RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 HERVK_113P63121 156 aa1.86□□□□□ -2.11
MCF2-208ENST00000519895 ARL17AQ8IVW1 177 aa1.86□□□□□ -2.11
MCF2-208ENST00000519895 C9orf163Q8N9P6 203 aa1.86□□□□□ -2.11
MCF2-208ENST00000519895 JPT2Q9H910 190 aa1.86□□□□□ -2.11
MCF2-208ENST00000519895 MRPL35Q9NZE8 188 aaKnown RBP1.86□□□□□ -2.11
MCF2-208ENST00000519895 SELENOKQ9Y6D0 94 aa1.86□□□□□ -2.11
MCF2-208ENST00000519895 IGHV3-64A0A075B6Q5 118 aa1.85□□□□□ -2.11
MCF2-208ENST00000519895 A0A087WX48 190 aa1.85□□□□□ -2.11
MCF2-208ENST00000519895 A0A0J9YY99 117 aa1.85□□□□□ -2.11
MCF2-208ENST00000519895 LINC00587B1AMM8 73 aa1.85□□□□□ -2.11
MCF2-208ENST00000519895 LINC00310P59036 64 aa1.85□□□□□ -2.11
MCF2-208ENST00000519895 REG3AQ06141 175 aa1.85□□□□□ -2.11
MCF2-208ENST00000519895 C2orf66Q6UXQ4 117 aa1.85□□□□□ -2.11
MCF2-208ENST00000519895 WFDC10BQ8IUB3 73 aa1.85□□□□□ -2.11
MCF2-208ENST00000519895 C2orf88Q9BSF0 95 aa1.85□□□□□ -2.11
MCF2-208ENST00000519895 TP73-AS1Q9UF72 201 aa1.85□□□□□ -2.11
MCF2-208ENST00000519895 USH2AO75445 5202 aa1.85□□□□□ -2.11
MCF2-208ENST00000519895 LINC00959A0A1B0GUT2 108 aa1.85□□□□□ -2.11
MCF2-208ENST00000519895 EIF3GO75821 320 aaKnown RBP eCLIP1.85□□□□□ -2.11
MCF2-208ENST00000519895 MGPP08493 103 aa1.85□□□□□ -2.11
MCF2-208ENST00000519895 SNRPCP09234 159 aaKnown RBP1.85□□□□□ -2.11
MCF2-208ENST00000519895 CFC1BP0CG36 223 aa1.85□□□□□ -2.11
MCF2-208ENST00000519895 HTN1P15515 57 aa1.85□□□□□ -2.11
MCF2-208ENST00000519895 IFI27P40305 119 aaPredicted RBP1.85□□□□□ -2.11
MCF2-208ENST00000519895 COX17Q14061 63 aa1.85□□□□□ -2.11
MCF2-208ENST00000519895 Q8IZM0 81 aa1.85□□□□□ -2.11
MCF2-208ENST00000519895 FAM104AQ969W3 186 aa1.85□□□□□ -2.11
MCF2-208ENST00000519895 KRTAP1-5Q9BYS1 174 aa1.85□□□□□ -2.11
MCF2-208ENST00000519895 TMSB15BA0A087X1C1 80 aa1.84□□□□□ -2.11
MCF2-208ENST00000519895 A6NDN8 102 aa1.84□□□□□ -2.11
MCF2-208ENST00000519895 D6R8Y8 96 aa1.84□□□□□ -2.11
MCF2-208ENST00000519895 NPYP01303 97 aa1.84□□□□□ -2.11
MCF2-208ENST00000519895 PRM2P04554 102 aa1.84□□□□□ -2.11
MCF2-208ENST00000519895 HTN3P15516 51 aa1.84□□□□□ -2.11
MCF2-208ENST00000519895 UBE2D1P51668 147 aa1.84□□□□□ -2.11
MCF2-208ENST00000519895 KRTAP5-7Q6L8G8 165 aa1.84□□□□□ -2.11
MCF2-208ENST00000519895 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.84□□□□□ -2.11
MCF2-208ENST00000519895 TRAV16A0A0A6YYK6 109 aaPredicted RBP1.84□□□□□ -2.11
MCF2-208ENST00000519895 IGHV3OR16-9A0A0B4J2B5 98 aa1.84□□□□□ -2.11
MCF2-208ENST00000519895 IGLV5-39A0A0G2JS06 123 aa1.84□□□□□ -2.11
MCF2-208ENST00000519895 A0A1B0GV50 99 aa1.84□□□□□ -2.11
MCF2-208ENST00000519895 KRTAP1-4P0C5Y4 121 aa1.84□□□□□ -2.11
MCF2-208ENST00000519895 RAB5AP20339 215 aa1.84□□□□□ -2.11
MCF2-208ENST00000519895 NMUP48645 174 aa1.84□□□□□ -2.11
MCF2-208ENST00000519895 TAL2Q16559 108 aa1.84□□□□□ -2.11
MCF2-208ENST00000519895 FAM74A4Q5TZK3 123 aa1.84□□□□□ -2.11
MCF2-208ENST00000519895 Q6ZN92 141 aa1.84□□□□□ -2.11
MCF2-208ENST00000519895 CHCHD5Q9BSY4 110 aa1.84□□□□□ -2.11
MCF2-208ENST00000519895 PLAC8Q9NZF1 115 aa1.84□□□□□ -2.11
MCF2-208ENST00000519895 SYNE2Q8WXH0 6885 aaKnown RBP1.84□□□□□ -2.11
MCF2-208ENST00000519895 IGLV4-69A0A075B6H9 119 aa1.84□□□□□ -2.12
MCF2-208ENST00000519895 IGLV4-3A0A075B6K6 122 aa1.84□□□□□ -2.12
MCF2-208ENST00000519895 A0A0J9YXY3 114 aa1.84□□□□□ -2.12
MCF2-208ENST00000519895 HBDP02042 147 aa1.84□□□□□ -2.12
MCF2-208ENST00000519895 MPV17L2Q567V2 206 aa1.84□□□□□ -2.12
MCF2-208ENST00000519895 AMMECR1LQ6DCA0 310 aa1.84□□□□□ -2.12
MCF2-208ENST00000519895 BAGE3Q86Y29 109 aa1.84□□□□□ -2.12
MCF2-208ENST00000519895 TRAPPC1Q9Y5R8 145 aa1.84□□□□□ -2.12
MCF2-208ENST00000519895 IGLV5-52A0A0A0MRZ9 124 aa1.83□□□□□ -2.12
MCF2-208ENST00000519895 C11orf86A6NJI1 115 aa1.83□□□□□ -2.12
MCF2-208ENST00000519895 COLCA2A8K830 154 aa1.83□□□□□ -2.12
MCF2-208ENST00000519895 H3BRM9 83 aa1.83□□□□□ -2.12
MCF2-208ENST00000519895 NUPR1O60356 82 aa1.83□□□□□ -2.12
MCF2-208ENST00000519895 PRSS2P07478 247 aa1.83□□□□□ -2.12
MCF2-208ENST00000519895 LINC00614P0C842 121 aa1.83□□□□□ -2.12
MCF2-208ENST00000519895 PMVKQ15126 192 aa1.83□□□□□ -2.12
MCF2-208ENST00000519895 TEX43Q6ZNM6 134 aa1.83□□□□□ -2.12
MCF2-208ENST00000519895 LINC00173Q6ZV60 143 aa1.83□□□□□ -2.12
MCF2-208ENST00000519895 FAM19A1Q7Z5A9 133 aa1.83□□□□□ -2.12
MCF2-208ENST00000519895 C18orf32Q8TCD1 76 aa1.83□□□□□ -2.12
MCF2-208ENST00000519895 RPL39LQ96EH5 51 aaKnown RBP1.83□□□□□ -2.12
MCF2-208ENST00000519895 RPS10P5Q9NQ39 176 aa1.83□□□□□ -2.12
MCF2-208ENST00000519895 TGIF2-C20orf24A0A0A6YYL0 155 aa1.83□□□□□ -2.12
MCF2-208ENST00000519895 LOC107984640A0A0U1RRK4 108 aa1.83□□□□□ -2.12
MCF2-208ENST00000519895 TMEM238C9JI98 176 aa1.83□□□□□ -2.12
MCF2-208ENST00000519895 COX7A2LO14548 114 aa1.83□□□□□ -2.12
MCF2-208ENST00000519895 TIMM17BO60830 172 aa1.83□□□□□ -2.12
MCF2-208ENST00000519895 RPS10P46783 165 aaKnown RBP1.83□□□□□ -2.12
MCF2-208ENST00000519895 LINC01545Q5VT33 79 aa1.83□□□□□ -2.12
MCF2-208ENST00000519895 CHCHD10Q8WYQ3 142 aaPredicted RBP1.83□□□□□ -2.12
MCF2-208ENST00000519895 HSPB8Q9UJY1 196 aa1.83□□□□□ -2.12
MCF2-208ENST00000519895 S100A12P80511 92 aa1.83□□□□□ -2.12
MCF2-208ENST00000519895 C15orf56Q8N910 161 aa1.83□□□□□ -2.12
MCF2-208ENST00000519895 Q9UF83 564 aa1.83□□□□□ -2.12
MCF2-208ENST00000519895 IGLV4-60A0A075B6I1 120 aa1.82□□□□□ -2.12
MCF2-208ENST00000519895 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP1.82□□□□□ -2.12
MCF2-208ENST00000519895 ANGP03950 147 aaKnown RBP1.82□□□□□ -2.12
MCF2-208ENST00000519895 KIAA0087Q14695 138 aa1.82□□□□□ -2.12
MCF2-208ENST00000519895 MRPL54Q6P161 138 aaKnown RBP1.82□□□□□ -2.12
MCF2-208ENST00000519895 SDIM1Q6ZPB5 146 aa1.82□□□□□ -2.12
MCF2-208ENST00000519895 Q6ZRU5 148 aa1.82□□□□□ -2.12
MCF2-208ENST00000519895 SPACA4Q8TDM5 124 aa1.82□□□□□ -2.12
MCF2-208ENST00000519895 CST9LQ9H4G1 147 aa1.82□□□□□ -2.12
MCF2-208ENST00000519895 PRSS1P07477 247 aa1.82□□□□□ -2.12
MCF2-208ENST00000519895 PLNP26678 52 aa1.82□□□□□ -2.12
MCF2-208ENST00000519895 Q6ZVH6 145 aa1.82□□□□□ -2.12
MCF2-208ENST00000519895 CBLN2Q8IUK8 224 aa1.82□□□□□ -2.12
MCF2-208ENST00000519895 LINC00269Q8N2A0 174 aa1.82□□□□□ -2.12
MCF2-208ENST00000519895 PRSS3P2Q8NHM4 247 aa1.82□□□□□ -2.12
MCF2-208ENST00000519895 KLK12Q9UKR0 248 aa1.82□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms