RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 Q6ZN92 141 aa6.52□□□□□ -1.37
CD44-227ENST00000528086 GAGE2DQ9UEU5 116 aa6.52□□□□□ -1.37
CD44-227ENST00000528086 PKIGQ9Y2B9 76 aa6.52□□□□□ -1.37
CD44-227ENST00000528086 TRBV30A0A0K0K1B3 111 aa6.51□□□□□ -1.37
CD44-227ENST00000528086 MT-ND6P03923 174 aa6.51□□□□□ -1.37
CD44-227ENST00000528086 UBR4Q5T4S7 5183 aa6.51□□□□□ -1.37
CD44-227ENST00000528086 NDUFC2-KCTD14E9PQ53 114 aa6.5□□□□□ -1.37
CD44-227ENST00000528086 PMCHL1Q16048 86 aa6.5□□□□□ -1.37
CD44-227ENST00000528086 COX19Q49B96 90 aa6.5□□□□□ -1.37
CD44-227ENST00000528086 SERTAD4-AS1Q5TG53 156 aa6.5□□□□□ -1.37
CD44-227ENST00000528086 SPINK6Q6UWN8 80 aa6.5□□□□□ -1.37
CD44-227ENST00000528086 FAM19A5Q7Z5A7 132 aaPredicted RBP6.5□□□□□ -1.37
CD44-227ENST00000528086 Q8IZM0 81 aa6.5□□□□□ -1.37
CD44-227ENST00000528086 TINCRA0A1B0GVN0 87 aa6.49□□□□□ -1.37
CD44-227ENST00000528086 HERVK_113P63121 156 aa6.49□□□□□ -1.37
CD44-227ENST00000528086 PDZD11Q5EBL8 140 aa6.49□□□□□ -1.37
CD44-227ENST00000528086 TOMM7Q9P0U1 55 aa6.49□□□□□ -1.37
CD44-227ENST00000528086 TRAPPC1Q9Y5R8 145 aa6.49□□□□□ -1.37
CD44-227ENST00000528086 FA2HQ7L5A8 372 aa6.48□□□□□ -1.37
CD44-227ENST00000528086 LINC00469Q8N7U9 141 aa6.48□□□□□ -1.37
CD44-227ENST00000528086 LRP2P98164 4655 aa6.47□□□□□ -1.37
CD44-227ENST00000528086 SPINK8P0C7L1 97 aa6.47□□□□□ -1.37
CD44-227ENST00000528086 LINC00614P0C842 121 aa6.47□□□□□ -1.37
CD44-227ENST00000528086 G0S2P27469 103 aa6.47□□□□□ -1.37
CD44-227ENST00000528086 PMVKQ15126 192 aa6.47□□□□□ -1.37
CD44-227ENST00000528086 PAPPA-AS1Q5QFB9 102 aa6.47□□□□□ -1.37
CD44-227ENST00000528086 GEMIN7Q9H840 131 aaKnown RBP6.47□□□□□ -1.37
CD44-227ENST00000528086 XAGE1AQ9HD64 81 aa6.47□□□□□ -1.37
CD44-227ENST00000528086 SNAPINO95295 136 aa6.46□□□□□ -1.38
CD44-227ENST00000528086 IGLV7-43P04211 117 aa6.46□□□□□ -1.38
CD44-227ENST00000528086 IGLC3P0DOY3 106 aa6.46□□□□□ -1.38
CD44-227ENST00000528086 SEC11AP67812 179 aa6.46□□□□□ -1.38
CD44-227ENST00000528086 C6orf226Q5I0X4 101 aa6.46□□□□□ -1.38
CD44-227ENST00000528086 C1orf137Q5JT78 98 aa6.46□□□□□ -1.38
CD44-227ENST00000528086 CBLN2Q8IUK8 224 aa6.46□□□□□ -1.38
CD44-227ENST00000528086 SVBPQ8N300 66 aa6.46□□□□□ -1.38
CD44-227ENST00000528086 PACRGQ96M98 296 aaPredicted RBP6.46□□□□□ -1.38
CD44-227ENST00000528086 IGLV5-39A0A0G2JS06 123 aa6.45□□□□□ -1.38
CD44-227ENST00000528086 F8VRH5 84 aa6.45□□□□□ -1.38
CD44-227ENST00000528086 M0QXV9 152 aa6.45□□□□□ -1.38
CD44-227ENST00000528086 LCE2BO14633 110 aa6.45□□□□□ -1.38
CD44-227ENST00000528086 ZNF22P17026 224 aaPredicted RBP6.45□□□□□ -1.38
CD44-227ENST00000528086 CKS1BP61024 79 aa6.45□□□□□ -1.38
CD44-227ENST00000528086 SLC7A5P1Q8MH63 180 aa6.45□□□□□ -1.38
CD44-227ENST00000528086 COX7B2Q8TF08 81 aa6.45□□□□□ -1.38
CD44-227ENST00000528086 C11orf86A6NJI1 115 aa6.44□□□□□ -1.38
CD44-227ENST00000528086 HBDP02042 147 aa6.44□□□□□ -1.38
CD44-227ENST00000528086 PRSS2P07478 247 aa6.44□□□□□ -1.38
CD44-227ENST00000528086 KRTAP1-4P0C5Y4 121 aa6.44□□□□□ -1.38
CD44-227ENST00000528086 LINC00310P59036 64 aa6.44□□□□□ -1.38
CD44-227ENST00000528086 SMCO4Q9NRQ5 59 aa6.44□□□□□ -1.38
CD44-227ENST00000528086 PLA2G2DQ9UNK4 145 aa6.44□□□□□ -1.38
CD44-227ENST00000528086 C22orf24Q9Y442 160 aa6.44□□□□□ -1.38
CD44-227ENST00000528086 LINC01549A6NIU2 74 aa6.43□□□□□ -1.38
CD44-227ENST00000528086 Q8NDZ9 215 aa6.43□□□□□ -1.38
CD44-227ENST00000528086 LPAP08519 4548 aa6.42□□□□□ -1.38
CD44-227ENST00000528086 CXCL5P42830 114 aa6.41□□□□□ -1.38
CD44-227ENST00000528086 REG3GQ6UW15 175 aa6.41□□□□□ -1.38
CD44-227ENST00000528086 H0Y9J4 135 aa6.4□□□□□ -1.38
CD44-227ENST00000528086 NUPR1O60356 82 aa6.4□□□□□ -1.38
CD44-227ENST00000528086 SCO1O75880 301 aa6.4□□□□□ -1.38
CD44-227ENST00000528086 NDUFA6P56556 154 aa6.4□□□□□ -1.38
CD44-227ENST00000528086 NDUFA5Q16718 116 aa6.4□□□□□ -1.38
CD44-227ENST00000528086 BAGE3Q86Y29 109 aa6.4□□□□□ -1.38
CD44-227ENST00000528086 PRR26Q8N8Z3 221 aa6.4□□□□□ -1.38
CD44-227ENST00000528086 RAB5BP61020 215 aa6.39□□□□□ -1.39
CD44-227ENST00000528086 FAM19A2Q8N3H0 131 aa6.39□□□□□ -1.39
CD44-227ENST00000528086 ZNF625Q96I27 306 aaPredicted RBP6.39□□□□□ -1.39
CD44-227ENST00000528086 LINC00167Q96N53 147 aa6.39□□□□□ -1.39
CD44-227ENST00000528086 IGLV5-37A0A075B6J1 123 aa6.38□□□□□ -1.39
CD44-227ENST00000528086 COLCA2A8K830 154 aa6.38□□□□□ -1.39
CD44-227ENST00000528086 ATP5LO75964 103 aa6.38□□□□□ -1.39
CD44-227ENST00000528086 TRGC2P03986 189 aa6.38□□□□□ -1.39
CD44-227ENST00000528086 UBE2BP63146 152 aa6.38□□□□□ -1.39
CD44-227ENST00000528086 TP73-AS1Q9UF72 201 aa6.38□□□□□ -1.39
CD44-227ENST00000528086 MRPL55Q7Z7F7 128 aaKnown RBP6.37□□□□□ -1.39
CD44-227ENST00000528086 KRTAP13-1Q8IUC0 172 aa6.37□□□□□ -1.39
CD44-227ENST00000528086 DIRC1Q969H9 104 aa6.37□□□□□ -1.39
CD44-227ENST00000528086 CHCHD1Q96BP2 118 aaKnown RBP6.37□□□□□ -1.39
CD44-227ENST00000528086 TRAV12-1A0A0B4J245 112 aa6.36□□□□□ -1.39
CD44-227ENST00000528086 TMEM223A0PJW6 202 aa6.36□□□□□ -1.39
CD44-227ENST00000528086 RPL37AP8A6NKH3 93 aa6.36□□□□□ -1.39
CD44-227ENST00000528086 H3BRM9 83 aa6.36□□□□□ -1.39
CD44-227ENST00000528086 VPREB1P12018 145 aa6.36□□□□□ -1.39
CD44-227ENST00000528086 IFI27L1Q96BM0 104 aa6.36□□□□□ -1.39
CD44-227ENST00000528086 SND1-IT1Q9HBX3 110 aa6.36□□□□□ -1.39
CD44-227ENST00000528086 CHTOPQ9Y3Y2 248 aaKnown RBP6.36□□□□□ -1.39
CD44-227ENST00000528086 GAGE10A6NGK3 116 aa6.35□□□□□ -1.39
CD44-227ENST00000528086 ZNF861PO60384 105 aa6.35□□□□□ -1.39
CD44-227ENST00000528086 SERF1AO75920 110 aa6.35□□□□□ -1.39
CD44-227ENST00000528086 PFN2P35080 140 aa6.35□□□□□ -1.39
CD44-227ENST00000528086 ERG28Q9UKR5 140 aa6.35□□□□□ -1.39
CD44-227ENST00000528086 TMEM170BQ5T4T1 132 aa6.34□□□□□ -1.39
CD44-227ENST00000528086 BCE1O60756 84 aa6.33□□□□□ -1.4
CD44-227ENST00000528086 TSPEAR-AS2P59090 65 aa6.33□□□□□ -1.4
CD44-227ENST00000528086 LBHQ53QV2 105 aaPredicted RBP6.33□□□□□ -1.4
CD44-227ENST00000528086 A0A087X002 238 aa6.32□□□□□ -1.4
CD44-227ENST00000528086 IGLV1-50A0A075B6I6 118 aa6.31□□□□□ -1.4
CD44-227ENST00000528086 TMEM238C9JI98 176 aa6.31□□□□□ -1.4
CD44-227ENST00000528086 HSBP1O75506 76 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms