RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-223ENST00000494123 C2orf82Q6UX34 121 aa9.42□□□□□ -0.9
BRCA1-223ENST00000494123 HERVK_113P61574 105 aa9.42□□□□□ -0.9
BRCA1-223ENST00000494123 UNQ6190/PRO20217Q6UXQ8 127 aa9.42□□□□□ -0.9
BRCA1-223ENST00000494123 KRTAP10-1P60331 282 aa9.4□□□□□ -0.9
BRCA1-223ENST00000494123 C10orf25Q5T742 122 aa9.4□□□□□ -0.9
BRCA1-223ENST00000494123 PKIGQ9Y2B9 76 aa9.4□□□□□ -0.9
BRCA1-223ENST00000494123 EPPK1P58107 5090 aaKnown RBP9.39□□□□□ -0.91
BRCA1-223ENST00000494123 AKR1D1P51857 326 aa9.39□□□□□ -0.91
BRCA1-223ENST00000494123 TRBV30A0A0K0K1B3 111 aa9.38□□□□□ -0.91
BRCA1-223ENST00000494123 RNF151Q2KHN1 245 aa9.38□□□□□ -0.91
BRCA1-223ENST00000494123 C6orf48Q9UBA6 75 aa9.38□□□□□ -0.91
BRCA1-223ENST00000494123 PKHD1P08F94 4074 aa9.38□□□□□ -0.91
BRCA1-223ENST00000494123 SDIM1Q6ZPB5 146 aa9.38□□□□□ -0.91
BRCA1-223ENST00000494123 LOC107984640A0A0U1RRK4 108 aa9.37□□□□□ -0.91
BRCA1-223ENST00000494123 LEPROTO15243 131 aa9.36□□□□□ -0.91
BRCA1-223ENST00000494123 SFTA2Q6UW10 78 aa9.36□□□□□ -0.91
BRCA1-223ENST00000494123 ATOH7Q8N100 152 aa9.36□□□□□ -0.91
BRCA1-223ENST00000494123 PLEKHB2Q96CS7 222 aa9.36□□□□□ -0.91
BRCA1-223ENST00000494123 DNAH5Q8TE73 4624 aa9.35□□□□□ -0.91
BRCA1-223ENST00000494123 SCGB1D1O95968 90 aa9.35□□□□□ -0.91
BRCA1-223ENST00000494123 RPL18AQ02543 176 aaKnown RBP9.35□□□□□ -0.91
BRCA1-223ENST00000494123 C9orf116Q5BN46 136 aaPredicted RBP9.34□□□□□ -0.91
BRCA1-223ENST00000494123 STPG4Q8N801 248 aa9.34□□□□□ -0.91
BRCA1-223ENST00000494123 IGKV2-24A0A0C4DH68 120 aa9.34□□□□□ -0.91
BRCA1-223ENST00000494123 E9PLD3 99 aa9.34□□□□□ -0.91
BRCA1-223ENST00000494123 LGALS3P17931 250 aaKnown RBP9.34□□□□□ -0.91
BRCA1-223ENST00000494123 GAGE2BQ13066 116 aa9.34□□□□□ -0.91
BRCA1-223ENST00000494123 A0A096LNI7 61 aa9.33□□□□□ -0.92
BRCA1-223ENST00000494123 J3QQQ9 107 aa9.33□□□□□ -0.92
BRCA1-223ENST00000494123 DPH3Q96FX2 82 aa9.33□□□□□ -0.92
BRCA1-223ENST00000494123 TLX1NBP0CAT3 122 aa9.32□□□□□ -0.92
BRCA1-223ENST00000494123 CHTF8P0CG12 524 aa9.32□□□□□ -0.92
BRCA1-223ENST00000494123 ZNF625Q96I27 306 aaPredicted RBP9.32□□□□□ -0.92
BRCA1-223ENST00000494123 FAM30AQ9NZY2 134 aa9.32□□□□□ -0.92
BRCA1-223ENST00000494123 LINC00474Q9P2X8 69 aa9.32□□□□□ -0.92
BRCA1-223ENST00000494123 NDUFA12Q9UI09 145 aa9.32□□□□□ -0.92
BRCA1-223ENST00000494123 MYMXA0A1B0GTQ4 84 aa9.31□□□□□ -0.92
BRCA1-223ENST00000494123 NDUFC2-KCTD14E9PQ53 114 aa9.31□□□□□ -0.92
BRCA1-223ENST00000494123 PTTG1IPP53801 180 aa9.31□□□□□ -0.92
BRCA1-223ENST00000494123 TSPEAR-AS2P59090 65 aa9.31□□□□□ -0.92
BRCA1-223ENST00000494123 Q6ZSA8 131 aa9.31□□□□□ -0.92
BRCA1-223ENST00000494123 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.31□□□□□ -0.92
BRCA1-223ENST00000494123 HSBP1L1C9JCN9 74 aa9.31□□□□□ -0.92
BRCA1-223ENST00000494123 MAJINQ3KP22 176 aa9.31□□□□□ -0.92
BRCA1-223ENST00000494123 GAGE2EQ4V326 116 aa9.31□□□□□ -0.92
BRCA1-223ENST00000494123 Q6ZRP5 223 aa9.31□□□□□ -0.92
BRCA1-223ENST00000494123 GAGE2DQ9UEU5 116 aa9.31□□□□□ -0.92
BRCA1-223ENST00000494123 DYNC1H1Q14204 4646 aaKnown RBP9.3□□□□□ -0.92
BRCA1-223ENST00000494123 PFN2P35080 140 aa9.3□□□□□ -0.92
BRCA1-223ENST00000494123 NMUP48645 174 aa9.3□□□□□ -0.92
BRCA1-223ENST00000494123 HERV-K104P63124 156 aa9.3□□□□□ -0.92
BRCA1-223ENST00000494123 ERG28Q9UKR5 140 aa9.3□□□□□ -0.92
BRCA1-223ENST00000494123 PANO1I0J062 215 aa9.29□□□□□ -0.92
BRCA1-223ENST00000494123 CDK2AP2O75956 126 aa9.29□□□□□ -0.92
BRCA1-223ENST00000494123 MEIG1Q5JSS6 88 aa9.29□□□□□ -0.92
BRCA1-223ENST00000494123 SPACA4Q8TDM5 124 aa9.29□□□□□ -0.92
BRCA1-223ENST00000494123 HAMPP81172 84 aa9.28□□□□□ -0.92
BRCA1-223ENST00000494123 IGKV2D-26A0A0A0MRZ7 120 aa9.27□□□□□ -0.92
BRCA1-223ENST00000494123 CIRBPQ14011 172 aaKnown RBP9.27□□□□□ -0.92
BRCA1-223ENST00000494123 COX17Q14061 63 aa9.27□□□□□ -0.92
BRCA1-223ENST00000494123 ANKRD39Q53RE8 183 aa9.27□□□□□ -0.92
BRCA1-223ENST00000494123 LRP1BQ9NZR2 4599 aa9.27□□□□□ -0.93
BRCA1-223ENST00000494123 LINC00587B1AMM8 73 aa9.27□□□□□ -0.93
BRCA1-223ENST00000494123 SCXQ7RTU7 201 aa9.27□□□□□ -0.93
BRCA1-223ENST00000494123 XGP55808 180 aa9.26□□□□□ -0.93
BRCA1-223ENST00000494123 LINC00158P58513 81 aa9.26□□□□□ -0.93
BRCA1-223ENST00000494123 JOSD1Q15040 202 aaPredicted RBP9.26□□□□□ -0.93
BRCA1-223ENST00000494123 CIRBP-AS1Q8TBR5 109 aa9.26□□□□□ -0.93
BRCA1-223ENST00000494123 A0A087WYN8 130 aa9.25□□□□□ -0.93
BRCA1-223ENST00000494123 A0A0U1RRA0 63 aa9.25□□□□□ -0.93
BRCA1-223ENST00000494123 ZNF815PA8K554 130 aa9.25□□□□□ -0.93
BRCA1-223ENST00000494123 XAGE1AQ9HD64 81 aa9.25□□□□□ -0.93
BRCA1-223ENST00000494123 BIRC6Q9NR09 4857 aa9.25□□□□□ -0.93
BRCA1-223ENST00000494123 SMIM13P0DJ93 91 aa9.24□□□□□ -0.93
BRCA1-223ENST00000494123 TTTY13Q9BZ97 58 aa9.23□□□□□ -0.93
BRCA1-223ENST00000494123 C9orf129Q5T035 196 aaKnown RBP9.23□□□□□ -0.93
BRCA1-223ENST00000494123 PLAC8Q9NZF1 115 aa9.23□□□□□ -0.93
BRCA1-223ENST00000494123 A0A0J9YXY3 114 aa9.22□□□□□ -0.93
BRCA1-223ENST00000494123 SND1-IT1Q9HBX3 110 aa9.21□□□□□ -0.93
BRCA1-223ENST00000494123 A0A1W2PNN7 141 aa9.2□□□□□ -0.94
BRCA1-223ENST00000494123 PYY3Q5JQD4 70 aa9.2□□□□□ -0.94
BRCA1-223ENST00000494123 SCGB1D4Q6XE38 83 aa9.2□□□□□ -0.94
BRCA1-223ENST00000494123 FAM19A5Q7Z5A7 132 aaPredicted RBP9.2□□□□□ -0.94
BRCA1-223ENST00000494123 PCP2Q8IVA1 136 aa9.2□□□□□ -0.94
BRCA1-223ENST00000494123 MIR7-3HGQ8N6C7 128 aa9.2□□□□□ -0.94
BRCA1-223ENST00000494123 VAMP8Q9BV40 100 aa9.2□□□□□ -0.94
BRCA1-223ENST00000494123 FAM168BA1KXE4 195 aa9.2□□□□□ -0.94
BRCA1-223ENST00000494123 DNAH8Q96JB1 4490 aa9.19□□□□□ -0.94
BRCA1-223ENST00000494123 SMR3BP02814 79 aaPredicted RBP9.19□□□□□ -0.94
BRCA1-223ENST00000494123 PAM16Q9Y3D7 125 aa9.19□□□□□ -0.94
BRCA1-223ENST00000494123 SPATA45Q537H7 98 aa9.18□□□□□ -0.94
BRCA1-223ENST00000494123 DAND5Q8N907 189 aa9.18□□□□□ -0.94
BRCA1-223ENST00000494123 APOBP04114 4563 aaKnown RBP9.17□□□□□ -0.94
BRCA1-223ENST00000494123 TIMM17BO60830 172 aa9.16□□□□□ -0.94
BRCA1-223ENST00000494123 SERTAD4-AS1Q5TG53 156 aa9.16□□□□□ -0.94
BRCA1-223ENST00000494123 MIEN1Q9BRT3 115 aa9.16□□□□□ -0.94
BRCA1-223ENST00000494123 M0QXV9 152 aa9.16□□□□□ -0.94
BRCA1-223ENST00000494123 C7orf33Q8WU49 177 aa9.16□□□□□ -0.94
BRCA1-223ENST00000494123 KIAA1109Q2LD37 5005 aa9.15□□□□□ -0.94
BRCA1-223ENST00000494123 TMEM238C9JI98 176 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms