RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 M0R036 132 aa1.35□□□□□ -2.19
VPS13A-210ENST00000471439 M0R381 172 aa1.35□□□□□ -2.19
VPS13A-210ENST00000471439 CCL25O15444 150 aa1.35□□□□□ -2.19
VPS13A-210ENST00000471439 HYPMO75409 117 aa1.35□□□□□ -2.19
VPS13A-210ENST00000471439 TCRAP04437 139 aa1.35□□□□□ -2.19
VPS13A-210ENST00000471439 LINC00614P0C842 121 aa1.35□□□□□ -2.19
VPS13A-210ENST00000471439 RNASE3P12724 160 aaKnown RBP1.35□□□□□ -2.19
VPS13A-210ENST00000471439 HIST1H1DP16402 221 aaKnown RBP1.35□□□□□ -2.19
VPS13A-210ENST00000471439 CASQ1P31415 396 aa1.35□□□□□ -2.19
VPS13A-210ENST00000471439 CSN1S1P47710 185 aa1.35□□□□□ -2.19
VPS13A-210ENST00000471439 GNG11P61952 73 aa1.35□□□□□ -2.19
VPS13A-210ENST00000471439 TMEM97Q5BJF2 176 aa1.35□□□□□ -2.19
VPS13A-210ENST00000471439 PATE2Q6UY27 113 aa1.35□□□□□ -2.19
VPS13A-210ENST00000471439 SPATA24Q86W54 205 aa1.35□□□□□ -2.19
VPS13A-210ENST00000471439 CYGBQ8WWM9 190 aa1.35□□□□□ -2.19
VPS13A-210ENST00000471439 ASB13Q8WXK3 278 aa1.35□□□□□ -2.19
VPS13A-210ENST00000471439 DIRAS2Q96HU8 199 aa1.35□□□□□ -2.19
VPS13A-210ENST00000471439 EIF5A2Q9GZV4 153 aaKnown RBP1.35□□□□□ -2.19
VPS13A-210ENST00000471439 LOC107984156A0A0G2JMH3 177 aa1.34□□□□□ -2.19
VPS13A-210ENST00000471439 FAM107AO95990 144 aa1.34□□□□□ -2.19
VPS13A-210ENST00000471439 HIST1H1EP10412 219 aaKnown RBP1.34□□□□□ -2.19
VPS13A-210ENST00000471439 ATP6V0CP27449 155 aa1.34□□□□□ -2.19
VPS13A-210ENST00000471439 ZNF80P51504 273 aaPredicted RBP1.34□□□□□ -2.19
VPS13A-210ENST00000471439 TAS2R45P59539 299 aa1.34□□□□□ -2.19
VPS13A-210ENST00000471439 RPS25P62851 125 aaKnown RBP1.34□□□□□ -2.19
VPS13A-210ENST00000471439 JOSD1Q15040 202 aaPredicted RBP1.34□□□□□ -2.19
VPS13A-210ENST00000471439 CCDC58Q4VC31 144 aa1.34□□□□□ -2.19
VPS13A-210ENST00000471439 KRTAP19-3Q7Z4W3 81 aa1.34□□□□□ -2.19
VPS13A-210ENST00000471439 BPIFA4PQ86YQ2 179 aa1.34□□□□□ -2.19
VPS13A-210ENST00000471439 ARL17AQ8IVW1 177 aa1.34□□□□□ -2.19
VPS13A-210ENST00000471439 SREK1IP1Q8N9Q2 155 aaPredicted RBP1.34□□□□□ -2.19
VPS13A-210ENST00000471439 SMIM19Q96E16 107 aa1.34□□□□□ -2.19
VPS13A-210ENST00000471439 ZNF625Q96I27 306 aaPredicted RBP1.34□□□□□ -2.19
VPS13A-210ENST00000471439 Q9BRP9 147 aa1.34□□□□□ -2.19
VPS13A-210ENST00000471439 MND1Q9BWT6 205 aa1.34□□□□□ -2.19
VPS13A-210ENST00000471439 MRPL35Q9NZE8 188 aaKnown RBP1.34□□□□□ -2.19
VPS13A-210ENST00000471439 CEBPZOSA8MTT3 80 aa1.33□□□□□ -2.2
VPS13A-210ENST00000471439 MT1XP80297 61 aa1.33□□□□□ -2.2
VPS13A-210ENST00000471439 SAPCD1Q5SSQ6 148 aa1.33□□□□□ -2.2
VPS13A-210ENST00000471439 SSBP3-AS1Q7Z2R9 100 aa1.33□□□□□ -2.2
VPS13A-210ENST00000471439 BORCS5Q969J3 196 aa1.33□□□□□ -2.2
VPS13A-210ENST00000471439 HOPXQ9BPY8 73 aaPredicted RBP1.33□□□□□ -2.2
VPS13A-210ENST00000471439 NKX6-2Q9C056 277 aaPredicted RBP1.33□□□□□ -2.2
VPS13A-210ENST00000471439 IL36BQ9NZH7 164 aa1.33□□□□□ -2.2
VPS13A-210ENST00000471439 TRAV21A0A0B4J279 112 aa1.32□□□□□ -2.2
VPS13A-210ENST00000471439 HPGDSO60760 199 aa1.32□□□□□ -2.2
VPS13A-210ENST00000471439 IZUMO2Q6UXV1 221 aa1.32□□□□□ -2.2
VPS13A-210ENST00000471439 LINC00305Q7Z4B0 112 aa1.32□□□□□ -2.2
VPS13A-210ENST00000471439 Q86TA4 180 aa1.32□□□□□ -2.2
VPS13A-210ENST00000471439 SFRP2Q96HF1 295 aa1.32□□□□□ -2.2
VPS13A-210ENST00000471439 PACRGQ96M98 296 aaPredicted RBP1.32□□□□□ -2.2
VPS13A-210ENST00000471439 PRO2289Q9P1D8 64 aa1.32□□□□□ -2.2
VPS13A-210ENST00000471439 C6orf48Q9UBA6 75 aa1.32□□□□□ -2.2
VPS13A-210ENST00000471439 PRELID1Q9Y255 219 aa1.32□□□□□ -2.2
VPS13A-210ENST00000471439 LINC00959A0A1B0GUT2 108 aa1.31□□□□□ -2.2
VPS13A-210ENST00000471439 GRIFINA4D1Z8 144 aa1.31□□□□□ -2.2
VPS13A-210ENST00000471439 UBE2L6O14933 153 aa1.31□□□□□ -2.2
VPS13A-210ENST00000471439 IL5P05113 134 aa1.31□□□□□ -2.2
VPS13A-210ENST00000471439 NKX2-5P52952 324 aaPredicted RBP1.31□□□□□ -2.2
VPS13A-210ENST00000471439 FABP5Q01469 135 aa1.31□□□□□ -2.2
VPS13A-210ENST00000471439 UNQ6190/PRO20217Q6UXQ8 127 aa1.31□□□□□ -2.2
VPS13A-210ENST00000471439 CYP2G1PQ6ZSU1 146 aa1.31□□□□□ -2.2
VPS13A-210ENST00000471439 U3KQ87 197 aa1.31□□□□□ -2.2
VPS13A-210ENST00000471439 TRBV19A0A075B6N1 114 aa1.3□□□□□ -2.2
VPS13A-210ENST00000471439 F6UZH7 168 aa1.3□□□□□ -2.2
VPS13A-210ENST00000471439 HINT1P49773 126 aaPredicted RBP1.3□□□□□ -2.2
VPS13A-210ENST00000471439 TAS2R30P59541 319 aa1.3□□□□□ -2.2
VPS13A-210ENST00000471439 SPAG11BQ08648 103 aa1.3□□□□□ -2.2
VPS13A-210ENST00000471439 S100A7AQ86SG5 101 aa1.3□□□□□ -2.2
VPS13A-210ENST00000471439 MIEN1Q9BRT3 115 aa1.3□□□□□ -2.2
VPS13A-210ENST00000471439 TIMM21Q9BVV7 248 aa1.3□□□□□ -2.2
VPS13A-210ENST00000471439 TTTY13Q9BZ97 58 aa1.3□□□□□ -2.2
VPS13A-210ENST00000471439 CTNNBIP1Q9NSA3 81 aaPredicted RBP1.3□□□□□ -2.2
VPS13A-210ENST00000471439 NDUFB11Q9NX14 153 aa1.3□□□□□ -2.2
VPS13A-210ENST00000471439 NKIRAS1Q9NYS0 192 aa1.3□□□□□ -2.2
VPS13A-210ENST00000471439 J3QQQ9 107 aa1.29□□□□□ -2.2
VPS13A-210ENST00000471439 NDUFA1O15239 70 aa1.29□□□□□ -2.2
VPS13A-210ENST00000471439 PPP1R1AQ13522 171 aa1.29□□□□□ -2.2
VPS13A-210ENST00000471439 CANT1Q8WVQ1 401 aa1.29□□□□□ -2.2
VPS13A-210ENST00000471439 LIMD2Q9BT23 127 aa1.29□□□□□ -2.2
VPS13A-210ENST00000471439 FXYD6Q9H0Q3 95 aa1.29□□□□□ -2.2
VPS13A-210ENST00000471439 LENEPQ9Y5L5 61 aa1.29□□□□□ -2.2
VPS13A-210ENST00000471439 COX7A2LO14548 114 aa1.28□□□□□ -2.2
VPS13A-210ENST00000471439 GNGT2O14610 69 aa1.28□□□□□ -2.2
VPS13A-210ENST00000471439 RAB4BP61018 213 aa1.28□□□□□ -2.2
VPS13A-210ENST00000471439 AKR1C1Q04828 323 aa1.28□□□□□ -2.2
VPS13A-210ENST00000471439 IFT20Q8IY31 132 aa1.28□□□□□ -2.2
VPS13A-210ENST00000471439 SMCR5Q8TEV8 140 aa1.28□□□□□ -2.2
VPS13A-210ENST00000471439 DNAJC9Q8WXX5 260 aa1.28□□□□□ -2.2
VPS13A-210ENST00000471439 CCDC32Q9BV29 185 aa1.28□□□□□ -2.2
VPS13A-210ENST00000471439 TIMM9Q9Y5J7 89 aa1.28□□□□□ -2.2
VPS13A-210ENST00000471439 TMSB15BA0A087X1C1 80 aa1.27□□□□□ -2.21
VPS13A-210ENST00000471439 PHGR1C9JFL3 82 aa1.27□□□□□ -2.21
VPS13A-210ENST00000471439 GNG2P59768 71 aa1.27□□□□□ -2.21
VPS13A-210ENST00000471439 ZNF56Q15929 161 aa1.27□□□□□ -2.21
VPS13A-210ENST00000471439 C1orf195Q5TG92 126 aa1.27□□□□□ -2.21
VPS13A-210ENST00000471439 HRCT1Q6UXD1 115 aa1.27□□□□□ -2.21
VPS13A-210ENST00000471439 BTF3L4Q96K17 158 aa1.27□□□□□ -2.21
VPS13A-210ENST00000471439 TP53RKQ96S44 253 aa1.27□□□□□ -2.21
VPS13A-210ENST00000471439 SLC25A21Q9BQT8 299 aaPredicted RBP1.27□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms