RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 ARL17AQ8IVW1 177 aa4.12□□□□□ -1.75
VPS50-205ENST00000441602 LINC00308Q8TCZ7 52 aa4.12□□□□□ -1.75
VPS50-205ENST00000441602 LITAFQ99732 161 aa4.12□□□□□ -1.75
VPS50-205ENST00000441602 TRBV20-1A0A075B6N2 111 aa4.11□□□□□ -1.75
VPS50-205ENST00000441602 WFDC10BQ8IUB3 73 aa4.11□□□□□ -1.75
VPS50-205ENST00000441602 SVEP1Q4LDE5 3571 aa4.11□□□□□ -1.75
VPS50-205ENST00000441602 A0A0U1RRA0 63 aa4.11□□□□□ -1.75
VPS50-205ENST00000441602 F8WDY8 70 aa4.11□□□□□ -1.75
VPS50-205ENST00000441602 NAA38Q9BRA0 125 aaKnown RBP4.11□□□□□ -1.75
VPS50-205ENST00000441602 TRAV13-2A0A0B4J235 113 aa4.11□□□□□ -1.75
VPS50-205ENST00000441602 FOXI1Q12951 378 aa4.11□□□□□ -1.75
VPS50-205ENST00000441602 UBE2DNLQ8IWF7 75 aa4.11□□□□□ -1.75
VPS50-205ENST00000441602 ZNF561-AS1K7EIQ3 104 aa4.1□□□□□ -1.75
VPS50-205ENST00000441602 TSPAN13O95857 204 aa4.1□□□□□ -1.75
VPS50-205ENST00000441602 NPC2P61916 151 aa4.1□□□□□ -1.75
VPS50-205ENST00000441602 COX17Q14061 63 aa4.1□□□□□ -1.75
VPS50-205ENST00000441602 MIR7-3HGQ8N6C7 128 aa4.1□□□□□ -1.75
VPS50-205ENST00000441602 DNAH10OSP0CZ25 163 aa4.1□□□□□ -1.75
VPS50-205ENST00000441602 ADAMTSL4-AS1Q5T5F5 129 aa4.1□□□□□ -1.75
VPS50-205ENST00000441602 MAST4O15021 2626 aa4.1□□□□□ -1.75
VPS50-205ENST00000441602 H7C2G1 150 aa4.09□□□□□ -1.75
VPS50-205ENST00000441602 PFN2P35080 140 aa4.09□□□□□ -1.75
VPS50-205ENST00000441602 RPL13AP40429 203 aaKnown RBP4.09□□□□□ -1.75
VPS50-205ENST00000441602 ENHOQ6UWT2 76 aa4.09□□□□□ -1.75
VPS50-205ENST00000441602 IGKV2D-24A0A075B6R9 120 aa4.09□□□□□ -1.75
VPS50-205ENST00000441602 NUPR2A6NF83 97 aa4.09□□□□□ -1.75
VPS50-205ENST00000441602 DAND5Q8N907 189 aa4.09□□□□□ -1.76
VPS50-205ENST00000441602 SND1-IT1Q9HBX3 110 aa4.09□□□□□ -1.76
VPS50-205ENST00000441602 ATXN8Q156A1 80 aa4.08□□□□□ -1.76
VPS50-205ENST00000441602 KRTAP21-3Q3LHN1 58 aa4.08□□□□□ -1.76
VPS50-205ENST00000441602 Q8N3U1 123 aa4.08□□□□□ -1.76
VPS50-205ENST00000441602 UPK3BQ9BT76 320 aa4.08□□□□□ -1.76
VPS50-205ENST00000441602 STAB1Q9NY15 2570 aa4.08□□□□□ -1.76
VPS50-205ENST00000441602 TRBV30A0A0K0K1B3 111 aa4.08□□□□□ -1.76
VPS50-205ENST00000441602 C2orf48Q96LS8 159 aa4.08□□□□□ -1.76
VPS50-205ENST00000441602 CAMK2N2Q96S95 79 aa4.08□□□□□ -1.76
VPS50-205ENST00000441602 KIAA0087Q14695 138 aa4.07□□□□□ -1.76
VPS50-205ENST00000441602 LINC00588Q9Y4M8 146 aa4.07□□□□□ -1.76
VPS50-205ENST00000441602 GVQW2A0A096LPI5 108 aaPredicted RBP4.07□□□□□ -1.76
VPS50-205ENST00000441602 F8W1H4 67 aa4.07□□□□□ -1.76
VPS50-205ENST00000441602 C2orf82Q6UX34 121 aa4.07□□□□□ -1.76
VPS50-205ENST00000441602 Q9HAA7 133 aa4.07□□□□□ -1.76
VPS50-205ENST00000441602 CBY1Q9Y3M2 126 aa4.07□□□□□ -1.76
VPS50-205ENST00000441602 COL6A5A8TX70 2615 aa4.07□□□□□ -1.76
VPS50-205ENST00000441602 J3QR89 54 aa4.06□□□□□ -1.76
VPS50-205ENST00000441602 SNCGO76070 127 aa4.06□□□□□ -1.76
VPS50-205ENST00000441602 TTC32Q5I0X7 151 aa4.06□□□□□ -1.76
VPS50-205ENST00000441602 OR13C6PQ8NH95 151 aa4.06□□□□□ -1.76
VPS50-205ENST00000441602 TENM1Q9UKZ4 2725 aa4.06□□□□□ -1.76
VPS50-205ENST00000441602 NDUFC2O95298 119 aa4.06□□□□□ -1.76
VPS50-205ENST00000441602 NTN5Q8WTR8 489 aaPredicted RBP4.06□□□□□ -1.76
VPS50-205ENST00000441602 K7ERU9 68 aa4.05□□□□□ -1.76
VPS50-205ENST00000441602 SOSTDC1Q6X4U4 206 aa4.05□□□□□ -1.76
VPS50-205ENST00000441602 UNQ6190/PRO20217Q6UXQ8 127 aa4.05□□□□□ -1.76
VPS50-205ENST00000441602 NIPBLQ6KC79 2804 aaeCLIP4.04□□□□□ -1.76
VPS50-205ENST00000441602 SYCNQ0VAF6 134 aa4.04□□□□□ -1.76
VPS50-205ENST00000441602 HIGD2BQ4VC39 106 aa4.04□□□□□ -1.76
VPS50-205ENST00000441602 PKIGQ9Y2B9 76 aa4.04□□□□□ -1.76
VPS50-205ENST00000441602 H0YGX0 51 aa4.04□□□□□ -1.76
VPS50-205ENST00000441602 H3BMG7 143 aa4.04□□□□□ -1.76
VPS50-205ENST00000441602 TRIAP1O43715 76 aa4.04□□□□□ -1.76
VPS50-205ENST00000441602 C14orf177Q52M58 125 aa4.04□□□□□ -1.76
VPS50-205ENST00000441602 APLNQ9ULZ1 77 aa4.04□□□□□ -1.76
VPS50-205ENST00000441602 TCL1BO95988 128 aa4.04□□□□□ -1.76
VPS50-205ENST00000441602 S100A7L2Q5SY68 101 aa4.04□□□□□ -1.76
VPS50-205ENST00000441602 PSCAO43653 123 aa4.03□□□□□ -1.76
VPS50-205ENST00000441602 RNF151Q2KHN1 245 aa4.03□□□□□ -1.76
VPS50-205ENST00000441602 LINC01620Q4KN68 170 aa4.03□□□□□ -1.76
VPS50-205ENST00000441602 TMEM126AQ9H061 195 aa4.03□□□□□ -1.76
VPS50-205ENST00000441602 ZFHX3Q15911 3703 aa4.03□□□□□ -1.76
VPS50-205ENST00000441602 KRTAP26-1Q6PEX3 210 aa4.03□□□□□ -1.76
VPS50-205ENST00000441602 EIF4EBP3O60516 100 aaPredicted RBP4.02□□□□□ -1.77
VPS50-205ENST00000441602 RPL28P46779 137 aaKnown RBP4.02□□□□□ -1.77
VPS50-205ENST00000441602 C6orf223Q8N319 242 aa4.02□□□□□ -1.77
VPS50-205ENST00000441602 CARD19Q96LW7 228 aa4.02□□□□□ -1.77
VPS50-205ENST00000441602 TRBV10-2A0A0K0K1G8 114 aa4.02□□□□□ -1.77
VPS50-205ENST00000441602 C9JAW5 83 aa4.02□□□□□ -1.77
VPS50-205ENST00000441602 M0QXV9 152 aa4.02□□□□□ -1.77
VPS50-205ENST00000441602 H3BT86 120 aa4.02□□□□□ -1.77
VPS50-205ENST00000441602 DNAL4O96015 105 aa4.02□□□□□ -1.77
VPS50-205ENST00000441602 C15orf56Q8N910 161 aa4.02□□□□□ -1.77
VPS50-205ENST00000441602 C6orf48Q9UBA6 75 aa4.02□□□□□ -1.77
VPS50-205ENST00000441602 USP17L23D6RBM5 183 aa4.01□□□□□ -1.77
VPS50-205ENST00000441602 LST1O00453 97 aa4.01□□□□□ -1.77
VPS50-205ENST00000441602 SLC25A20O43772 301 aa4.01□□□□□ -1.77
VPS50-205ENST00000441602 TRACP01848 142 aa4.01□□□□□ -1.77
VPS50-205ENST00000441602 LINC00526Q96FQ7 95 aa4.01□□□□□ -1.77
VPS50-205ENST00000441602 NDUFC2-KCTD14E9PQ53 114 aa4.01□□□□□ -1.77
VPS50-205ENST00000441602 C10orf25Q5T742 122 aa4.01□□□□□ -1.77
VPS50-205ENST00000441602 LINC00337Q8N6G1 96 aa4.01□□□□□ -1.77
VPS50-205ENST00000441602 OCIAD2Q56VL3 154 aa4.01□□□□□ -1.77
VPS50-205ENST00000441602 C9orf116Q5BN46 136 aaPredicted RBP4.01□□□□□ -1.77
VPS50-205ENST00000441602 Q6ZRU5 148 aa4.01□□□□□ -1.77
VPS50-205ENST00000441602 VWFP04275 2813 aa4.01□□□□□ -1.77
VPS50-205ENST00000441602 MGAM2Q2M2H8 2515 aa4□□□□□ -1.77
VPS50-205ENST00000441602 IGKV2-28A0A075B6P5 120 aa4□□□□□ -1.77
VPS50-205ENST00000441602 A0A1B0GX51 115 aa4□□□□□ -1.77
VPS50-205ENST00000441602 IGKV2D-28P01615 120 aa4□□□□□ -1.77
VPS50-205ENST00000441602 WFDC2Q14508 124 aa4□□□□□ -1.77
VPS50-205ENST00000441602 ANKRD29Q8N6D5 301 aa4□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms