RNA–Protein interactions for RNA: ENST00000474643.5

VARS-223, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 885 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-223ENST00000474643 HIST3H2BBQ8N257 126 aa9.63□□□□□ -0.87
VARS-223ENST00000474643 SPACA4Q8TDM5 124 aa9.63□□□□□ -0.87
VARS-223ENST00000474643 ORAOV1Q8WV07 137 aa9.63□□□□□ -0.87
VARS-223ENST00000474643 CAMK2N2Q96S95 79 aa9.63□□□□□ -0.87
VARS-223ENST00000474643 MAP1LC3CQ9BXW4 147 aa9.63□□□□□ -0.87
VARS-223ENST00000474643 IGHV3OR16-9A0A0B4J2B5 98 aa9.62□□□□□ -0.87
VARS-223ENST00000474643 TINCRA0A1B0GVN0 87 aa9.62□□□□□ -0.87
VARS-223ENST00000474643 S100A2P29034 98 aa9.62□□□□□ -0.87
VARS-223ENST00000474643 HERVK_113P63121 156 aa9.62□□□□□ -0.87
VARS-223ENST00000474643 CIRBPQ14011 172 aaKnown RBP9.62□□□□□ -0.87
VARS-223ENST00000474643 OR10D4PQ8NGN7 298 aa9.62□□□□□ -0.87
VARS-223ENST00000474643 GEMIN7Q9H840 131 aaKnown RBP9.61□□□□□ -0.87
VARS-223ENST00000474643 AKR1D1P51857 326 aa9.6□□□□□ -0.87
VARS-223ENST00000474643 HNRNPA3P51991 378 aaKnown RBP9.6□□□□□ -0.87
VARS-223ENST00000474643 SNRPEP62304 92 aaKnown RBP9.6□□□□□ -0.87
VARS-223ENST00000474643 PLA2G2DQ9UNK4 145 aa9.6□□□□□ -0.87
VARS-223ENST00000474643 LRP1Q07954 4544 aaKnown RBP9.59□□□□□ -0.87
VARS-223ENST00000474643 IGLV5-45A0A087WSX0 123 aa9.59□□□□□ -0.87
VARS-223ENST00000474643 A0A087WZ39 114 aa9.59□□□□□ -0.87
VARS-223ENST00000474643 IGLC3P0DOY3 106 aa9.59□□□□□ -0.87
VARS-223ENST00000474643 FABP4P15090 132 aa9.59□□□□□ -0.87
VARS-223ENST00000474643 PET117Q6UWS5 81 aa9.59□□□□□ -0.87
VARS-223ENST00000474643 STPG4Q8N801 248 aa9.59□□□□□ -0.87
VARS-223ENST00000474643 C2orf48Q96LS8 159 aa9.59□□□□□ -0.87
VARS-223ENST00000474643 HIST1H2BLQ99880 126 aa9.59□□□□□ -0.87
VARS-223ENST00000474643 PLAC8Q9NZF1 115 aa9.59□□□□□ -0.87
VARS-223ENST00000474643 LINC00474Q9P2X8 69 aa9.59□□□□□ -0.87
VARS-223ENST00000474643 TMA7Q9Y2S6 64 aaKnown RBP9.59□□□□□ -0.87
VARS-223ENST00000474643 F8VRH5 84 aa9.58□□□□□ -0.88
VARS-223ENST00000474643 SYS1-DBNDD2H3BUS1 97 aa9.58□□□□□ -0.88
VARS-223ENST00000474643 Q6ZRU5 148 aa9.58□□□□□ -0.88
VARS-223ENST00000474643 CHTOPQ9Y3Y2 248 aaKnown RBP9.58□□□□□ -0.88
VARS-223ENST00000474643 NDUFA1O15239 70 aa9.57□□□□□ -0.88
VARS-223ENST00000474643 PRSS2P07478 247 aa9.57□□□□□ -0.88
VARS-223ENST00000474643 PLNP26678 52 aa9.57□□□□□ -0.88
VARS-223ENST00000474643 ODF1Q14990 250 aa9.57□□□□□ -0.88
VARS-223ENST00000474643 FAT3Q8TDW7 4589 aa9.56□□□□□ -0.88
VARS-223ENST00000474643 PKHD1L1Q86WI1 4243 aa9.56□□□□□ -0.88
VARS-223ENST00000474643 A0A0J9YXV3 536 aa9.56□□□□□ -0.88
VARS-223ENST00000474643 LINC00469Q8N7U9 141 aa9.56□□□□□ -0.88
VARS-223ENST00000474643 TOMM7Q9P0U1 55 aa9.56□□□□□ -0.88
VARS-223ENST00000474643 A0A096LNI7 61 aa9.55□□□□□ -0.88
VARS-223ENST00000474643 LOC107984640A0A0U1RRK4 108 aa9.55□□□□□ -0.88
VARS-223ENST00000474643 LINC01545Q5VT33 79 aa9.55□□□□□ -0.88
VARS-223ENST00000474643 F8WDY8 70 aa9.54□□□□□ -0.88
VARS-223ENST00000474643 H3BRM9 83 aa9.54□□□□□ -0.88
VARS-223ENST00000474643 C3orf79P0CE67 100 aa9.54□□□□□ -0.88
VARS-223ENST00000474643 RPL18AQ02543 176 aaKnown RBP9.54□□□□□ -0.88
VARS-223ENST00000474643 GAGE2BQ13066 116 aa9.54□□□□□ -0.88
VARS-223ENST00000474643 MRPL35Q9NZE8 188 aaKnown RBP9.54□□□□□ -0.88
VARS-223ENST00000474643 CDKN2A-AS1Q9UH64 79 aa9.54□□□□□ -0.88
VARS-223ENST00000474643 C20orf202A1L168 122 aa9.53□□□□□ -0.88
VARS-223ENST00000474643 DPM2O94777 84 aa9.53□□□□□ -0.88
VARS-223ENST00000474643 CKS1BP61024 79 aa9.53□□□□□ -0.88
VARS-223ENST00000474643 C6orf226Q5I0X4 101 aa9.53□□□□□ -0.88
VARS-223ENST00000474643 UNQ6190/PRO20217Q6UXQ8 127 aa9.52□□□□□ -0.89
VARS-223ENST00000474643 LOC105371267A0A1B0GV96 52 aa9.51□□□□□ -0.89
VARS-223ENST00000474643 C11orf86A6NJI1 115 aa9.51□□□□□ -0.89
VARS-223ENST00000474643 KRTDAPP60985 99 aa9.51□□□□□ -0.89
VARS-223ENST00000474643 PRR3P79522 188 aaKnown RBP9.51□□□□□ -0.89
VARS-223ENST00000474643 RNF151Q2KHN1 245 aa9.51□□□□□ -0.89
VARS-223ENST00000474643 IGKCP01834 107 aa9.5□□□□□ -0.89
VARS-223ENST00000474643 ZNF22P17026 224 aaPredicted RBP9.5□□□□□ -0.89
VARS-223ENST00000474643 PTTG1IPP53801 180 aa9.5□□□□□ -0.89
VARS-223ENST00000474643 KIAA0087Q14695 138 aa9.5□□□□□ -0.89
VARS-223ENST00000474643 C10orf25Q5T742 122 aa9.5□□□□□ -0.89
VARS-223ENST00000474643 C2orf82Q6UX34 121 aa9.5□□□□□ -0.89
VARS-223ENST00000474643 H0Y8G0 127 aa9.49□□□□□ -0.89
VARS-223ENST00000474643 Q8IZM0 81 aa9.49□□□□□ -0.89
VARS-223ENST00000474643 IGLV5-39A0A0G2JS06 123 aa9.48□□□□□ -0.89
VARS-223ENST00000474643 SMIM1B2RUZ4 78 aa9.48□□□□□ -0.89
VARS-223ENST00000474643 SPINK8P0C7L1 97 aa9.48□□□□□ -0.89
VARS-223ENST00000474643 SFTA2Q6UW10 78 aa9.48□□□□□ -0.89
VARS-223ENST00000474643 C6orf48Q9UBA6 75 aa9.48□□□□□ -0.89
VARS-223ENST00000474643 TRBV30A0A0K0K1B3 111 aa9.47□□□□□ -0.89
VARS-223ENST00000474643 TMEM170BQ5T4T1 132 aa9.47□□□□□ -0.89
VARS-223ENST00000474643 REG3GQ6UW15 175 aa9.47□□□□□ -0.89
VARS-223ENST00000474643 TMEM223A0PJW6 202 aa9.46□□□□□ -0.9
VARS-223ENST00000474643 CXCL5P42830 114 aa9.46□□□□□ -0.9
VARS-223ENST00000474643 Q6ZRP5 223 aa9.46□□□□□ -0.9
VARS-223ENST00000474643 COX7B2Q8TF08 81 aa9.46□□□□□ -0.9
VARS-223ENST00000474643 HERVK_113P61574 105 aa9.45□□□□□ -0.9
VARS-223ENST00000474643 GAGE2EQ4V326 116 aa9.45□□□□□ -0.9
VARS-223ENST00000474643 GAGE2DQ9UEU5 116 aa9.45□□□□□ -0.9
VARS-223ENST00000474643 MT1HL1P0DM35 61 aa9.44□□□□□ -0.9
VARS-223ENST00000474643 TLX1NBP0CAT3 122 aa9.43□□□□□ -0.9
VARS-223ENST00000474643 C9orf116Q5BN46 136 aaPredicted RBP9.43□□□□□ -0.9
VARS-223ENST00000474643 SPINK6Q6UWN8 80 aa9.43□□□□□ -0.9
VARS-223ENST00000474643 PMCHL2Q9BQD1 86 aa9.43□□□□□ -0.9
VARS-223ENST00000474643 NDUFC2-KCTD14E9PQ53 114 aa9.42□□□□□ -0.9
VARS-223ENST00000474643 JOSD1Q15040 202 aaPredicted RBP9.42□□□□□ -0.9
VARS-223ENST00000474643 E9PLD3 99 aa9.41□□□□□ -0.9
VARS-223ENST00000474643 PLEKHB2Q96CS7 222 aa9.41□□□□□ -0.9
VARS-223ENST00000474643 HMCN2Q8NDA2 5059 aa9.41□□□□□ -0.9
VARS-223ENST00000474643 A0A1W2PNN7 141 aa9.4□□□□□ -0.9
VARS-223ENST00000474643 LEPROTO15243 131 aa9.4□□□□□ -0.9
VARS-223ENST00000474643 NMUP48645 174 aa9.4□□□□□ -0.9
VARS-223ENST00000474643 SCGB1D1O95968 90 aa9.39□□□□□ -0.91
VARS-223ENST00000474643 FAM19A5Q7Z5A7 132 aaPredicted RBP9.39□□□□□ -0.91
VARS-223ENST00000474643 LINC01600Q96MT4 127 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms