RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 SNURFQ9Y675 71 aa6.18□□□□□ -1.42
USP40-203ENST00000427112 STAB1Q9NY15 2570 aa6.18□□□□□ -1.42
USP40-203ENST00000427112 TMEM89A2RUT3 159 aa6.17□□□□□ -1.42
USP40-203ENST00000427112 GHRHP01286 108 aa6.17□□□□□ -1.42
USP40-203ENST00000427112 DAZ2Q13117 558 aaKnown RBP6.17□□□□□ -1.42
USP40-203ENST00000427112 DAZ4Q86SG3 579 aaKnown RBP6.17□□□□□ -1.42
USP40-203ENST00000427112 C11orf72Q8NBR9 251 aa6.17□□□□□ -1.42
USP40-203ENST00000427112 C14orf132Q9NPU4 83 aa6.17□□□□□ -1.42
USP40-203ENST00000427112 DAZ3Q9NR90 486 aaKnown RBP6.17□□□□□ -1.42
USP40-203ENST00000427112 COL6A5A8TX70 2615 aa6.17□□□□□ -1.42
USP40-203ENST00000427112 SPTSSBQ8NFR3 76 aa6.17□□□□□ -1.42
USP40-203ENST00000427112 CCL24O00175 119 aa6.16□□□□□ -1.42
USP40-203ENST00000427112 Q6YL49 198 aa6.16□□□□□ -1.42
USP40-203ENST00000427112 LINC00482Q8N8I6 264 aa6.16□□□□□ -1.42
USP40-203ENST00000427112 A8MTW9 85 aa6.16□□□□□ -1.42
USP40-203ENST00000427112 SMIM1B2RUZ4 78 aa6.16□□□□□ -1.42
USP40-203ENST00000427112 CRPP02741 224 aa6.16□□□□□ -1.42
USP40-203ENST00000427112 INAFM2P0DMQ5 153 aa6.16□□□□□ -1.42
USP40-203ENST00000427112 C9orf116Q5BN46 136 aaPredicted RBP6.16□□□□□ -1.42
USP40-203ENST00000427112 TRBV30A0A0K0K1B3 111 aa6.15□□□□□ -1.42
USP40-203ENST00000427112 NCR3O14931 201 aa6.15□□□□□ -1.42
USP40-203ENST00000427112 KLK9Q2XQG4 91 aa6.15□□□□□ -1.42
USP40-203ENST00000427112 LINC00643Q86TS7 51 aa6.15□□□□□ -1.43
USP40-203ENST00000427112 A0A087WYN8 130 aa6.14□□□□□ -1.43
USP40-203ENST00000427112 K7EQD1 137 aa6.14□□□□□ -1.43
USP40-203ENST00000427112 LST1O00453 97 aa6.14□□□□□ -1.43
USP40-203ENST00000427112 SMCR5Q8TEV8 140 aa6.14□□□□□ -1.43
USP40-203ENST00000427112 DNAJC9-AS1A6NH13 148 aa6.14□□□□□ -1.43
USP40-203ENST00000427112 COX7CP15954 63 aa6.14□□□□□ -1.43
USP40-203ENST00000427112 SND1-IT1Q9HBX3 110 aa6.14□□□□□ -1.43
USP40-203ENST00000427112 LECT2O14960 151 aa6.14□□□□□ -1.43
USP40-203ENST00000427112 C6orf226Q5I0X4 101 aa6.13□□□□□ -1.43
USP40-203ENST00000427112 LINC00337Q8N6G1 96 aa6.13□□□□□ -1.43
USP40-203ENST00000427112 NDUFC2O95298 119 aa6.13□□□□□ -1.43
USP40-203ENST00000427112 LRRC75A-AS1Q8N1F1 130 aa6.13□□□□□ -1.43
USP40-203ENST00000427112 SPATA3Q8NHX4 192 aa6.13□□□□□ -1.43
USP40-203ENST00000427112 SBSPONQ8IVN8 264 aa6.13□□□□□ -1.43
USP40-203ENST00000427112 MGAM2Q2M2H8 2515 aa6.12□□□□□ -1.43
USP40-203ENST00000427112 UBL5Q9BZL1 73 aa6.12□□□□□ -1.43
USP40-203ENST00000427112 PYGO1Q9Y3Y4 419 aa6.12□□□□□ -1.43
USP40-203ENST00000427112 NDUFA1O15239 70 aa6.12□□□□□ -1.43
USP40-203ENST00000427112 TMEM258P61165 79 aa6.12□□□□□ -1.43
USP40-203ENST00000427112 PRR4Q16378 134 aa6.12□□□□□ -1.43
USP40-203ENST00000427112 SCXQ7RTU7 201 aa6.12□□□□□ -1.43
USP40-203ENST00000427112 CDC42SE2Q9NRR3 84 aa6.12□□□□□ -1.43
USP40-203ENST00000427112 TIMM17BO60830 172 aa6.11□□□□□ -1.43
USP40-203ENST00000427112 TIRAPP58753 221 aa6.11□□□□□ -1.43
USP40-203ENST00000427112 USP17L23D6RBM5 183 aa6.11□□□□□ -1.43
USP40-203ENST00000427112 COPS9Q8WXC6 57 aa6.11□□□□□ -1.43
USP40-203ENST00000427112 SPANXDQ9BXN6 97 aa6.11□□□□□ -1.43
USP40-203ENST00000427112 SPANXCQ9NY87 97 aa6.11□□□□□ -1.43
USP40-203ENST00000427112 GYPEP15421 78 aa6.1□□□□□ -1.43
USP40-203ENST00000427112 SMIM11BQ8TCY0 68 aa6.1□□□□□ -1.43
USP40-203ENST00000427112 COX7B2Q8TF08 81 aa6.1□□□□□ -1.43
USP40-203ENST00000427112 DEFB113Q30KQ7 82 aa6.1□□□□□ -1.43
USP40-203ENST00000427112 MRPL55Q7Z7F7 128 aaKnown RBP6.1□□□□□ -1.43
USP40-203ENST00000427112 H3BT86 120 aa6.1□□□□□ -1.43
USP40-203ENST00000427112 C4orf3Q8WVX3 66 aa6.1□□□□□ -1.43
USP40-203ENST00000427112 A0A096LNT2 108 aa6.09□□□□□ -1.43
USP40-203ENST00000427112 COX7A2LO14548 114 aa6.09□□□□□ -1.43
USP40-203ENST00000427112 CCL18P55774 89 aa6.09□□□□□ -1.43
USP40-203ENST00000427112 ENHOQ6UWT2 76 aa6.09□□□□□ -1.43
USP40-203ENST00000427112 DEFB135Q30KP9 77 aa6.09□□□□□ -1.43
USP40-203ENST00000427112 ACYP1P07311 99 aa6.09□□□□□ -1.44
USP40-203ENST00000427112 LINC00269Q8N2A0 174 aa6.09□□□□□ -1.44
USP40-203ENST00000427112 IGKV2-28A0A075B6P5 120 aa6.08□□□□□ -1.44
USP40-203ENST00000427112 IGKV2D-28P01615 120 aa6.08□□□□□ -1.44
USP40-203ENST00000427112 PF4P02776 101 aa6.08□□□□□ -1.44
USP40-203ENST00000427112 GIG44P09565 113 aaPredicted RBP6.08□□□□□ -1.44
USP40-203ENST00000427112 SERP2Q8N6R1 65 aa6.08□□□□□ -1.44
USP40-203ENST00000427112 IL17DQ8TAD2 202 aa6.08□□□□□ -1.44
USP40-203ENST00000427112 TENM3Q9P273 2699 aa6.07□□□□□ -1.44
USP40-203ENST00000427112 NSD1Q96L73 2696 aaPredicted RBP6.07□□□□□ -1.44
USP40-203ENST00000427112 ANGP03950 147 aaKnown RBP6.07□□□□□ -1.44
USP40-203ENST00000427112 C6orf223Q8N319 242 aa6.07□□□□□ -1.44
USP40-203ENST00000427112 LINC01006Q8NI28 216 aa6.07□□□□□ -1.44
USP40-203ENST00000427112 HILS1P60008 231 aa6.07□□□□□ -1.44
USP40-203ENST00000427112 NANOS2P60321 138 aaKnown RBP6.07□□□□□ -1.44
USP40-203ENST00000427112 MALP21145 153 aa6.06□□□□□ -1.44
USP40-203ENST00000427112 RPL18AQ02543 176 aaKnown RBP6.06□□□□□ -1.44
USP40-203ENST00000427112 DSCR9P59020 149 aa6.05□□□□□ -1.44
USP40-203ENST00000427112 IGHV4-28A0A0C4DH34 117 aa6.05□□□□□ -1.44
USP40-203ENST00000427112 CXCL5P42830 114 aa6.05□□□□□ -1.44
USP40-203ENST00000427112 XAGE1AQ9HD64 81 aa6.05□□□□□ -1.44
USP40-203ENST00000427112 CSMD3Q7Z407 3707 aa6.05□□□□□ -1.44
USP40-203ENST00000427112 IGLV5-39A0A0G2JS06 123 aa6.05□□□□□ -1.44
USP40-203ENST00000427112 BEAN1Q3B7T3 259 aa6.05□□□□□ -1.44
USP40-203ENST00000427112 ZNF843Q8N446 348 aa6.05□□□□□ -1.44
USP40-203ENST00000427112 Q6Q795 121 aa6.04□□□□□ -1.44
USP40-203ENST00000427112 TRBV6-8A0A0A6YYG3 113 aa6.04□□□□□ -1.44
USP40-203ENST00000427112 LINC00336Q6ZUF6 198 aa6.04□□□□□ -1.44
USP40-203ENST00000427112 DPH3Q96FX2 82 aa6.04□□□□□ -1.44
USP40-203ENST00000427112 CYSTM1Q9H1C7 97 aa6.04□□□□□ -1.44
USP40-203ENST00000427112 LINC00846Q9NV44 126 aa6.04□□□□□ -1.44
USP40-203ENST00000427112 PRO0628Q9UI54 55 aa6.04□□□□□ -1.44
USP40-203ENST00000427112 F8WEM9 126 aa6.03□□□□□ -1.44
USP40-203ENST00000427112 FHL2Q14192 279 aa6.03□□□□□ -1.44
USP40-203ENST00000427112 FAM222AQ5U5X8 452 aa6.03□□□□□ -1.44
USP40-203ENST00000427112 UPK3BQ9BT76 320 aa6.03□□□□□ -1.44
USP40-203ENST00000427112 C22orf24Q9Y442 160 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 192.7 ms