T2 125 aa9.78□□□□□ -0.84
VPS29-204ENST00000548259 GAGE10A6NGK3 116 aa9.77□□□□□ -0.85
VPS29-204ENST00000548259 NPSP0C0P6 89 aa9.77□□□□□ -0.85
VPS29-204ENST00000548259 RPL23P62829 140 aaKnown RBP9.77□□□□□ -0.85
VPS29-204ENST00000548259 HERVK_113P63121 156 aa9.77□□□□□ -0.85
VPS29-204ENST00000548259 PAPPA-AS1Q5QFB9 102 aa9.77□□□□□ -0.85
VPS29-204ENST00000548259 LINC00337Q8N6G1 96 aa9.77□□□□□ -0.85
VPS29-204ENST00000548259 PRELID3AQ96N28 172 aa9.77□□□□□ -0.85
VPS29-204ENST00000548259 GEMIN7Q9H840 131 aaKnown RBP9.76□□□□□ -0.85
VPS29-204ENST00000548259 MUC17Q685J3 4493 aa9.76□□□□□ -0.85
VPS29-204ENST00000548259 AMELXQ99217 191 aa9.75□□□□□ -0.85
VPS29-204ENST00000548259 MAP1LC3AQ9H492 121 aa9.75□□□□□ -0.85
VPS29-204ENST00000548259 NAT8Q9UHE5 227 aa9.75□□□□□ -0.85
VPS29-204ENST00000548259 LAMTOR2Q9Y2Q5 125 aa9.75□□□□□ -0.85
VPS29-204ENST00000548259 SPAG11AQ6PDA7 123 aa9.74□□□□□ -0.85
VPS29-204ENST00000548259 C2orf66Q6UXQ4 117 aa9.74□□□□□ -0.85
VPS29-204ENST00000548259 KRTAP13-1Q8IUC0 172 aa9.74□□□□□ -0.85
VPS29-204ENST00000548259 LOC389332A0A1B0GUA5 103 aa9.73□□□□□ -0.85
VPS29-204ENST00000548259 A0A1B0GXF2 115 aa9.73□□□□□ -0.85
VPS29-204ENST00000548259 PNRC1Q12796 327 aaPredicted RBP9.73□□□□□ -0.85
VPS29-204ENST00000548259 ORMDL2Q53FV1 153 aa9.73□□□□□ -0.85
VPS29-204ENST00000548259 FP248Q71RG6 208 aaPredicted RBP9.73□□□□□ -0.85
VPS29-204ENST00000548259 FAM19A3Q7Z5A8 133 aa9.73□□□□□ -0.85
VPS29-204ENST00000548259 IGLV5-37A0A075B6J1 123 aa9.72□□□□□ -0.85
VPS29-204ENST00000548259 G0S2P27469 103 aa9.72□□□□□ -0.85
VPS29-204ENST00000548259 ZC2HC1BQ5TFG8 222 aa9.72□□□□□ -0.85
VPS29-204ENST00000548259 CRCT1Q9UGL9 99 aa9.72□□□□□ -0.85
VPS29-204ENST00000548259 CDKN2A-AS1Q9UH64 79 aa9.72□□□□□ -0.85
VPS29-204ENST00000548259 PRSS47A8MTI9 375 aa9.71□□□□□ -0.86
VPS29-204ENST00000548259 C4orf48Q5BLP8 95 aa9.71□□□□□ -0.86
VPS29-204ENST00000548259 ATP5L2Q7Z4Y8 100 aa9.71□□□□□ -0.86
VPS29-204ENST00000548259 KRTAP3-3Q9BYR6 98 aa9.71□□□□□ -0.86
VPS29-204ENST00000548259 KRTAP3-2Q9BYR7 98 aa9.71□□□□□ -0.86
VPS29-204ENST00000548259 K7EMI3 77 aa9.7□□□□□ -0.86
VPS29-204ENST00000548259 IGKV2-28A0A075B6P5 120 aa9.69□□□□□ -0.86
VPS29-204ENST00000548259 IGKV2D-28P01615 120 aa9.69□□□□□ -0.86
VPS29-204ENST00000548259 Q8N8P6 123 aa9.69□□□□□ -0.86
VPS29-204ENST00000548259 ASB16-AS1Q495Z4 193 aa9.68□□□□□ -0.86
VPS29-204ENST00000548259 FAM19A1Q7Z5A9 133 aa9.68□□□□□ -0.86
VPS29-204ENST00000548259 COX7B2Q8TF08 81 aa9.68□□□□□ -0.86
VPS29-204ENST00000548259 IGIPA6NJ69 53 aa9.67□□□□□ -0.86
VPS29-204ENST00000548259 SEC61BP60468 96 aaKnown RBP9.67□□□□□ -0.86
VPS29-204ENST00000548259 RAB5BP61020 215 aa9.67□□□□□ -0.86
VPS29-204ENST00000548259 PRLHP81277 87 aa9.67□□□□□ -0.86
VPS29-204ENST00000548259 PDZD11Q5EBL8 140 aa9.67□□□□□ -0.86
VPS29-204ENST00000548259 GNB1LQ9BYB4 327 aa9.67□□□□□ -0.86
VPS29-204ENST00000548259 FSIP2Q5CZC0 6907 aa9.67□□□□□ -0.86
VPS29-204ENST00000548259 SMIM1B2RUZ4 78 aa9.64□□□□□ -0.87
VPS29-204ENST00000548259 PEA15Q15121 130 aa9.64□□□□□ -0.87
VPS29-204ENST00000548259 CBLN2Q8IUK8 224 aa9.64□□□□□ -0.87
VPS29-204ENST00000548259 TIMM17AQ99595 171 aa9.64□□□□□ -0.87
VPS29-204ENST00000548259 NXT2Q9NPJ8 142 aaKnown RBP9.64□□□□□ -0.87
VPS29-204ENST00000548259 ATP5LO75964 103 aa9.63□□□□□ -0.87
VPS29-204ENST00000548259 SRSF3P84103 164 aaKnown RBP9.63□□□□□ -0.87
VPS29-204ENST00000548259 C3orf22Q8N5N4 141 aa9.63□□□□□ -0.87
VPS29-204ENST00000548259 PLEKHB2Q96CS7 222 aa9.63□□□□□ -0.87
VPS29-204ENST00000548259 TMEM126AQ9H061 195 aa9.63□□□□□ -0.87
VPS29-204ENST00000548259 A0A1B0GVG6 124 aa9.62□□□□□ -0.87
VPS29-204ENST00000548259 RPL24P83731 157 aaKnown RBP9.62□□□□□ -0.87
VPS29-204ENST00000548259 AKAP14Q86UN6 197 aa9.62□□□□□ -0.87
VPS29-204ENST00000548259 KRTAP13-3Q3SY46 172 aa9.61□□□□□ -0.87
VPS29-204ENST00000548259 NDUFA12Q9UI09 145 aa9.61□□□□□ -0.87
VPS29-204ENST00000548259 TINCRA0A1B0GVN0 87 aa9.6□□□□□ -0.87
VPS29-204ENST00000548259 HIGD2AQ9BW72 106 aa9.6□□□□□ -0.87
VPS29-204ENST00000548259 ZNF706Q9Y5V0 76 aaPredicted RBP9.6□□□□□ -0.87
VPS29-204ENST00000548259 TMEM238C9JI98 176 aa9.59□□□□□ -0.87
VPS29-204ENST00000548259 SCO1O75880 301 aa9.59□□□□□ -0.87
VPS29-204ENST00000548259 TOMM6Q96B49 74 aa9.59□□□□□ -0.87
VPS29-204ENST00000548259 C9JQL5 133 aa9.58□□□□□ -0.88
VPS29-204ENST00000548259 ERASQ7Z444 233 aa9.58□□□□□ -0.88
VPS29-204ENST00000548259 SCGB3A1Q96QR1 104 aa9.58□□□□□ -0.88
VPS29-204ENST00000548259 IGLV5-45A0A087WSX0 123 aa9.57□□□□□ -0.88
VPS29-204ENST00000548259 LINC01549A6NIU2 74 aa9.57□□□□□ -0.88
VPS29-204ENST00000548259 H3BRM9 83 aa9.57□□□□□ -0.88
VPS29-204ENST00000548259 M0R378 163 aa9.57□□□□□ -0.88
VPS29-204ENST00000548259 SPINK1P00995 79 aa9.57□□□□□ -0.88
VPS29-204ENST00000548259 PFN2P35080 140 aa9.57□□□□□ -0.88
VPS29-204ENST00000548259 MRPL18Q9H0U6 180 aaKnown RBP9.57□□□□□ -0.88
VPS29-204ENST00000548259 SPINK8P0C7L1 97 aa9.56□□□□□ -0.88
VPS29-204ENST00000548259 DAND5Q8N907 189 aa9.56□□□□□ -0.88
VPS29-204ENST00000548259 VPREB1P12018 145 aa9.55□□□□□ -0.88
VPS29-204ENST00000548259 SPRR4Q96PI1 79 aa9.55□□□□□ -0.88
VPS29-204ENST00000548259 FAM19A2Q8N3H0 131 aa9.54□□□□□ -0.88
VPS29-204ENST00000548259 Q8NBF4 154 aa9.54□□□□□ -0.88
VPS29-204ENST00000548259 COX17Q14061 63 aa9.53□□□□□ -0.88
VPS29-204ENST00000548259 SND1-IT1Q9HBX3 110 aa9.53□□□□□ -0.88
VPS29-204ENST00000548259 RAB14P61106 215 aa9.52□□□□□ -0.89
VPS29-204ENST00000548259 KRTAP4-1Q9BYQ7 146 aa9.51□□□□□ -0.89
VPS29-204ENST00000548259 CST9LQ9H4G1 147 aa9.51□□□□□ -0.89
VPS29-204ENST00000548259 ERG28Q9UKR5 140 aa9.51□□□□□ -0.89
VPS29-204ENST00000548259 MT-ND4LP03901 98 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms