RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 K7EMI3 77 aa12.57□□□□□ -0.4
COL9A3-207ENST00000467819 CTDSP1Q9GZU7 261 aa12.57□□□□□ -0.4
COL9A3-207ENST00000467819 GEMIN7Q9H840 131 aaKnown RBP12.57□□□□□ -0.4
COL9A3-207ENST00000467819 NXT2Q9NPJ8 142 aaKnown RBP12.57□□□□□ -0.4
COL9A3-207ENST00000467819 NUPR1O60356 82 aa12.56□□□□□ -0.4
COL9A3-207ENST00000467819 SEC11AP67812 179 aa12.56□□□□□ -0.4
COL9A3-207ENST00000467819 LBHQ53QV2 105 aaPredicted RBP12.56□□□□□ -0.4
COL9A3-207ENST00000467819 F8VRH5 84 aa12.55□□□□□ -0.4
COL9A3-207ENST00000467819 PAPPA-AS1Q5QFB9 102 aa12.55□□□□□ -0.4
COL9A3-207ENST00000467819 CARHSP1Q9Y2V2 147 aaKnown RBP12.55□□□□□ -0.4
COL9A3-207ENST00000467819 TIMM17AQ99595 171 aa12.53□□□□□ -0.4
COL9A3-207ENST00000467819 KIAA1644Q3SXP7 199 aa12.52□□□□□ -0.41
COL9A3-207ENST00000467819 MRPL55Q7Z7F7 128 aaKnown RBP12.52□□□□□ -0.41
COL9A3-207ENST00000467819 TOMM6Q96B49 74 aa12.52□□□□□ -0.41
COL9A3-207ENST00000467819 G0S2P27469 103 aa12.51□□□□□ -0.41
COL9A3-207ENST00000467819 CXCL5P42830 114 aa12.5□□□□□ -0.41
COL9A3-207ENST00000467819 TP73-AS1Q9UF72 201 aa12.5□□□□□ -0.41
COL9A3-207ENST00000467819 SMIM1B2RUZ4 78 aa12.49□□□□□ -0.41
COL9A3-207ENST00000467819 TSPAN13O95857 204 aa12.49□□□□□ -0.41
COL9A3-207ENST00000467819 RAB14P61106 215 aa12.49□□□□□ -0.41
COL9A3-207ENST00000467819 SCGB3A1Q96QR1 104 aa12.49□□□□□ -0.41
COL9A3-207ENST00000467819 BCE1O60756 84 aa12.48□□□□□ -0.41
COL9A3-207ENST00000467819 RPL28P46779 137 aaKnown RBP12.48□□□□□ -0.41
COL9A3-207ENST00000467819 ERASQ7Z444 233 aa12.48□□□□□ -0.41
COL9A3-207ENST00000467819 RPL37AP8A6NKH3 93 aa12.47□□□□□ -0.41
COL9A3-207ENST00000467819 ADCYAP1P18509 176 aa12.47□□□□□ -0.41
COL9A3-207ENST00000467819 COX7B2Q8TF08 81 aa12.47□□□□□ -0.41
COL9A3-207ENST00000467819 LINC00167Q96N53 147 aa12.47□□□□□ -0.41
COL9A3-207ENST00000467819 A0A087X002 238 aa12.46□□□□□ -0.41
COL9A3-207ENST00000467819 MUC2Q02817 5179 aa12.45□□□□□ -0.42
COL9A3-207ENST00000467819 TINCRA0A1B0GVN0 87 aa12.45□□□□□ -0.42
COL9A3-207ENST00000467819 GAGE10A6NGK3 116 aa12.45□□□□□ -0.42
COL9A3-207ENST00000467819 PDZD11Q5EBL8 140 aa12.45□□□□□ -0.42
COL9A3-207ENST00000467819 SPINK8P0C7L1 97 aa12.43□□□□□ -0.42
COL9A3-207ENST00000467819 RAB5BP61020 215 aa12.43□□□□□ -0.42
COL9A3-207ENST00000467819 IGLV5-45A0A087WSX0 123 aa12.42□□□□□ -0.42
COL9A3-207ENST00000467819 CRYGAP11844 174 aa12.42□□□□□ -0.42
COL9A3-207ENST00000467819 TYMSOSQ8TAI1 123 aa12.42□□□□□ -0.42
COL9A3-207ENST00000467819 NKAPP1Q8N9T2 125 aa12.4□□□□□ -0.42
COL9A3-207ENST00000467819 CST9LQ9H4G1 147 aa12.4□□□□□ -0.42
COL9A3-207ENST00000467819 ANAPC11Q9NYG5 84 aa12.4□□□□□ -0.42
COL9A3-207ENST00000467819 IGLV5-37A0A075B6J1 123 aa12.38□□□□□ -0.43
COL9A3-207ENST00000467819 TRAV9-1A0A075B6T8 112 aa12.38□□□□□ -0.43
COL9A3-207ENST00000467819 UBE2AP49459 152 aa12.38□□□□□ -0.43
COL9A3-207ENST00000467819 LINC01546A6NGU7 62 aa12.37□□□□□ -0.43
COL9A3-207ENST00000467819 LINC01549A6NIU2 74 aa12.37□□□□□ -0.43
COL9A3-207ENST00000467819 SCO1O75880 301 aa12.36□□□□□ -0.43
COL9A3-207ENST00000467819 PMVKQ15126 192 aa12.36□□□□□ -0.43
COL9A3-207ENST00000467819 CLLU1Q5K131 121 aa12.36□□□□□ -0.43
COL9A3-207ENST00000467819 GNB1LQ9BYB4 327 aa12.36□□□□□ -0.43
COL9A3-207ENST00000467819 IGKV2-28A0A075B6P5 120 aa12.35□□□□□ -0.43
COL9A3-207ENST00000467819 IGKV2D-28P01615 120 aa12.35□□□□□ -0.43
COL9A3-207ENST00000467819 FA2HQ7L5A8 372 aa12.35□□□□□ -0.43
COL9A3-207ENST00000467819 KRTAP13-1Q8IUC0 172 aa12.35□□□□□ -0.43
COL9A3-207ENST00000467819 H3BRM9 83 aa12.34□□□□□ -0.43
COL9A3-207ENST00000467819 ATP5LO75964 103 aa12.34□□□□□ -0.43
COL9A3-207ENST00000467819 S100PP25815 95 aa12.34□□□□□ -0.43
COL9A3-207ENST00000467819 KRTAP13-2Q52LG2 175 aa12.34□□□□□ -0.43
COL9A3-207ENST00000467819 MRPL18Q9H0U6 180 aaKnown RBP12.34□□□□□ -0.43
COL9A3-207ENST00000467819 SMCO4Q9NRQ5 59 aa12.34□□□□□ -0.43
COL9A3-207ENST00000467819 TMEM218A2RU14 115 aa12.33□□□□□ -0.44
COL9A3-207ENST00000467819 PFN2P35080 140 aa12.33□□□□□ -0.44
COL9A3-207ENST00000467819 UQCC3Q6UW78 93 aa12.31□□□□□ -0.44
COL9A3-207ENST00000467819 FABP9Q0Z7S8 132 aa12.3□□□□□ -0.44
COL9A3-207ENST00000467819 RETNLBQ9BQ08 111 aa12.3□□□□□ -0.44
COL9A3-207ENST00000467819 A0A0U1RQV1 116 aa12.29□□□□□ -0.44
COL9A3-207ENST00000467819 IGLC3P0DOY3 106 aa12.29□□□□□ -0.44
COL9A3-207ENST00000467819 NDUFA6P56556 154 aa12.29□□□□□ -0.44
COL9A3-207ENST00000467819 PRLHP81277 87 aa12.29□□□□□ -0.44
COL9A3-207ENST00000467819 IGLV5-39A0A0G2JS06 123 aa12.28□□□□□ -0.44
COL9A3-207ENST00000467819 FAM229BQ4G0N7 80 aa12.28□□□□□ -0.44
COL9A3-207ENST00000467819 VPREB1P12018 145 aa12.27□□□□□ -0.45
COL9A3-207ENST00000467819 COX19Q49B96 90 aa12.27□□□□□ -0.45
COL9A3-207ENST00000467819 FAM19A1Q7Z5A9 133 aa12.27□□□□□ -0.45
COL9A3-207ENST00000467819 LINC00304Q8N9R0 145 aa12.27□□□□□ -0.45
COL9A3-207ENST00000467819 SND1-IT1Q9HBX3 110 aa12.27□□□□□ -0.45
COL9A3-207ENST00000467819 TMEM238C9JI98 176 aa12.26□□□□□ -0.45
COL9A3-207ENST00000467819 ZNF22P17026 224 aaPredicted RBP12.26□□□□□ -0.45
COL9A3-207ENST00000467819 SEC11CQ9BY50 192 aa12.26□□□□□ -0.45
COL9A3-207ENST00000467819 ERG28Q9UKR5 140 aa12.26□□□□□ -0.45
COL9A3-207ENST00000467819 A0A096LNJ9 63 aa12.25□□□□□ -0.45
COL9A3-207ENST00000467819 ZNF625Q96I27 306 aaPredicted RBP12.25□□□□□ -0.45
COL9A3-207ENST00000467819 TMEM126AQ9H061 195 aa12.25□□□□□ -0.45
COL9A3-207ENST00000467819 IGKV2D-26A0A0A0MRZ7 120 aa12.24□□□□□ -0.45
COL9A3-207ENST00000467819 RPL24P83731 157 aaKnown RBP12.22□□□□□ -0.45
COL9A3-207ENST00000467819 Q8NDZ9 215 aa12.21□□□□□ -0.45
COL9A3-207ENST00000467819 URB1-AS1Q96HZ7 61 aa12.21□□□□□ -0.45
COL9A3-207ENST00000467819 M0R378 163 aa12.2□□□□□ -0.46
COL9A3-207ENST00000467819 IFITM2Q01629 132 aa12.2□□□□□ -0.46
COL9A3-207ENST00000467819 COX17Q14061 63 aa12.2□□□□□ -0.46
COL9A3-207ENST00000467819 PMCHL1Q16048 86 aa12.2□□□□□ -0.46
COL9A3-207ENST00000467819 HBDP02042 147 aa12.19□□□□□ -0.46
COL9A3-207ENST00000467819 RPS10P5Q9NQ39 176 aa12.19□□□□□ -0.46
COL9A3-207ENST00000467819 C11orf86A6NJI1 115 aa12.18□□□□□ -0.46
COL9A3-207ENST00000467819 LINC00614P0C842 121 aa12.18□□□□□ -0.46
COL9A3-207ENST00000467819 TMEM170BQ5T4T1 132 aa12.18□□□□□ -0.46
COL9A3-207ENST00000467819 C18orf32Q8TCD1 76 aa12.18□□□□□ -0.46
COL9A3-207ENST00000467819 MUC17Q685J3 4493 aa12.18□□□□□ -0.46
COL9A3-207ENST00000467819 RHEBQ15382 184 aa12.17□□□□□ -0.46
COL9A3-207ENST00000467819 COMMD7Q86VX2 200 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 87.8 ms