RNA–Protein interactions for RNA: ENST00000482558.5

SNX13-208, Transcript of sorting nexin 13, humanhuman

TSL 2

Gene SNX13, Length 1,139 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-208ENST00000482558 CFC1BP0CG36 223 aa5.39□□□□□ -1.55
SNX13-208ENST00000482558 CFC1P0CG37 223 aa5.39□□□□□ -1.55
SNX13-208ENST00000482558 MIAQ16674 131 aa5.39□□□□□ -1.55
SNX13-208ENST00000482558 ATP6V0E2Q8NHE4 81 aa5.39□□□□□ -1.55
SNX13-208ENST00000482558 DEFB104AQ8WTQ1 72 aa5.39□□□□□ -1.55
SNX13-208ENST00000482558 PRAC1Q96KF2 57 aa5.39□□□□□ -1.55
SNX13-208ENST00000482558 KRTAP2-2Q9BYT5 123 aa5.39□□□□□ -1.55
SNX13-208ENST00000482558 CDC42SE2Q9NRR3 84 aa5.39□□□□□ -1.55
SNX13-208ENST00000482558 ERG28Q9UKR5 140 aa5.39□□□□□ -1.55
SNX13-208ENST00000482558 APOMO95445 188 aa5.38□□□□□ -1.55
SNX13-208ENST00000482558 COX6CP09669 75 aa5.38□□□□□ -1.55
SNX13-208ENST00000482558 RBX1P62877 108 aa5.38□□□□□ -1.55
SNX13-208ENST00000482558 C6orf223Q8N319 242 aa5.38□□□□□ -1.55
SNX13-208ENST00000482558 NAA38Q9BRA0 125 aaKnown RBP5.38□□□□□ -1.55
SNX13-208ENST00000482558 ANK3Q12955 4377 aaKnown RBP5.37□□□□□ -1.55
SNX13-208ENST00000482558 WNK1Q9H4A3 2382 aa5.37□□□□□ -1.55
SNX13-208ENST00000482558 TRBV6-8A0A0A6YYG3 113 aa5.37□□□□□ -1.55
SNX13-208ENST00000482558 LOC107984156A0A0G2JMH3 177 aa5.37□□□□□ -1.55
SNX13-208ENST00000482558 SCGB1C2P0DMR2 95 aa5.37□□□□□ -1.55
SNX13-208ENST00000482558 LINC00694P0DN24 101 aa5.37□□□□□ -1.55
SNX13-208ENST00000482558 CEMP1Q6PRD7 247 aaPredicted RBP5.37□□□□□ -1.55
SNX13-208ENST00000482558 NTM-AS1Q6ZSK4 140 aa5.37□□□□□ -1.55
SNX13-208ENST00000482558 SH2D6Q7Z4S9 175 aa5.37□□□□□ -1.55
SNX13-208ENST00000482558 MUSTN1Q8IVN3 82 aa5.37□□□□□ -1.55
SNX13-208ENST00000482558 ARL17AQ8IVW1 177 aa5.37□□□□□ -1.55
SNX13-208ENST00000482558 VPS25Q9BRG1 176 aa5.37□□□□□ -1.55
SNX13-208ENST00000482558 CDKN2A-AS1Q9UH64 79 aa5.37□□□□□ -1.55
SNX13-208ENST00000482558 PRO0255Q9UI72 69 aa5.37□□□□□ -1.55
SNX13-208ENST00000482558 ACANP16112 2415 aa5.36□□□□□ -1.55
SNX13-208ENST00000482558 ITPR2Q14571 2701 aa5.36□□□□□ -1.55
SNX13-208ENST00000482558 NBPF19A0A087WUL8 3843 aa5.36□□□□□ -1.55
SNX13-208ENST00000482558 TRBV30A0A0K0K1B3 111 aa5.36□□□□□ -1.55
SNX13-208ENST00000482558 A0A1B0GUV1 79 aa5.36□□□□□ -1.55
SNX13-208ENST00000482558 SMIM1B2RUZ4 78 aa5.36□□□□□ -1.55
SNX13-208ENST00000482558 H3BMG7 143 aa5.36□□□□□ -1.55
SNX13-208ENST00000482558 IGHV3-33P01772 117 aa5.36□□□□□ -1.55
SNX13-208ENST00000482558 SPINK8P0C7L1 97 aa5.36□□□□□ -1.55
SNX13-208ENST00000482558 NDUFV3P56181 108 aaKnown RBP5.36□□□□□ -1.55
SNX13-208ENST00000482558 KRTAP10-3P60369 221 aa5.36□□□□□ -1.55
SNX13-208ENST00000482558 WFDC9Q8NEX5 89 aa5.36□□□□□ -1.55
SNX13-208ENST00000482558 LITAFQ99732 161 aa5.36□□□□□ -1.55
SNX13-208ENST00000482558 SMR3AQ99954 134 aa5.36□□□□□ -1.55
SNX13-208ENST00000482558 PRO0628Q9UI54 55 aa5.36□□□□□ -1.55
SNX13-208ENST00000482558 MTORP42345 2549 aa5.36□□□□□ -1.55
SNX13-208ENST00000482558 ZNF469Q96JG9 3925 aaPredicted RBP5.35□□□□□ -1.55
SNX13-208ENST00000482558 IGHV3-64A0A075B6Q5 118 aa5.35□□□□□ -1.55
SNX13-208ENST00000482558 TRAV8-3A0A0A6YYJ7 113 aa5.35□□□□□ -1.55
SNX13-208ENST00000482558 MIFP14174 115 aa5.35□□□□□ -1.55
SNX13-208ENST00000482558 PSMB2P49721 201 aa5.35□□□□□ -1.55
