RNA–Protein interactions for RNA: ENST00000460569.1

UPF2-204, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF2, Length 640 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-204ENST00000460569 STPG4Q8N801 248 aa6.6□□□□□ -1.35
UPF2-204ENST00000460569 C16orf90A8MZG2 172 aa6.59□□□□□ -1.35
UPF2-204ENST00000460569 LEPROTO15243 131 aa6.59□□□□□ -1.35
UPF2-204ENST00000460569 C10orf25Q5T742 122 aa6.59□□□□□ -1.35
UPF2-204ENST00000460569 C9orf163Q8N9P6 203 aa6.59□□□□□ -1.35
UPF2-204ENST00000460569 PLEKHB2Q96CS7 222 aa6.59□□□□□ -1.35
UPF2-204ENST00000460569 E9PLD3 99 aa6.58□□□□□ -1.36
UPF2-204ENST00000460569 LGALS3P17931 250 aaKnown RBP6.58□□□□□ -1.36
UPF2-204ENST00000460569 GCSHP23434 173 aa6.58□□□□□ -1.36
UPF2-204ENST00000460569 TSPEAR-AS2P59090 65 aa6.58□□□□□ -1.36
UPF2-204ENST00000460569 C6orf48Q9UBA6 75 aa6.58□□□□□ -1.36
UPF2-204ENST00000460569 PKD1P98161 4303 aa6.58□□□□□ -1.36
UPF2-204ENST00000460569 TRBV30A0A0K0K1B3 111 aa6.57□□□□□ -1.36
UPF2-204ENST00000460569 HSBP1L1C9JCN9 74 aa6.57□□□□□ -1.36
UPF2-204ENST00000460569 J3QQQ9 107 aa6.57□□□□□ -1.36
UPF2-204ENST00000460569 JOSD1Q15040 202 aaPredicted RBP6.57□□□□□ -1.36
UPF2-204ENST00000460569 NDUFA12Q9UI09 145 aa6.57□□□□□ -1.36
UPF2-204ENST00000460569 RNF151Q2KHN1 245 aa6.56□□□□□ -1.36
UPF2-204ENST00000460569 MAJINQ3KP22 176 aa6.56□□□□□ -1.36
UPF2-204ENST00000460569 ANKRD39Q53RE8 183 aa6.56□□□□□ -1.36
UPF2-204ENST00000460569 C9orf116Q5BN46 136 aaPredicted RBP6.56□□□□□ -1.36
UPF2-204ENST00000460569 SFTA2Q6UW10 78 aa6.56□□□□□ -1.36
UPF2-204ENST00000460569 ZNF625Q96I27 306 aaPredicted RBP6.56□□□□□ -1.36
UPF2-204ENST00000460569 PKIGQ9Y2B9 76 aa6.56□□□□□ -1.36
UPF2-204ENST00000460569 IGKV2D-26A0A0A0MRZ7 120 aa6.55□□□□□ -1.36
UPF2-204ENST00000460569 LOC107984640A0A0U1RRK4 108 aa6.55□□□□□ -1.36
UPF2-204ENST00000460569 NMUP48645 174 aa6.55□□□□□ -1.36
UPF2-204ENST00000460569 KRTAP10-1P60331 282 aa6.55□□□□□ -1.36
UPF2-204ENST00000460569 RPL18AQ02543 176 aaKnown RBP6.55□□□□□ -1.36
UPF2-204ENST00000460569 DNAH11Q96DT5 4516 aa6.55□□□□□ -1.36
UPF2-204ENST00000460569 HECTD4Q9Y4D8 3996 aa6.54□□□□□ -1.36
UPF2-204ENST00000460569 MYMXA0A1B0GTQ4 84 aa6.54□□□□□ -1.36
UPF2-204ENST00000460569 PYY3Q5JQD4 70 aa6.54□□□□□ -1.36
UPF2-204ENST00000460569 A0A096LNI7 61 aa6.53□□□□□ -1.36
UPF2-204ENST00000460569 IGKV2-24A0A0C4DH68 120 aa6.53□□□□□ -1.36
UPF2-204ENST00000460569 HERV-K104P63124 156 aa6.53□□□□□ -1.36
UPF2-204ENST00000460569 GAGE2BQ13066 116 aa6.53□□□□□ -1.36
UPF2-204ENST00000460569 MEIG1Q5JSS6 88 aa6.53□□□□□ -1.36
UPF2-204ENST00000460569 SDIM1Q6ZPB5 146 aa6.53□□□□□ -1.36
UPF2-204ENST00000460569 VAMP8Q9BV40 100 aa6.53□□□□□ -1.36
UPF2-204ENST00000460569 TTTY13Q9BZ97 58 aa6.53□□□□□ -1.36
UPF2-204ENST00000460569 ERG28Q9UKR5 140 aa6.53□□□□□ -1.36
UPF2-204ENST00000460569 ZNF815PA8K554 130 aa6.52□□□□□ -1.37
UPF2-204ENST00000460569 NDUFC2-KCTD14E9PQ53 114 aa6.52□□□□□ -1.37
UPF2-204ENST00000460569 TLX1NBP0CAT3 122 aa6.52□□□□□ -1.37
UPF2-204ENST00000460569 CHTF8P0CG12 524 aa6.52□□□□□ -1.37
UPF2-204ENST00000460569 PFN2P35080 140 aa6.52□□□□□ -1.37
UPF2-204ENST00000460569 GAGE2EQ4V326 116 aa6.52□□□□□ -1.37
UPF2-204ENST00000460569 GAGE2DQ9UEU5 116 aa6.52□□□□□ -1.37
UPF2-204ENST00000460569 PAM16Q9Y3D7 125 aa6.52□□□□□ -1.37
UPF2-204ENST00000460569 A0A0U1RRA0 63 aa6.51□□□□□ -1.37
UPF2-204ENST00000460569 PTTG1IPP53801 180 aa6.51□□□□□ -1.37
UPF2-204ENST00000460569 SPATA45Q537H7 98 aa6.51□□□□□ -1.37
UPF2-204ENST00000460569 Q6ZRP5 223 aa6.51□□□□□ -1.37
UPF2-204ENST00000460569 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.51□□□□□ -1.37
UPF2-204ENST00000460569 A0A0J9YXY3 114 aa6.5□□□□□ -1.37
UPF2-204ENST00000460569 LOC105371267A0A1B0GV96 52 aa6.5□□□□□ -1.37
UPF2-204ENST00000460569 PANO1I0J062 215 aa6.5□□□□□ -1.37
UPF2-204ENST00000460569 SMIM13P0DJ93 91 aa6.5□□□□□ -1.37
UPF2-204ENST00000460569 LINC00158P58513 81 aa6.5□□□□□ -1.37
UPF2-204ENST00000460569 COX17Q14061 63 aa6.5□□□□□ -1.37
UPF2-204ENST00000460569 PCP2Q8IVA1 136 aa6.5□□□□□ -1.37
UPF2-204ENST00000460569 FAM30AQ9NZY2 134 aa6.5□□□□□ -1.37
UPF2-204ENST00000460569 DNAH5Q8TE73 4624 aa6.49□□□□□ -1.37
UPF2-204ENST00000460569 LINC00587B1AMM8 73 aa6.49□□□□□ -1.37
UPF2-204ENST00000460569 SCGB1D4Q6XE38 83 aa6.49□□□□□ -1.37
UPF2-204ENST00000460569 Q6ZSA8 131 aa6.49□□□□□ -1.37
UPF2-204ENST00000460569 SPACA4Q8TDM5 124 aa6.49□□□□□ -1.37
UPF2-204ENST00000460569 DPH3Q96FX2 82 aa6.49□□□□□ -1.37
UPF2-204ENST00000460569 XAGE1AQ9HD64 81 aa6.49□□□□□ -1.37
UPF2-204ENST00000460569 LINC00474Q9P2X8 69 aa6.49□□□□□ -1.37
UPF2-204ENST00000460569 PKHD1P08F94 4074 aa6.48□□□□□ -1.37
UPF2-204ENST00000460569 HAMPP81172 84 aa6.48□□□□□ -1.37
UPF2-204ENST00000460569 SMIM6P0DI80 62 aa6.47□□□□□ -1.37
UPF2-204ENST00000460569 CIRBPQ14011 172 aaKnown RBP6.47□□□□□ -1.37
UPF2-204ENST00000460569 C9orf129Q5T035 196 aaKnown RBP6.47□□□□□ -1.37
UPF2-204ENST00000460569 MIR7-3HGQ8N6C7 128 aa6.47□□□□□ -1.37
UPF2-204ENST00000460569 SND1-IT1Q9HBX3 110 aa6.47□□□□□ -1.37
UPF2-204ENST00000460569 A0A087WYN8 130 aa6.46□□□□□ -1.38
UPF2-204ENST00000460569 COX8AP10176 69 aa6.46□□□□□ -1.38
UPF2-204ENST00000460569 S100A12P80511 92 aa6.46□□□□□ -1.38
UPF2-204ENST00000460569 SCXQ7RTU7 201 aa6.46□□□□□ -1.38
UPF2-204ENST00000460569 DAND5Q8N907 189 aa6.46□□□□□ -1.38
UPF2-204ENST00000460569 C14orf144Q96I85 54 aa6.46□□□□□ -1.38
UPF2-204ENST00000460569 TP73-AS1Q9UF72 201 aa6.46□□□□□ -1.38
UPF2-204ENST00000460569 TMEM238C9JI98 176 aa6.45□□□□□ -1.38
UPF2-204ENST00000460569 TIMM17BO60830 172 aa6.45□□□□□ -1.38
UPF2-204ENST00000460569 FAM19A5Q7Z5A7 132 aaPredicted RBP6.45□□□□□ -1.38
UPF2-204ENST00000460569 BOD1L2Q8IYS8 172 aa6.45□□□□□ -1.38
UPF2-204ENST00000460569 CIRBP-AS1Q8TBR5 109 aa6.45□□□□□ -1.38
UPF2-204ENST00000460569 DYNC1H1Q14204 4646 aaKnown RBP6.44□□□□□ -1.38
UPF2-204ENST00000460569 A0A1W2PNN7 141 aa6.44□□□□□ -1.38
UPF2-204ENST00000460569 FAM168BA1KXE4 195 aa6.44□□□□□ -1.38
UPF2-204ENST00000460569 NPC2P61916 151 aa6.44□□□□□ -1.38
UPF2-204ENST00000460569 ADAMTSL4-AS1Q5T5F5 129 aa6.44□□□□□ -1.38
UPF2-204ENST00000460569 LCE2DQ5TA82 110 aaPredicted RBP6.44□□□□□ -1.38
UPF2-204ENST00000460569 SLC25A34Q6PIV7 304 aa6.44□□□□□ -1.38
UPF2-204ENST00000460569 LITAFQ99732 161 aa6.44□□□□□ -1.38
UPF2-204ENST00000460569 EPPK1P58107 5090 aaKnown RBP6.43□□□□□ -1.38
UPF2-204ENST00000460569 DLEU1O43261 78 aa6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms