RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 C9orf163Q8N9P6 203 aa9.69□□□□□ -0.86
NUP54-213ENST00000513352 F8WDY8 70 aa9.68□□□□□ -0.86
NUP54-213ENST00000513352 KRTAP10-1P60331 282 aa9.68□□□□□ -0.86
NUP54-213ENST00000513352 IGLV5-39A0A0G2JS06 123 aa9.67□□□□□ -0.86
NUP54-213ENST00000513352 C10orf25Q5T742 122 aa9.67□□□□□ -0.86
NUP54-213ENST00000513352 PKD1P98161 4303 aa9.67□□□□□ -0.86
NUP54-213ENST00000513352 CXCL5P42830 114 aa9.66□□□□□ -0.86
NUP54-213ENST00000513352 HECTD4Q9Y4D8 3996 aa9.66□□□□□ -0.86
NUP54-213ENST00000513352 ATOH7Q8N100 152 aa9.65□□□□□ -0.86
NUP54-213ENST00000513352 C6orf48Q9UBA6 75 aa9.65□□□□□ -0.86
NUP54-213ENST00000513352 PKIGQ9Y2B9 76 aa9.65□□□□□ -0.86
NUP54-213ENST00000513352 DNAH11Q96DT5 4516 aa9.64□□□□□ -0.87
NUP54-213ENST00000513352 RPL18AQ02543 176 aaKnown RBP9.64□□□□□ -0.87
NUP54-213ENST00000513352 PKHD1P08F94 4074 aa9.63□□□□□ -0.87
NUP54-213ENST00000513352 TRBV30A0A0K0K1B3 111 aa9.63□□□□□ -0.87
NUP54-213ENST00000513352 LOC107984640A0A0U1RRK4 108 aa9.63□□□□□ -0.87
NUP54-213ENST00000513352 LEPROTO15243 131 aa9.63□□□□□ -0.87
NUP54-213ENST00000513352 RNF151Q2KHN1 245 aa9.63□□□□□ -0.87
NUP54-213ENST00000513352 SDIM1Q6ZPB5 146 aa9.63□□□□□ -0.87
NUP54-213ENST00000513352 PLEKHB2Q96CS7 222 aa9.63□□□□□ -0.87
NUP54-213ENST00000513352 IGKV2-24A0A0C4DH68 120 aa9.62□□□□□ -0.87
NUP54-213ENST00000513352 SCGB1D1O95968 90 aa9.62□□□□□ -0.87
NUP54-213ENST00000513352 AKR1D1P51857 326 aa9.62□□□□□ -0.87
NUP54-213ENST00000513352 C9orf116Q5BN46 136 aaPredicted RBP9.62□□□□□ -0.87
NUP54-213ENST00000513352 STPG4Q8N801 248 aa9.62□□□□□ -0.87
NUP54-213ENST00000513352 DPH3Q96FX2 82 aa9.62□□□□□ -0.87
NUP54-213ENST00000513352 LGALS3P17931 250 aaKnown RBP9.61□□□□□ -0.87
NUP54-213ENST00000513352 GAGE2BQ13066 116 aa9.61□□□□□ -0.87
NUP54-213ENST00000513352 ZNF625Q96I27 306 aaPredicted RBP9.61□□□□□ -0.87
NUP54-213ENST00000513352 J3QQQ9 107 aa9.6□□□□□ -0.87
NUP54-213ENST00000513352 CHTF8P0CG12 524 aa9.6□□□□□ -0.87
NUP54-213ENST00000513352 HAMPP81172 84 aa9.6□□□□□ -0.87
NUP54-213ENST00000513352 FAM30AQ9NZY2 134 aa9.6□□□□□ -0.87
NUP54-213ENST00000513352 NDUFA12Q9UI09 145 aa9.6□□□□□ -0.87
NUP54-213ENST00000513352 A0A096LNI7 61 aa9.59□□□□□ -0.87
NUP54-213ENST00000513352 E9PLD3 99 aa9.59□□□□□ -0.87
NUP54-213ENST00000513352 TSPEAR-AS2P59090 65 aa9.59□□□□□ -0.87
NUP54-213ENST00000513352 MAJINQ3KP22 176 aa9.59□□□□□ -0.87
NUP54-213ENST00000513352 SFTA2Q6UW10 78 aa9.59□□□□□ -0.87
NUP54-213ENST00000513352 EPPK1P58107 5090 aaKnown RBP9.59□□□□□ -0.87
NUP54-213ENST00000513352 GAGE2EQ4V326 116 aa9.58□□□□□ -0.88
NUP54-213ENST00000513352 GAGE2DQ9UEU5 116 aa9.58□□□□□ -0.88
NUP54-213ENST00000513352 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.58□□□□□ -0.88
NUP54-213ENST00000513352 MYMXA0A1B0GTQ4 84 aa9.57□□□□□ -0.88
NUP54-213ENST00000513352 HSBP1L1C9JCN9 74 aa9.57□□□□□ -0.88
NUP54-213ENST00000513352 NDUFC2-KCTD14E9PQ53 114 aa9.57□□□□□ -0.88
NUP54-213ENST00000513352 PFN2P35080 140 aa9.57□□□□□ -0.88
NUP54-213ENST00000513352 PTTG1IPP53801 180 aa9.57□□□□□ -0.88
NUP54-213ENST00000513352 PANO1I0J062 215 aa9.56□□□□□ -0.88
NUP54-213ENST00000513352 MEIG1Q5JSS6 88 aa9.56□□□□□ -0.88
NUP54-213ENST00000513352 Q6ZRP5 223 aa9.56□□□□□ -0.88
NUP54-213ENST00000513352 Q6ZSA8 131 aa9.56□□□□□ -0.88
NUP54-213ENST00000513352 LINC00474Q9P2X8 69 aa9.56□□□□□ -0.88
NUP54-213ENST00000513352 ERG28Q9UKR5 140 aa9.56□□□□□ -0.88
NUP54-213ENST00000513352 TLX1NBP0CAT3 122 aa9.55□□□□□ -0.88
NUP54-213ENST00000513352 NMUP48645 174 aa9.55□□□□□ -0.88
NUP54-213ENST00000513352 HERV-K104P63124 156 aa9.55□□□□□ -0.88
NUP54-213ENST00000513352 SPACA4Q8TDM5 124 aa9.55□□□□□ -0.88
NUP54-213ENST00000513352 IGKV2D-26A0A0A0MRZ7 120 aa9.54□□□□□ -0.88
NUP54-213ENST00000513352 A0A0U1RRA0 63 aa9.54□□□□□ -0.88
NUP54-213ENST00000513352 LINC00158P58513 81 aa9.54□□□□□ -0.88
NUP54-213ENST00000513352 ANKRD39Q53RE8 183 aa9.54□□□□□ -0.88
NUP54-213ENST00000513352 DNAH5Q8TE73 4624 aa9.53□□□□□ -0.88
NUP54-213ENST00000513352 SCXQ7RTU7 201 aa9.53□□□□□ -0.88
NUP54-213ENST00000513352 ZNF815PA8K554 130 aa9.52□□□□□ -0.89
NUP54-213ENST00000513352 CDK2AP2O75956 126 aa9.52□□□□□ -0.89
NUP54-213ENST00000513352 CIRBP-AS1Q8TBR5 109 aa9.52□□□□□ -0.89
NUP54-213ENST00000513352 XAGE1AQ9HD64 81 aa9.52□□□□□ -0.89
NUP54-213ENST00000513352 DYNC1H1Q14204 4646 aaKnown RBP9.51□□□□□ -0.89
NUP54-213ENST00000513352 A0A087WYN8 130 aa9.51□□□□□ -0.89
NUP54-213ENST00000513352 J3QL48 77 aa9.51□□□□□ -0.89
NUP54-213ENST00000513352 SMIM13P0DJ93 91 aa9.51□□□□□ -0.89
NUP54-213ENST00000513352 XGP55808 180 aa9.51□□□□□ -0.89
NUP54-213ENST00000513352 CIRBPQ14011 172 aaKnown RBP9.51□□□□□ -0.89
NUP54-213ENST00000513352 TTTY13Q9BZ97 58 aa9.51□□□□□ -0.89
NUP54-213ENST00000513352 COX17Q14061 63 aa9.5□□□□□ -0.89
NUP54-213ENST00000513352 JOSD1Q15040 202 aaPredicted RBP9.5□□□□□ -0.89
NUP54-213ENST00000513352 LINC00587B1AMM8 73 aa9.49□□□□□ -0.89
NUP54-213ENST00000513352 FAM19A5Q7Z5A7 132 aaPredicted RBP9.49□□□□□ -0.89
NUP54-213ENST00000513352 C9orf129Q5T035 196 aaKnown RBP9.48□□□□□ -0.89
NUP54-213ENST00000513352 LRP1BQ9NZR2 4599 aa9.48□□□□□ -0.89
NUP54-213ENST00000513352 A0A0J9YXY3 114 aa9.47□□□□□ -0.89
NUP54-213ENST00000513352 A0A1W2PNN7 141 aa9.47□□□□□ -0.89
NUP54-213ENST00000513352 FAM168BA1KXE4 195 aa9.47□□□□□ -0.89
NUP54-213ENST00000513352 SMR3BP02814 79 aaPredicted RBP9.47□□□□□ -0.89
NUP54-213ENST00000513352 SCGB1D4Q6XE38 83 aa9.47□□□□□ -0.89
NUP54-213ENST00000513352 PCP2Q8IVA1 136 aa9.47□□□□□ -0.89
NUP54-213ENST00000513352 VAMP8Q9BV40 100 aa9.47□□□□□ -0.89
NUP54-213ENST00000513352 SND1-IT1Q9HBX3 110 aa9.47□□□□□ -0.89
NUP54-213ENST00000513352 PLAC8Q9NZF1 115 aa9.47□□□□□ -0.89
NUP54-213ENST00000513352 PYY3Q5JQD4 70 aa9.46□□□□□ -0.9
NUP54-213ENST00000513352 MIR7-3HGQ8N6C7 128 aa9.46□□□□□ -0.9
NUP54-213ENST00000513352 PAM16Q9Y3D7 125 aa9.46□□□□□ -0.9
NUP54-213ENST00000513352 BIRC6Q9NR09 4857 aa9.45□□□□□ -0.9
NUP54-213ENST00000513352 SPATA45Q537H7 98 aa9.45□□□□□ -0.9
NUP54-213ENST00000513352 DAND5Q8N907 189 aa9.45□□□□□ -0.9
NUP54-213ENST00000513352 M0QXV9 152 aa9.43□□□□□ -0.9
NUP54-213ENST00000513352 SERTAD4-AS1Q5TG53 156 aa9.43□□□□□ -0.9
NUP54-213ENST00000513352 NPC2P61916 151 aa9.42□□□□□ -0.9
NUP54-213ENST00000513352 LINC00528Q8N1L1 170 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms