RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 X6R8D5 127 aa9.34□□□□□ -0.91
VPS54-203ENST00000409558 CMC4P56277 68 aaPredicted RBP9.33□□□□□ -0.92
VPS54-203ENST00000409558 LINC00337Q8N6G1 96 aa9.33□□□□□ -0.92
VPS54-203ENST00000409558 C15orf53Q8NAA6 179 aa9.33□□□□□ -0.92
VPS54-203ENST00000409558 KMT2BQ9UMN6 2715 aaPredicted RBP9.33□□□□□ -0.92
VPS54-203ENST00000409558 PRO0255Q9UI72 69 aa9.32□□□□□ -0.92
VPS54-203ENST00000409558 IGLV5-45A0A087WSX0 123 aa9.32□□□□□ -0.92
VPS54-203ENST00000409558 IFITM1P13164 125 aa9.32□□□□□ -0.92
VPS54-203ENST00000409558 SS18Q15532 418 aa9.32□□□□□ -0.92
VPS54-203ENST00000409558 C3orf56Q8N813 242 aa9.32□□□□□ -0.92
VPS54-203ENST00000409558 CCL18P55774 89 aa9.32□□□□□ -0.92
VPS54-203ENST00000409558 KLK12Q9UKR0 248 aa9.32□□□□□ -0.92
VPS54-203ENST00000409558 LST1O00453 97 aa9.31□□□□□ -0.92
VPS54-203ENST00000409558 BAALC-AS2P0C853 105 aa9.31□□□□□ -0.92
VPS54-203ENST00000409558 IGHV3OR16-9A0A0B4J2B5 98 aa9.3□□□□□ -0.92
VPS54-203ENST00000409558 DNAL4O96015 105 aa9.3□□□□□ -0.92
VPS54-203ENST00000409558 OVOL2Q9BRP0 275 aa9.3□□□□□ -0.92
VPS54-203ENST00000409558 C6orf223Q8N319 242 aa9.3□□□□□ -0.92
VPS54-203ENST00000409558 CLUHP3Q96NS8 147 aa9.3□□□□□ -0.92
VPS54-203ENST00000409558 GAGE2AQ6NT46 116 aa9.29□□□□□ -0.92
VPS54-203ENST00000409558 GAGE2BQ13066 116 aa9.29□□□□□ -0.92
VPS54-203ENST00000409558 GAGE2EQ4V326 116 aa9.29□□□□□ -0.92
VPS54-203ENST00000409558 CFAP161Q6P656 301 aa9.29□□□□□ -0.92
VPS54-203ENST00000409558 ANAPC13Q9BS18 74 aa9.29□□□□□ -0.92
VPS54-203ENST00000409558 GAGE2DQ9UEU5 116 aa9.29□□□□□ -0.92
VPS54-203ENST00000409558 BAHCC1Q9P281 2608 aa9.28□□□□□ -0.92
VPS54-203ENST00000409558 NCR3O14931 201 aa9.28□□□□□ -0.92
VPS54-203ENST00000409558 LECT2O14960 151 aa9.28□□□□□ -0.92
VPS54-203ENST00000409558 C9orf66Q5T8R8 295 aa9.28□□□□□ -0.92
VPS54-203ENST00000409558 SMIM11BQ8TCY0 68 aa9.28□□□□□ -0.92
VPS54-203ENST00000409558 CSDC2Q9Y534 153 aaKnown RBP9.28□□□□□ -0.92
VPS54-203ENST00000409558 A0A087WYN8 130 aa9.28□□□□□ -0.92
VPS54-203ENST00000409558 CHCHD10Q8WYQ3 142 aaPredicted RBP9.28□□□□□ -0.92
VPS54-203ENST00000409558 COX7A2LO14548 114 aa9.27□□□□□ -0.92
VPS54-203ENST00000409558 RNF183Q96D59 192 aa9.27□□□□□ -0.92
VPS54-203ENST00000409558 IGHV4-30-4P0DP06 118 aa9.27□□□□□ -0.93
VPS54-203ENST00000409558 IGKV2-28A0A075B6P5 120 aa9.27□□□□□ -0.93
VPS54-203ENST00000409558 IGKV2D-28P01615 120 aa9.27□□□□□ -0.93
VPS54-203ENST00000409558 HERV-K104P63124 156 aa9.27□□□□□ -0.93
VPS54-203ENST00000409558 REG3AQ06141 175 aa9.27□□□□□ -0.93
VPS54-203ENST00000409558 TIMM17BO60830 172 aa9.25□□□□□ -0.93
VPS54-203ENST00000409558 XAGE1AQ9HD64 81 aa9.25□□□□□ -0.93
VPS54-203ENST00000409558 C14orf132Q9NPU4 83 aa9.25□□□□□ -0.93
VPS54-203ENST00000409558 HIGD2BQ4VC39 106 aa9.24□□□□□ -0.93
VPS54-203ENST00000409558 A0A087WZ39 114 aa9.24□□□□□ -0.93
VPS54-203ENST00000409558 C9orf129Q5T035 196 aaKnown RBP9.24□□□□□ -0.93
VPS54-203ENST00000409558 MRAPQ8TCY5 172 aa9.24□□□□□ -0.93
VPS54-203ENST00000409558 APOC4P55056 127 aa9.23□□□□□ -0.93
VPS54-203ENST00000409558 UNQ6190/PRO20217Q6UXQ8 127 aa9.23□□□□□ -0.93
VPS54-203ENST00000409558 TRAV13-2A0A0B4J235 113 aa9.22□□□□□ -0.93
VPS54-203ENST00000409558 C10orf25Q5T742 122 aa9.22□□□□□ -0.93
VPS54-203ENST00000409558 COPS9Q8WXC6 57 aa9.22□□□□□ -0.93
VPS54-203ENST00000409558 H3BT86 120 aa9.22□□□□□ -0.93
VPS54-203ENST00000409558 KIR2DL5BQ8NHK3 375 aa9.22□□□□□ -0.93
VPS54-203ENST00000409558 SPART-AS1P0CW21 52 aa9.21□□□□□ -0.94
VPS54-203ENST00000409558 S100A7L2Q5SY68 101 aa9.2□□□□□ -0.94
VPS54-203ENST00000409558 B5MCH6 92 aa9.19□□□□□ -0.94
VPS54-203ENST00000409558 SHISA2Q6UWI4 295 aa9.19□□□□□ -0.94
VPS54-203ENST00000409558 SPAG11BQ08648 103 aa9.19□□□□□ -0.94
VPS54-203ENST00000409558 RPL18AQ02543 176 aaKnown RBP9.18□□□□□ -0.94
VPS54-203ENST00000409558 IGKV3D-7A0A0C4DH55 119 aa9.18□□□□□ -0.94
VPS54-203ENST00000409558 IBA57-AS1B1ANH7 110 aa9.18□□□□□ -0.94
VPS54-203ENST00000409558 Q6ZTC4 211 aa9.17□□□□□ -0.94
VPS54-203ENST00000409558 WFDC10BQ8IUB3 73 aa9.17□□□□□ -0.94
VPS54-203ENST00000409558 MRPL23Q16540 153 aaKnown RBP9.17□□□□□ -0.94
VPS54-203ENST00000409558 Q8NAQ8 132 aa9.16□□□□□ -0.94
VPS54-203ENST00000409558 SS18L2Q9UHA2 77 aa9.16□□□□□ -0.94
VPS54-203ENST00000409558 LYRM9A8MSI8 78 aa9.16□□□□□ -0.94
VPS54-203ENST00000409558 C6orf99Q4VX62 202 aa9.15□□□□□ -0.94
VPS54-203ENST00000409558 CYSRT1A8MQ03 144 aa9.15□□□□□ -0.94
VPS54-203ENST00000409558 NANOS2P60321 138 aaKnown RBP9.15□□□□□ -0.95
VPS54-203ENST00000409558 CD164L2Q6UWJ8 174 aa9.15□□□□□ -0.95
VPS54-203ENST00000409558 DEFB121Q5J5C9 76 aa9.14□□□□□ -0.95
VPS54-203ENST00000409558 CCDC179H3BU77 68 aa9.14□□□□□ -0.95
VPS54-203ENST00000409558 Q8NDZ9 215 aa9.14□□□□□ -0.95
VPS54-203ENST00000409558 SCGB1A1P11684 91 aa9.14□□□□□ -0.95
VPS54-203ENST00000409558 SMIM9A6NGZ8 99 aa9.14□□□□□ -0.95
VPS54-203ENST00000409558 SMCR5Q8TEV8 140 aa9.14□□□□□ -0.95
VPS54-203ENST00000409558 FAM236AA0A1B0GUQ0 79 aa9.13□□□□□ -0.95
VPS54-203ENST00000409558 FAM236BA0A1B0GV22 79 aa9.13□□□□□ -0.95
VPS54-203ENST00000409558 NDUFV3P56181 108 aaKnown RBP9.13□□□□□ -0.95
VPS54-203ENST00000409558 SDIM1Q6ZPB5 146 aa9.13□□□□□ -0.95
VPS54-203ENST00000409558 RPL28P46779 137 aaKnown RBP9.12□□□□□ -0.95
VPS54-203ENST00000409558 KPRPQ5T749 579 aaPredicted RBP9.12□□□□□ -0.95
VPS54-203ENST00000409558 FAM19A3Q7Z5A8 133 aa9.12□□□□□ -0.95
VPS54-203ENST00000409558 IGKV2D-24A0A075B6R9 120 aa9.12□□□□□ -0.95
VPS54-203ENST00000409558 Q8IZM0 81 aa9.12□□□□□ -0.95
VPS54-203ENST00000409558 A0A1B0GUV1 79 aa9.11□□□□□ -0.95
VPS54-203ENST00000409558 KRTAP10-11P60412 298 aa9.11□□□□□ -0.95
VPS54-203ENST00000409558 WFDC9Q8NEX5 89 aa9.11□□□□□ -0.95
VPS54-203ENST00000409558 CITED1Q99966 193 aa9.11□□□□□ -0.95
VPS54-203ENST00000409558 A0A0J9YWU9 116 aa9.11□□□□□ -0.95
VPS54-203ENST00000409558 TRACP01848 142 aa9.11□□□□□ -0.95
VPS54-203ENST00000409558 MIFP14174 115 aa9.1□□□□□ -0.95
VPS54-203ENST00000409558 ZNF561-AS1K7EIQ3 104 aa9.1□□□□□ -0.95
VPS54-203ENST00000409558 CSMD3Q7Z407 3707 aa9.1□□□□□ -0.95
VPS54-203ENST00000409558 STAB2Q8WWQ8 2551 aa9.1□□□□□ -0.95
VPS54-203ENST00000409558 KIAA0087Q14695 138 aa9.09□□□□□ -0.95
VPS54-203ENST00000409558 HIST1H4AP62805 103 aaKnown RBP9.09□□□□□ -0.95
VPS54-203ENST00000409558 LINC00612Q8N6U2 182 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms