RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 CRYBG1Q9Y4K1 1723 aa-0.28□□□□□ -2.45
HMGB1P28-201ENST00000507778 DNAH3Q8TD57 4116 aa-0.28□□□□□ -2.45
HMGB1P28-201ENST00000507778 DNAH6Q9C0G6 4158 aa-0.28□□□□□ -2.45
HMGB1P28-201ENST00000507778 POLA1P09884 1462 aaPredicted RBP-0.29□□□□□ -2.46
HMGB1P28-201ENST00000507778 C1orf167Q5SNV9 1468 aa-0.29□□□□□ -2.46
HMGB1P28-201ENST00000507778 MAGI1Q96QZ7 1491 aaPredicted RBP-0.29□□□□□ -2.46
HMGB1P28-201ENST00000507778 LYSTQ99698 3801 aa-0.29□□□□□ -2.46
HMGB1P28-201ENST00000507778 FAT1Q14517 4588 aa-0.29□□□□□ -2.46
HMGB1P28-201ENST00000507778 USH2AO75445 5202 aa-0.29□□□□□ -2.46
HMGB1P28-201ENST00000507778 VPS13BQ7Z7G8 4022 aa-0.29□□□□□ -2.46
HMGB1P28-201ENST00000507778 TIAM2Q8IVF5 1701 aa-0.29□□□□□ -2.46
HMGB1P28-201ENST00000507778 PKD1P98161 4303 aa-0.29□□□□□ -2.46
HMGB1P28-201ENST00000507778 TNRC6CQ9HCJ0 1690 aaKnown RBP-0.29□□□□□ -2.46
HMGB1P28-201ENST00000507778 SYS1-DBNDD2H3BUS1 97 aa-0.29□□□□□ -2.46
HMGB1P28-201ENST00000507778 LELP1Q5T871 98 aa-0.29□□□□□ -2.46
HMGB1P28-201ENST00000507778 C9orf153Q5TBE3 101 aa-0.29□□□□□ -2.46
HMGB1P28-201ENST00000507778 FAM223AQ8IWN6 122 aa-0.29□□□□□ -2.46
HMGB1P28-201ENST00000507778 FDCSPQ8NFU4 85 aa-0.29□□□□□ -2.46
HMGB1P28-201ENST00000507778 LINC00474Q9P2X8 69 aa-0.29□□□□□ -2.46
HMGB1P28-201ENST00000507778 PCNX1Q96RV3 2341 aa-0.29□□□□□ -2.46
HMGB1P28-201ENST00000507778 ADAMTS12P58397 1594 aa-0.29□□□□□ -2.46
HMGB1P28-201ENST00000507778 DIP2CQ9Y2E4 1556 aa-0.29□□□□□ -2.46
HMGB1P28-201ENST00000507778 SLIT1O75093 1534 aa-0.29□□□□□ -2.46
HMGB1P28-201ENST00000507778 MXRA5Q9NR99 2828 aa-0.29□□□□□ -2.46
HMGB1P28-201ENST00000507778 PLEKHH2Q8IVE3 1493 aa-0.29□□□□□ -2.46
HMGB1P28-201ENST00000507778 CUBNO60494 3623 aa-0.3□□□□□ -2.46
HMGB1P28-201ENST00000507778 PREX1Q8TCU6 1659 aa-0.3□□□□□ -2.46
HMGB1P28-201ENST00000507778 NRKQ7Z2Y5 1582 aa-0.3□□□□□ -2.46
HMGB1P28-201ENST00000507778 SPRR2EP22531 72 aa-0.3□□□□□ -2.46
HMGB1P28-201ENST00000507778 SPRR2AP35326 72 aa-0.3□□□□□ -2.46
HMGB1P28-201ENST00000507778 DEFB135Q30KP9 77 aa-0.3□□□□□ -2.46
HMGB1P28-201ENST00000507778 DEFB112Q30KQ8 113 aa-0.3□□□□□ -2.46
HMGB1P28-201ENST00000507778 H1FX-AS1Q4G0G2 97 aa-0.3□□□□□ -2.46
HMGB1P28-201ENST00000507778 C10orf113Q5VZT2 155 aa-0.3□□□□□ -2.46
HMGB1P28-201ENST00000507778 UQCR10Q9UDW1 63 aa-0.3□□□□□ -2.46
HMGB1P28-201ENST00000507778 NBASA2RRP1 2371 aa-0.3□□□□□ -2.46
HMGB1P28-201ENST00000507778 PKHD1L1Q86WI1 4243 aa-0.3□□□□□ -2.46
HMGB1P28-201ENST00000507778 ADGRL2O95490 1459 aa-0.3□□□□□ -2.46
HMGB1P28-201ENST00000507778 LRRC37AA6NMS7 1700 aa-0.3□□□□□ -2.46
HMGB1P28-201ENST00000507778 POLR1AO95602 1720 aaPredicted RBP-0.3□□□□□ -2.46
HMGB1P28-201ENST00000507778 RGPD1P0DJD0 1748 aa-0.3□□□□□ -2.46
HMGB1P28-201ENST00000507778 NBPF19A0A087WUL8 3843 aa-0.3□□□□□ -2.46
HMGB1P28-201ENST00000507778 HIVEP1P15822 2718 aa-0.3□□□□□ -2.46
HMGB1P28-201ENST00000507778 MYH4Q9Y623 1939 aa-0.3□□□□□ -2.46
HMGB1P28-201ENST00000507778 UBR4Q5T4S7 5183 aa-0.31□□□□□ -2.46
HMGB1P28-201ENST00000507778 PTPN23Q9H3S7 1636 aa-0.31□□□□□ -2.46
HMGB1P28-201ENST00000507778 ANKRD36CQ5JPF3 1778 aa-0.31□□□□□ -2.46
HMGB1P28-201ENST00000507778 A0A087WVE0 104 aa-0.31□□□□□ -2.46
HMGB1P28-201ENST00000507778 TRBV7-4A0A0J9YYF1 115 aa-0.31□□□□□ -2.46
HMGB1P28-201ENST00000507778 UBE2L5PA0A1B0GUS4 154 aa-0.31□□□□□ -2.46
HMGB1P28-201ENST00000507778 FAM223BA6NKX1 122 aa-0.31□□□□□ -2.46
HMGB1P28-201ENST00000507778 CHKB-CPT1BH3BT56 60 aa-0.31□□□□□ -2.46
HMGB1P28-201ENST00000507778 SNAPC5O75971 98 aa-0.31□□□□□ -2.46
HMGB1P28-201ENST00000507778 IGLC1P0CG04 106 aa-0.31□□□□□ -2.46
HMGB1P28-201ENST00000507778 ASIPP42127 132 aa-0.31□□□□□ -2.46
HMGB1P28-201ENST00000507778 MT4P47944 62 aa-0.31□□□□□ -2.46
HMGB1P28-201ENST00000507778 UBE2L3P68036 154 aaKnown RBP-0.31□□□□□ -2.46
HMGB1P28-201ENST00000507778 DEFB123Q8N688 67 aa-0.31□□□□□ -2.46
HMGB1P28-201ENST00000507778 LINC01600Q96MT4 127 aa-0.31□□□□□ -2.46
HMGB1P28-201ENST00000507778 HTTP42858 3142 aa-0.31□□□□□ -2.46
HMGB1P28-201ENST00000507778 NKTRP30414 1462 aaKnown RBP-0.31□□□□□ -2.46
HMGB1P28-201ENST00000507778 SMG6Q86US8 1419 aaKnown RBP-0.31□□□□□ -2.46
HMGB1P28-201ENST00000507778 ALKQ9UM73 1620 aa-0.31□□□□□ -2.46
HMGB1P28-201ENST00000507778 VPS13DQ5THJ4 4388 aa-0.31□□□□□ -2.46
HMGB1P28-201ENST00000507778 AKAP12Q02952 1782 aa-0.32□□□□□ -2.46
HMGB1P28-201ENST00000507778 CHD8Q9HCK8 2581 aa-0.32□□□□□ -2.46
HMGB1P28-201ENST00000507778 RYR1P21817 5038 aa-0.32□□□□□ -2.46
HMGB1P28-201ENST00000507778 AKAP9Q99996 3911 aa-0.32□□□□□ -2.46
HMGB1P28-201ENST00000507778 MUC17Q685J3 4493 aa-0.32□□□□□ -2.46
HMGB1P28-201ENST00000507778 CLTCQ00610 1675 aaKnown RBP-0.32□□□□□ -2.46
HMGB1P28-201ENST00000507778 MYOM2P54296 1465 aa-0.32□□□□□ -2.46
HMGB1P28-201ENST00000507778 EFCAB10A6NFE3 127 aa-0.32□□□□□ -2.46
HMGB1P28-201ENST00000507778 CPSF4LA6NMK7 179 aaKnown RBP-0.32□□□□□ -2.46
HMGB1P28-201ENST00000507778 MGPP08493 103 aa-0.32□□□□□ -2.46
HMGB1P28-201ENST00000507778 UBA52P62987 128 aaKnown RBP-0.32□□□□□ -2.46
HMGB1P28-201ENST00000507778 HSD52Q0P140 79 aa-0.32□□□□□ -2.46
HMGB1P28-201ENST00000507778 ARL2-SNX15V9GYD0 113 aa-0.32□□□□□ -2.46
HMGB1P28-201ENST00000507778 APOBP04114 4563 aaKnown RBP-0.32□□□□□ -2.46
HMGB1P28-201ENST00000507778 NESP48681 1621 aa-0.32□□□□□ -2.46
HMGB1P28-201ENST00000507778 DNAH9Q9NYC9 4486 aa-0.32□□□□□ -2.46
HMGB1P28-201ENST00000507778 REV3LO60673 3130 aa-0.32□□□□□ -2.46
HMGB1P28-201ENST00000507778 LTN1O94822 1766 aa-0.32□□□□□ -2.46
HMGB1P28-201ENST00000507778 KNL1Q8NG31 2342 aa-0.32□□□□□ -2.46
HMGB1P28-201ENST00000507778 SETBP1Q9Y6X0 1596 aa-0.32□□□□□ -2.46
HMGB1P28-201ENST00000507778 ANKRD26Q9UPS8 1709 aa-0.33□□□□□ -2.46
HMGB1P28-201ENST00000507778 ANK3Q12955 4377 aaKnown RBP-0.33□□□□□ -2.46
HMGB1P28-201ENST00000507778 ZNF831Q5JPB2 1677 aa-0.33□□□□□ -2.46
HMGB1P28-201ENST00000507778 TNRC18O15417 2968 aaPredicted RBP-0.33□□□□□ -2.46
HMGB1P28-201ENST00000507778 ATP5EP56381 51 aaPredicted RBP-0.33□□□□□ -2.46
HMGB1P28-201ENST00000507778 SEC11AP67812 179 aa-0.33□□□□□ -2.46
HMGB1P28-201ENST00000507778 Q0VG73 95 aa-0.33□□□□□ -2.46
HMGB1P28-201ENST00000507778 MANBALQ9NQG1 85 aa-0.33□□□□□ -2.46
HMGB1P28-201ENST00000507778 FAIMQ9NVQ4 179 aa-0.33□□□□□ -2.46
HMGB1P28-201ENST00000507778 HECTD1Q9ULT8 2610 aa-0.33□□□□□ -2.46
HMGB1P28-201ENST00000507778 SCAPERQ9BY12 1400 aa-0.33□□□□□ -2.46
HMGB1P28-201ENST00000507778 EIF4G3O43432 1585 aaKnown RBP-0.33□□□□□ -2.46
HMGB1P28-201ENST00000507778 DOT1LQ8TEK3 1739 aa-0.33□□□□□ -2.46
HMGB1P28-201ENST00000507778 ARHGAP5Q13017 1502 aa-0.33□□□□□ -2.46
HMGB1P28-201ENST00000507778 DNAH11Q96DT5 4516 aa-0.34□□□□□ -2.46
HMGB1P28-201ENST00000507778 RYR2Q92736 4967 aa-0.34□□□□□ -2.46
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms