RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	AMELX	Q99217	191 aa		5.73	□□□□□ -1.49
USP4-213	ENST00000488520	CST9L	Q9H4G1	147 aa		5.73	□□□□□ -1.49
USP4-213	ENST00000488520		H0Y8G0	127 aa		5.72	□□□□□ -1.49
USP4-213	ENST00000488520	NUPR1	O60356	82 aa		5.72	□□□□□ -1.49
USP4-213	ENST00000488520	UBE2D1	P51668	147 aa		5.72	□□□□□ -1.49
USP4-213	ENST00000488520	ZC2HC1B	Q5TFG8	222 aa		5.72	□□□□□ -1.49
USP4-213	ENST00000488520	SERTAD4-AS1	Q5TG53	156 aa		5.72	□□□□□ -1.49
USP4-213	ENST00000488520	KRTAP5-3	Q6L8H2	238 aa		5.72	□□□□□ -1.49
USP4-213	ENST00000488520	C5orf38	Q86SI9	138 aa		5.72	□□□□□ -1.49
USP4-213	ENST00000488520		Q8N814	137 aa		5.72	□□□□□ -1.49
USP4-213	ENST00000488520	NTN5	Q8WTR8	489 aa	Predicted RBP	5.72	□□□□□ -1.49
USP4-213	ENST00000488520	PACRG	Q96M98	296 aa	Predicted RBP	5.72	□□□□□ -1.49
USP4-213	ENST00000488520	CHTOP	Q9Y3Y2	248 aa	Known RBP	5.72	□□□□□ -1.49
USP4-213	ENST00000488520	IGHV1-58	A0A0C4DH39	117 aa		5.71	□□□□□ -1.5
USP4-213	ENST00000488520		H3BRM9	83 aa		5.71	□□□□□ -1.5
USP4-213	ENST00000488520	LECT2	O14960	151 aa		5.71	□□□□□ -1.5
USP4-213	ENST00000488520		A0A096LNJ9	63 aa		5.7	□□□□□ -1.5
USP4-213	ENST00000488520		A0A0J9YXV3	536 aa		5.7	□□□□□ -1.5
USP4-213	ENST00000488520	TINCR	A0A1B0GVN0	87 aa		5.7	□□□□□ -1.5
USP4-213	ENST00000488520	hDV102S1	A0JD36	115 aa		5.7	□□□□□ -1.5
USP4-213	ENST00000488520	USP17L23	D6RBM5	183 aa		5.7	□□□□□ -1.5
USP4-213	ENST00000488520	PRSS2	P07478	247 aa		5.7	□□□□□ -1.5
USP4-213	ENST00000488520	ODF1	Q14990	250 aa		5.7	□□□□□ -1.5
USP4-213	ENST00000488520	COA6	Q5JTJ3	125 aa	Known RBP	5.7	□□□□□ -1.5
USP4-213	ENST00000488520	LINC00242	Q5T6M2	205 aa		5.7	□□□□□ -1.5
USP4-213	ENST00000488520	LINC00469	Q8N7U9	141 aa		5.7	□□□□□ -1.5
USP4-213	ENST00000488520	IGLV2-33	A0A075B6J2	118 aa	Predicted RBP	5.69	□□□□□ -1.5
USP4-213	ENST00000488520	TRAV16	A0A0A6YYK6	109 aa	Predicted RBP	5.69	□□□□□ -1.5
USP4-213	ENST00000488520	TRAV12-1	A0A0B4J245	112 aa		5.69	□□□□□ -1.5
USP4-213	ENST00000488520	WFDC2	Q14508	124 aa		5.69	□□□□□ -1.5
USP4-213	ENST00000488520	LINC01620	Q4KN68	170 aa		5.69	□□□□□ -1.5
USP4-213	ENST00000488520	C6orf226	Q5I0X4	101 aa		5.69	□□□□□ -1.5
USP4-213	ENST00000488520	FAM104A	Q969W3	186 aa		5.69	□□□□□ -1.5
USP4-213	ENST00000488520	FAT3	Q8TDW7	4589 aa		5.69	□□□□□ -1.5
USP4-213	ENST00000488520	HMCN2	Q8NDA2	5059 aa		5.69	□□□□□ -1.5
USP4-213	ENST00000488520	PKHD1L1	Q86WI1	4243 aa		5.68	□□□□□ -1.5
USP4-213	ENST00000488520	SNRPE	P62304	92 aa	Known RBP	5.68	□□□□□ -1.5
USP4-213	ENST00000488520	COX6A2	Q02221	97 aa		5.68	□□□□□ -1.5
USP4-213	ENST00000488520	TMEM170B	Q5T4T1	132 aa		5.68	□□□□□ -1.5
USP4-213	ENST00000488520	KRTAP26-1	Q6PEX3	210 aa		5.68	□□□□□ -1.5
USP4-213	ENST00000488520	LINC00173	Q6ZV60	143 aa		5.68	□□□□□ -1.5
USP4-213	ENST00000488520	FAM19A3	Q7Z5A8	133 aa		5.68	□□□□□ -1.5
USP4-213	ENST00000488520	LINC01561	Q8N1V8	128 aa		5.68	□□□□□ -1.5
USP4-213	ENST00000488520		A0A087WZ39	114 aa		5.67	□□□□□ -1.5
USP4-213	ENST00000488520	IGHV3OR16-9	A0A0B4J2B5	98 aa		5.67	□□□□□ -1.5
USP4-213	ENST00000488520	C20orf202	A1L168	122 aa		5.67	□□□□□ -1.5
USP4-213	ENST00000488520		F8VRH5	84 aa		5.67	□□□□□ -1.5
USP4-213	ENST00000488520	AKR1D1	P51857	326 aa		5.67	□□□□□ -1.5
USP4-213	ENST00000488520	KRTDAP	P60985	99 aa		5.67	□□□□□ -1.5
USP4-213	ENST00000488520	HIGD2B	Q4VC39	106 aa		5.67	□□□□□ -1.5
USP4-213	ENST00000488520	PET117	Q6UWS5	81 aa		5.67	□□□□□ -1.5
USP4-213	ENST00000488520		Q6ZSA8	131 aa		5.67	□□□□□ -1.5
USP4-213	ENST00000488520	OR10D4P	Q8NGN7	298 aa		5.67	□□□□□ -1.5
USP4-213	ENST00000488520	ORAOV1	Q8WV07	137 aa		5.67	□□□□□ -1.5
USP4-213	ENST00000488520	CHAC1	Q9BUX1	264 aa		5.67	□□□□□ -1.5
USP4-213	ENST00000488520	TOMM7	Q9P0U1	55 aa		5.67	□□□□□ -1.5
USP4-213	ENST00000488520	IGHV3-64	A0A075B6Q5	118 aa		5.66	□□□□□ -1.5
USP4-213	ENST00000488520		F8WDY8	70 aa		5.66	□□□□□ -1.5
USP4-213	ENST00000488520	DPM2	O94777	84 aa		5.66	□□□□□ -1.5
USP4-213	ENST00000488520	IGLC3	P0DOY3	106 aa		5.66	□□□□□ -1.5
USP4-213	ENST00000488520	PLN	P26678	52 aa		5.66	□□□□□ -1.5
USP4-213	ENST00000488520	CKS1B	P61024	79 aa		5.66	□□□□□ -1.5
USP4-213	ENST00000488520	SCX	Q7RTU7	201 aa		5.66	□□□□□ -1.5
USP4-213	ENST00000488520	DPH3	Q96FX2	82 aa		5.66	□□□□□ -1.5
USP4-213	ENST00000488520	MRPL35	Q9NZE8	188 aa	Known RBP	5.66	□□□□□ -1.5
USP4-213	ENST00000488520	CDKN2A-AS1	Q9UH64	79 aa		5.66	□□□□□ -1.5
USP4-213	ENST00000488520	SYS1-DBNDD2	H3BUS1	97 aa		5.65	□□□□□ -1.5
USP4-213	ENST00000488520	IGKC	P01834	107 aa		5.65	□□□□□ -1.5
USP4-213	ENST00000488520	HERVK_113	P61574	105 aa		5.65	□□□□□ -1.5
USP4-213	ENST00000488520	SPAG11B	Q08648	103 aa		5.65	□□□□□ -1.5
USP4-213	ENST00000488520	CAMK2N2	Q96S95	79 aa		5.65	□□□□□ -1.5
USP4-213	ENST00000488520	PKIG	Q9Y2B9	76 aa		5.65	□□□□□ -1.5
USP4-213	ENST00000488520	IGLV4-69	A0A075B6H9	119 aa		5.64	□□□□□ -1.51
USP4-213	ENST00000488520	GVQW2	A0A096LPI5	108 aa	Predicted RBP	5.64	□□□□□ -1.51
USP4-213	ENST00000488520	OXT	P01178	125 aa		5.64	□□□□□ -1.51
USP4-213	ENST00000488520	SPINK8	P0C7L1	97 aa		5.64	□□□□□ -1.51
USP4-213	ENST00000488520	KRTAP10-4	P60372	401 aa	Predicted RBP	5.64	□□□□□ -1.51
USP4-213	ENST00000488520	SYCN	Q0VAF6	134 aa		5.64	□□□□□ -1.51
USP4-213	ENST00000488520	HIST3H2BB	Q8N257	126 aa		5.64	□□□□□ -1.51
USP4-213	ENST00000488520	C2orf48	Q96LS8	159 aa		5.64	□□□□□ -1.51
USP4-213	ENST00000488520	C5orf52	A6NGY3	159 aa		5.63	□□□□□ -1.51
USP4-213	ENST00000488520	C11orf86	A6NJI1	115 aa		5.63	□□□□□ -1.51
USP4-213	ENST00000488520	NDUFA1	O15239	70 aa		5.63	□□□□□ -1.51
USP4-213	ENST00000488520	C3orf79	P0CE67	100 aa		5.63	□□□□□ -1.51
USP4-213	ENST00000488520	C15orf56	Q8N910	161 aa		5.63	□□□□□ -1.51
USP4-213	ENST00000488520	CIRBP-AS1	Q8TBR5	109 aa		5.63	□□□□□ -1.51
USP4-213	ENST00000488520	COX7B2	Q8TF08	81 aa		5.63	□□□□□ -1.51
USP4-213	ENST00000488520	IGLV5-45	A0A087WSX0	123 aa		5.62	□□□□□ -1.51
USP4-213	ENST00000488520	ZNF22	P17026	224 aa	Predicted RBP	5.62	□□□□□ -1.51
USP4-213	ENST00000488520	CXCL5	P42830	114 aa		5.62	□□□□□ -1.51
USP4-213	ENST00000488520	CNBP	P62633	177 aa	Known RBP	5.62	□□□□□ -1.51
USP4-213	ENST00000488520		Q8IZM0	81 aa		5.62	□□□□□ -1.51
USP4-213	ENST00000488520	LINC00526	Q96FQ7	95 aa		5.62	□□□□□ -1.51
USP4-213	ENST00000488520	CARD19	Q96LW7	228 aa		5.62	□□□□□ -1.51
USP4-213	ENST00000488520	HIST1H2BL	Q99880	126 aa		5.62	□□□□□ -1.51
USP4-213	ENST00000488520	PMCHL2	Q9BQD1	86 aa		5.62	□□□□□ -1.51
USP4-213	ENST00000488520	TRIAP1	O43715	76 aa		5.61	□□□□□ -1.51
USP4-213	ENST00000488520	SCGB1D1	O95968	90 aa		5.61	□□□□□ -1.51
USP4-213	ENST00000488520	SFTA2	Q6UW10	78 aa		5.61	□□□□□ -1.51
USP4-213	ENST00000488520	C9orf163	Q8N9P6	203 aa		5.61	□□□□□ -1.51

Retrieved 100 of 20,778 RNA–protein pairs in 130.7 ms