RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 HAMPP81172 84 aa9.42□□□□□ -0.9
HMGN1-216ENST00000486741 LINC00959A0A1B0GUT2 108 aa9.41□□□□□ -0.9
HMGN1-216ENST00000486741 PKIGQ9Y2B9 76 aa9.41□□□□□ -0.9
HMGN1-216ENST00000486741 CELSR2Q9HCU4 2923 aa9.41□□□□□ -0.9
HMGN1-216ENST00000486741 TRBV10-2A0A0K0K1G8 114 aa9.41□□□□□ -0.9
HMGN1-216ENST00000486741 SMIM1B2RUZ4 78 aa9.41□□□□□ -0.9
HMGN1-216ENST00000486741 NF1P21359 2839 aa9.4□□□□□ -0.9
HMGN1-216ENST00000486741 NOTCH1P46531 2555 aa9.4□□□□□ -0.9
HMGN1-216ENST00000486741 NTM-AS1Q6ZSK4 140 aa9.4□□□□□ -0.9
HMGN1-216ENST00000486741 OVOL2Q9BRP0 275 aa9.4□□□□□ -0.9
HMGN1-216ENST00000486741 MIFP14174 115 aa9.4□□□□□ -0.9
HMGN1-216ENST00000486741 C11orf45Q8TAV5 145 aa9.4□□□□□ -0.9
HMGN1-216ENST00000486741 XAGE1AQ9HD64 81 aa9.4□□□□□ -0.91
HMGN1-216ENST00000486741 NKAPP1Q8N9T2 125 aa9.39□□□□□ -0.91
HMGN1-216ENST00000486741 KRTAP1-3Q8IUG1 177 aa9.39□□□□□ -0.91
HMGN1-216ENST00000486741 SPANXCQ9NY87 97 aa9.39□□□□□ -0.91
HMGN1-216ENST00000486741 DEFB131BA0A096LNP1 70 aa9.38□□□□□ -0.91
HMGN1-216ENST00000486741 hADV29S1A0JD25 119 aa9.38□□□□□ -0.91
HMGN1-216ENST00000486741 SLPIP03973 132 aa9.38□□□□□ -0.91
HMGN1-216ENST00000486741 RPL18AQ02543 176 aaKnown RBP9.38□□□□□ -0.91
HMGN1-216ENST00000486741 ATOX1O00244 68 aa9.38□□□□□ -0.91
HMGN1-216ENST00000486741 COL6A5A8TX70 2615 aa9.37□□□□□ -0.91
HMGN1-216ENST00000486741 H7C423 109 aa9.36□□□□□ -0.91
HMGN1-216ENST00000486741 C9orf116Q5BN46 136 aaPredicted RBP9.36□□□□□ -0.91
HMGN1-216ENST00000486741 CCL18P55774 89 aa9.36□□□□□ -0.91
HMGN1-216ENST00000486741 KPRPQ5T749 579 aaPredicted RBP9.36□□□□□ -0.91
HMGN1-216ENST00000486741 ACYP1P07311 99 aa9.35□□□□□ -0.91
HMGN1-216ENST00000486741 DEFB105AQ8NG35 78 aa9.35□□□□□ -0.91
HMGN1-216ENST00000486741 KIR2DL5BQ8NHK3 375 aa9.35□□□□□ -0.91
HMGN1-216ENST00000486741 STAB1Q9NY15 2570 aa9.35□□□□□ -0.91
HMGN1-216ENST00000486741 FBN2P35556 2912 aa9.35□□□□□ -0.91
HMGN1-216ENST00000486741 UQCRQO14949 82 aa9.35□□□□□ -0.91
HMGN1-216ENST00000486741 A0A0U1RQV1 116 aa9.35□□□□□ -0.91
HMGN1-216ENST00000486741 SPANXDQ9BXN6 97 aa9.35□□□□□ -0.91
HMGN1-216ENST00000486741 UBL5Q9BZL1 73 aa9.35□□□□□ -0.91
HMGN1-216ENST00000486741 NANOS2P60321 138 aaKnown RBP9.34□□□□□ -0.91
HMGN1-216ENST00000486741 ORMDL1Q9P0S3 153 aa9.34□□□□□ -0.91
HMGN1-216ENST00000486741 TRBV30A0A0K0K1B3 111 aa9.34□□□□□ -0.91
HMGN1-216ENST00000486741 H0YGX0 51 aa9.34□□□□□ -0.91
HMGN1-216ENST00000486741 BRK1Q8WUW1 75 aa9.34□□□□□ -0.91
HMGN1-216ENST00000486741 APCP25054 2843 aa9.34□□□□□ -0.91
HMGN1-216ENST00000486741 IBA57-AS1B1ANH7 110 aa9.34□□□□□ -0.92
HMGN1-216ENST00000486741 PRR3P79522 188 aaKnown RBP9.34□□□□□ -0.92
HMGN1-216ENST00000486741 H3BT86 120 aa9.33□□□□□ -0.92
HMGN1-216ENST00000486741 PPDPFQ9H3Y8 114 aa9.33□□□□□ -0.92
HMGN1-216ENST00000486741 CSMD1Q96PZ7 3565 aa9.33□□□□□ -0.92
HMGN1-216ENST00000486741 CELA1Q9UNI1 258 aa9.32□□□□□ -0.92
HMGN1-216ENST00000486741 A0A0J9YWU9 116 aa9.32□□□□□ -0.92
HMGN1-216ENST00000486741 CD164L2Q6UWJ8 174 aa9.32□□□□□ -0.92
HMGN1-216ENST00000486741 LINC00643Q86TS7 51 aa9.32□□□□□ -0.92
HMGN1-216ENST00000486741 C14orf132Q9NPU4 83 aa9.32□□□□□ -0.92
HMGN1-216ENST00000486741 C3orf22Q8N5N4 141 aa9.31□□□□□ -0.92
HMGN1-216ENST00000486741 CXCL5P42830 114 aa9.31□□□□□ -0.92
HMGN1-216ENST00000486741 SDIM1Q6ZPB5 146 aa9.31□□□□□ -0.92
HMGN1-216ENST00000486741 Q6ZTC4 211 aa9.31□□□□□ -0.92
HMGN1-216ENST00000486741 LOC107984640A0A0U1RRK4 108 aa9.31□□□□□ -0.92
HMGN1-216ENST00000486741 TIMM17BO60830 172 aa9.31□□□□□ -0.92
HMGN1-216ENST00000486741 CR1P17927 2039 aa9.3□□□□□ -0.92
HMGN1-216ENST00000486741 GHRHP01286 108 aa9.3□□□□□ -0.92
HMGN1-216ENST00000486741 KLK5Q9Y337 293 aaPredicted RBP9.3□□□□□ -0.92
HMGN1-216ENST00000486741 SVEP1Q4LDE5 3571 aa9.3□□□□□ -0.92
HMGN1-216ENST00000486741 HRCT1Q6UXD1 115 aa9.3□□□□□ -0.92
HMGN1-216ENST00000486741 UNQ6190/PRO20217Q6UXQ8 127 aa9.3□□□□□ -0.92
HMGN1-216ENST00000486741 Q8N3U1 123 aa9.3□□□□□ -0.92
HMGN1-216ENST00000486741 CDIP1Q9H305 208 aa9.3□□□□□ -0.92
HMGN1-216ENST00000486741 NBEAL1Q6ZS30 2694 aa9.3□□□□□ -0.92
HMGN1-216ENST00000486741 C20orf197Q8N268 126 aa9.29□□□□□ -0.92
HMGN1-216ENST00000486741 CSDC2Q9Y534 153 aaKnown RBP9.29□□□□□ -0.92
HMGN1-216ENST00000486741 LELP1Q5T871 98 aa9.29□□□□□ -0.92
HMGN1-216ENST00000486741 SMIM11BQ8TCY0 68 aa9.28□□□□□ -0.92
HMGN1-216ENST00000486741 C6orf99Q4VX62 202 aa9.28□□□□□ -0.92
HMGN1-216ENST00000486741 A0A087WZ39 114 aa9.28□□□□□ -0.92
HMGN1-216ENST00000486741 TRAV23DV6A0A075B6W5 121 aa9.27□□□□□ -0.93
HMGN1-216ENST00000486741 KRTAP1-1Q07627 177 aa9.27□□□□□ -0.93
HMGN1-216ENST00000486741 LST1O00453 97 aa9.27□□□□□ -0.93
HMGN1-216ENST00000486741 DSCR8Q96T75 97 aa9.27□□□□□ -0.93
HMGN1-216ENST00000486741 C6orf223Q8N319 242 aa9.27□□□□□ -0.93
HMGN1-216ENST00000486741 X6R8D5 127 aa9.27□□□□□ -0.93
HMGN1-216ENST00000486741 CELSR1Q9NYQ6 3014 aa9.27□□□□□ -0.93
HMGN1-216ENST00000486741 KRTAP10-3P60369 221 aa9.26□□□□□ -0.93
HMGN1-216ENST00000486741 CYSRT1A8MQ03 144 aa9.26□□□□□ -0.93
HMGN1-216ENST00000486741 GIG44P09565 113 aaPredicted RBP9.26□□□□□ -0.93
HMGN1-216ENST00000486741 RMI2Q96E14 147 aa9.26□□□□□ -0.93
HMGN1-216ENST00000486741 IGKV2-24A0A0C4DH68 120 aa9.25□□□□□ -0.93
HMGN1-216ENST00000486741 FAM19A5Q7Z5A7 132 aaPredicted RBP9.25□□□□□ -0.93
HMGN1-216ENST00000486741 TMEM258P61165 79 aa9.25□□□□□ -0.93
HMGN1-216ENST00000486741 WFDC10BQ8IUB3 73 aa9.23□□□□□ -0.93
HMGN1-216ENST00000486741 IGHV3OR16-9A0A0B4J2B5 98 aa9.23□□□□□ -0.93
HMGN1-216ENST00000486741 DIRC1Q969H9 104 aa9.23□□□□□ -0.93
HMGN1-216ENST00000486741 UBE2BP63146 152 aa9.22□□□□□ -0.93
HMGN1-216ENST00000486741 Q8IZM0 81 aa9.22□□□□□ -0.93
HMGN1-216ENST00000486741 SPATA3Q8NHX4 192 aa9.22□□□□□ -0.93
HMGN1-216ENST00000486741 A8MTW9 85 aa9.22□□□□□ -0.93
HMGN1-216ENST00000486741 EIF4EBP3O60516 100 aaPredicted RBP9.22□□□□□ -0.93
HMGN1-216ENST00000486741 MXRA5Q9NR99 2828 aa9.22□□□□□ -0.93
HMGN1-216ENST00000486741 IGLV5-39A0A0G2JS06 123 aa9.22□□□□□ -0.93
HMGN1-216ENST00000486741 MPLKIPQ8TAP9 179 aa9.22□□□□□ -0.93
HMGN1-216ENST00000486741 C19orf73Q9NVV2 129 aa9.22□□□□□ -0.93
HMGN1-216ENST00000486741 ETDCA0A1B0GVM5 59 aa9.21□□□□□ -0.94
HMGN1-216ENST00000486741 SOSTDC1Q6X4U4 206 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 111.2 ms