SNX13-208ENST00000482558 ATXN8Q156A1 80 aa5.35□□□□□ -1.55
SNX13-208ENST00000482558 C1orf195Q5TG92 126 aa5.35□□□□□ -1.55
SNX13-208ENST00000482558 Q6ZRP5 223 aa5.35□□□□□ -1.55
SNX13-208ENST00000482558 OCR1Q9BZK8 76 aa5.35□□□□□ -1.55
SNX13-208ENST00000482558 WFDC10AQ9H1F0 79 aa5.35□□□□□ -1.55
SNX13-208ENST00000482558 TRAV13-1A0A0B4J241 112 aa5.34□□□□□ -1.55
SNX13-208ENST00000482558 IGHV3OR16-9A0A0B4J2B5 98 aa5.34□□□□□ -1.55
SNX13-208ENST00000482558 Q1RN00 199 aa5.34□□□□□ -1.55
SNX13-208ENST00000482558 RNASE13Q5GAN3 156 aaKnown RBP5.34□□□□□ -1.55
SNX13-208ENST00000482558 TTC32Q5I0X7 151 aa5.34□□□□□ -1.55
SNX13-208ENST00000482558 LINC01600Q96MT4 127 aa5.34□□□□□ -1.55
SNX13-208ENST00000482558 CHCHD5Q9BSY4 110 aa5.34□□□□□ -1.55
SNX13-208ENST00000482558 PRO0461Q9UI25 63 aa5.34□□□□□ -1.55
SNX13-208ENST00000482558 DEFB130BP0DP73 79 aa5.33□□□□□ -1.56
SNX13-208ENST00000482558 DEFB130AP0DP74 79 aa5.33□□□□□ -1.56
SNX13-208ENST00000482558 SS18Q15532 418 aa5.33□□□□□ -1.56
SNX13-208ENST00000482558 ZNF625Q96I27 306 aaPredicted RBP5.33□□□□□ -1.56
SNX13-208ENST00000482558 SIGMAR1Q99720 223 aa5.33□□□□□ -1.56
SNX13-208ENST00000482558 TEP1Q99973 2627 aaKnown RBP5.33□□□□□ -1.56
SNX13-208ENST00000482558 NF1P21359 2839 aa5.33□□□□□ -1.56
SNX13-208ENST00000482558 COX6A2Q02221 97 aa5.32□□□□□ -1.56
SNX13-208ENST00000482558 WFDC2Q14508 124 aa5.32□□□□□ -1.56
SNX13-208ENST00000482558 NOTCH2NLQ7Z3S9 236 aa5.32□□□□□ -1.56
SNX13-208ENST00000482558 COX7B2Q8TF08 81 aa5.32□□□□□ -1.56
SNX13-208ENST00000482558 IBA57-AS1B1ANH7 110 aa5.31□□□□□ -1.56
SNX13-208ENST00000482558 TCL1BO95988 128 aa5.31□□□□□ -1.56
SNX13-208ENST00000482558 ATP5G1P05496 136 aa5.31□□□□□ -1.56
SNX13-208ENST00000482558 IGKV2-30P06310 120 aa5.31□□□□□ -1.56
SNX13-208ENST00000482558 SPART-AS1P0CW21 52 aa5.31□□□□□ -1.56
SNX13-208ENST00000482558 DAD1P61803 113 aa5.31□□□□□ -1.56
SNX13-208ENST00000482558 PRR3P79522 188 aaKnown RBP5.31□□□□□ -1.56
SNX13-208ENST00000482558 MEIG1Q5JSS6 88 aa5.31□□□□□ -1.56
SNX13-208ENST00000482558 ADAMTSL4-AS1Q5T5F5 129 aa5.31□□□□□ -1.56
SNX13-208ENST00000482558 LCE1EQ5T753 118 aa5.31□□□□□ -1.56
SNX13-208ENST00000482558 FAM222AQ5U5X8 452 aa5.31□□□□□ -1.56
SNX13-208ENST00000482558 TEN1Q86WV5 123 aa5.31□□□□□ -1.56
SNX13-208ENST00000482558 LINC00308Q8TCZ7 52 aa5.31□□□□□ -1.56
SNX13-208ENST00000482558 PPDPFLQ8WWR9 84 aa5.31□□□□□ -1.56
SNX13-208ENST00000482558 ICOSQ9Y6W8 199 aa5.31□□□□□ -1.56
SNX13-208ENST00000482558 SETD2Q9BYW2 2564 aaPredicted RBP5.31□□□□□ -1.56
SNX13-208ENST00000482558 TRAV13-2A0A0B4J235 113 aa5.3□□□□□ -1.56
SNX13-208ENST00000482558 A0A0U1RQV1 116 aa5.3□□□□□ -1.56
SNX13-208ENST00000482558 TMEM262E9PQX1 116 aa5.3□□□□□ -1.56
SNX13-208ENST00000482558 SCGB1A1P11684 91 aa5.3□□□□□ -1.56
SNX13-208ENST00000482558 CXCL5P42830 114 aa5.3□□□□□ -1.56
SNX13-208ENST00000482558 ETDBQ3ZM63 59 aa5.3□□□□□ -1.56
SNX13-208ENST00000482558 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP5.3□□□□□ -1.56
SNX13-208ENST00000482558 MUC7Q8TAX7 377 aa5.3□□□□□ -1.56
SNX13-208ENST00000482558 LINC00959A0A1B0GUT2 108 aa5.29□□□□□ -1.56
SNX13-208ENST00000482558 H0Y9J4 135 aa5.29□□□□□ -1.56
SNX13-208ENST00000482558 H3BT86 120 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms