RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 DNAH10Q8IVF4 4471 aa9.04□□□□□ -0.96
C9orf3-221ENST00000489562 DNAH2Q9P225 4427 aa9.03□□□□□ -0.96
C9orf3-221ENST00000489562 IGLV5-52A0A0A0MRZ9 124 aa9.03□□□□□ -0.96
C9orf3-221ENST00000489562 LOC105371267A0A1B0GV96 52 aa9.03□□□□□ -0.96
C9orf3-221ENST00000489562 C2orf82Q6UX34 121 aa9.03□□□□□ -0.96
C9orf3-221ENST00000489562 Q6ZRU5 148 aa9.03□□□□□ -0.96
C9orf3-221ENST00000489562 NDUFA12Q9UI09 145 aa9.03□□□□□ -0.96
C9orf3-221ENST00000489562 FRAS1Q86XX4 4008 aa9.02□□□□□ -0.97
C9orf3-221ENST00000489562 MYMXA0A1B0GTQ4 84 aa9.02□□□□□ -0.97
C9orf3-221ENST00000489562 A0A1B0GVY2 172 aa9.02□□□□□ -0.97
C9orf3-221ENST00000489562 SLPIP03973 132 aa9.02□□□□□ -0.97
C9orf3-221ENST00000489562 HERV-K104P63124 156 aa9.02□□□□□ -0.97
C9orf3-221ENST00000489562 ANKRD39Q53RE8 183 aa9.02□□□□□ -0.97
C9orf3-221ENST00000489562 UNQ6190/PRO20217Q6UXQ8 127 aa9.02□□□□□ -0.97
C9orf3-221ENST00000489562 C9orf163Q8N9P6 203 aa9.02□□□□□ -0.97
C9orf3-221ENST00000489562 ZNF625Q96I27 306 aaPredicted RBP9.02□□□□□ -0.97
C9orf3-221ENST00000489562 VAMP8Q9BV40 100 aa9.02□□□□□ -0.97
C9orf3-221ENST00000489562 DNAH17Q9UFH2 4485 aa9.01□□□□□ -0.97
C9orf3-221ENST00000489562 TSPEAR-AS2P59090 65 aa9.01□□□□□ -0.97
C9orf3-221ENST00000489562 IGKV2D-26A0A0A0MRZ7 120 aa9□□□□□ -0.97
C9orf3-221ENST00000489562 SMIM6P0DI80 62 aa9□□□□□ -0.97
C9orf3-221ENST00000489562 KRTAP10-2P60368 255 aa9□□□□□ -0.97
C9orf3-221ENST00000489562 MAJINQ3KP22 176 aa9□□□□□ -0.97
C9orf3-221ENST00000489562 C10orf25Q5T742 122 aa9□□□□□ -0.97
C9orf3-221ENST00000489562 C6orf48Q9UBA6 75 aa9□□□□□ -0.97
C9orf3-221ENST00000489562 LINC00587B1AMM8 73 aa8.99□□□□□ -0.97
C9orf3-221ENST00000489562 S100A12P80511 92 aa8.98□□□□□ -0.97
C9orf3-221ENST00000489562 LOC107984640A0A0U1RRK4 108 aa8.97□□□□□ -0.97
C9orf3-221ENST00000489562 ZNF815PA8K554 130 aa8.97□□□□□ -0.97
C9orf3-221ENST00000489562 TLX1NBP0CAT3 122 aa8.97□□□□□ -0.97
C9orf3-221ENST00000489562 COX17Q14061 63 aa8.97□□□□□ -0.97
C9orf3-221ENST00000489562 SPATA45Q537H7 98 aa8.97□□□□□ -0.97
C9orf3-221ENST00000489562 PAM16Q9Y3D7 125 aa8.97□□□□□ -0.97
C9orf3-221ENST00000489562 GCSHP23434 173 aa8.96□□□□□ -0.98
C9orf3-221ENST00000489562 KRTAP17-1Q9BYP8 105 aa8.96□□□□□ -0.98
C9orf3-221ENST00000489562 ERG28Q9UKR5 140 aa8.96□□□□□ -0.98
C9orf3-221ENST00000489562 NDUFC2-KCTD14E9PQ53 114 aa8.95□□□□□ -0.98
C9orf3-221ENST00000489562 MEIG1Q5JSS6 88 aa8.95□□□□□ -0.98
C9orf3-221ENST00000489562 COX8AP10176 69 aa8.94□□□□□ -0.98
C9orf3-221ENST00000489562 FUSP35637 526 aaKnown RBP eCLIP8.94□□□□□ -0.98
C9orf3-221ENST00000489562 CIRBPQ14011 172 aaKnown RBP8.94□□□□□ -0.98
C9orf3-221ENST00000489562 C9orf116Q5BN46 136 aaPredicted RBP8.94□□□□□ -0.98
C9orf3-221ENST00000489562 SDIM1Q6ZPB5 146 aa8.94□□□□□ -0.98
C9orf3-221ENST00000489562 PCP2Q8IVA1 136 aa8.94□□□□□ -0.98
C9orf3-221ENST00000489562 TTTY13Q9BZ97 58 aa8.94□□□□□ -0.98
C9orf3-221ENST00000489562 BIRC6Q9NR09 4857 aa8.94□□□□□ -0.98
C9orf3-221ENST00000489562 FAT2Q9NYQ8 4349 aa8.93□□□□□ -0.98
C9orf3-221ENST00000489562 A0A0J9YXY3 114 aa8.93□□□□□ -0.98
C9orf3-221ENST00000489562 C16orf90A8MZG2 172 aa8.93□□□□□ -0.98
C9orf3-221ENST00000489562 TIMM17BO60830 172 aa8.93□□□□□ -0.98
C9orf3-221ENST00000489562 PFN2P35080 140 aa8.93□□□□□ -0.98
C9orf3-221ENST00000489562 RPL18AQ02543 176 aaKnown RBP8.93□□□□□ -0.98
C9orf3-221ENST00000489562 DLEU1O43261 78 aa8.92□□□□□ -0.98
C9orf3-221ENST00000489562 LINC00158P58513 81 aa8.92□□□□□ -0.98
C9orf3-221ENST00000489562 LINC01620Q4KN68 170 aa8.92□□□□□ -0.98
C9orf3-221ENST00000489562 SCGB1D4Q6XE38 83 aa8.92□□□□□ -0.98
C9orf3-221ENST00000489562 BOD1L2Q8IYS8 172 aa8.92□□□□□ -0.98
C9orf3-221ENST00000489562 LINC00474Q9P2X8 69 aa8.92□□□□□ -0.98
C9orf3-221ENST00000489562 PTTG1IPP53801 180 aa8.91□□□□□ -0.98
C9orf3-221ENST00000489562 Q6ZRP5 223 aa8.91□□□□□ -0.98
C9orf3-221ENST00000489562 TMEM238C9JI98 176 aa8.9□□□□□ -0.98
C9orf3-221ENST00000489562 SMIM13P0DJ93 91 aa8.9□□□□□ -0.98
C9orf3-221ENST00000489562 GAGE2BQ13066 116 aa8.9□□□□□ -0.98
C9orf3-221ENST00000489562 SLC25A34Q6PIV7 304 aa8.9□□□□□ -0.98
C9orf3-221ENST00000489562 A0A096LNI7 61 aa8.89□□□□□ -0.99
C9orf3-221ENST00000489562 GAGE2EQ4V326 116 aa8.89□□□□□ -0.99
C9orf3-221ENST00000489562 C14orf144Q96I85 54 aa8.89□□□□□ -0.99
C9orf3-221ENST00000489562 GAGE2DQ9UEU5 116 aa8.89□□□□□ -0.99
C9orf3-221ENST00000489562 KRTAP10-1P60331 282 aa8.88□□□□□ -0.99
C9orf3-221ENST00000489562 PKD1P98161 4303 aa8.88□□□□□ -0.99
C9orf3-221ENST00000489562 EPPK1P58107 5090 aaKnown RBP8.88□□□□□ -0.99
C9orf3-221ENST00000489562 IGKV2-24A0A0C4DH68 120 aa8.87□□□□□ -0.99
C9orf3-221ENST00000489562 A0A0U1RRA0 63 aa8.87□□□□□ -0.99
C9orf3-221ENST00000489562 Q6ZSA8 131 aa8.87□□□□□ -0.99
C9orf3-221ENST00000489562 Q6ZVH6 145 aa8.87□□□□□ -0.99
C9orf3-221ENST00000489562 MIR7-3HGQ8N6C7 128 aa8.87□□□□□ -0.99
C9orf3-221ENST00000489562 SPACA4Q8TDM5 124 aa8.87□□□□□ -0.99
C9orf3-221ENST00000489562 C12orf57Q99622 126 aa8.87□□□□□ -0.99
C9orf3-221ENST00000489562 SND1-IT1Q9HBX3 110 aa8.87□□□□□ -0.99
C9orf3-221ENST00000489562 COPS9Q8WXC6 57 aa8.86□□□□□ -0.99
C9orf3-221ENST00000489562 LITAFQ99732 161 aa8.86□□□□□ -0.99
C9orf3-221ENST00000489562 DNAH11Q96DT5 4516 aa8.86□□□□□ -0.99
C9orf3-221ENST00000489562 CHTF8P0CG12 524 aa8.85□□□□□ -0.99
C9orf3-221ENST00000489562 MIEN1Q9BRT3 115 aa8.85□□□□□ -0.99
C9orf3-221ENST00000489562 SPANXDQ9BXN6 97 aa8.85□□□□□ -0.99
C9orf3-221ENST00000489562 XAGE1AQ9HD64 81 aa8.85□□□□□ -0.99
C9orf3-221ENST00000489562 SPANXB1Q9NS25 103 aaPredicted RBP8.85□□□□□ -0.99
C9orf3-221ENST00000489562 SPANXCQ9NY87 97 aa8.85□□□□□ -0.99
C9orf3-221ENST00000489562 HIGD1BQ9P298 99 aa8.85□□□□□ -0.99
C9orf3-221ENST00000489562 UQCR10Q9UDW1 63 aa8.85□□□□□ -0.99
C9orf3-221ENST00000489562 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.85□□□□□ -0.99
C9orf3-221ENST00000489562 C9orf129Q5T035 196 aaKnown RBP8.84□□□□□ -0.99
C9orf3-221ENST00000489562 ADAMTSL4-AS1Q5T5F5 129 aa8.84□□□□□ -0.99
C9orf3-221ENST00000489562 LINC00518Q8N0U6 118 aa8.84□□□□□ -0.99
C9orf3-221ENST00000489562 DPH3Q96FX2 82 aa8.84□□□□□ -0.99
C9orf3-221ENST00000489562 HECTD4Q9Y4D8 3996 aa8.84□□□□□ -0.99
C9orf3-221ENST00000489562 LOC107984156A0A0G2JMH3 177 aa8.83□□□□□ -1
C9orf3-221ENST00000489562 IFITM1P13164 125 aa8.83□□□□□ -1
C9orf3-221ENST00000489562 ARL17AQ8IVW1 177 aa8.83□□□□□ -1
C9orf3-221ENST00000489562 DAND5Q8N907 189 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 92.7 ms