RNA–Protein interactions for RNA: ENST00000409470.5

USP39-203, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,034 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-203ENST00000409470 Q8IZM0 81 aa14.13□□□□□ -0.15
USP39-203ENST00000409470 KLK12Q9UKR0 248 aa14.13□□□□□ -0.15
USP39-203ENST00000409470 DEFB131BA0A096LNP1 70 aa14.12□□□□□ -0.15
USP39-203ENST00000409470 DEFB121Q5J5C9 76 aa14.12□□□□□ -0.15
USP39-203ENST00000409470 MIR7-3HGQ8N6C7 128 aa14.12□□□□□ -0.15
USP39-203ENST00000409470 SPATA25Q9BR10 227 aa14.12□□□□□ -0.15
USP39-203ENST00000409470 MALP21145 153 aa14.12□□□□□ -0.15
USP39-203ENST00000409470 RPL13AP40429 203 aaKnown RBP14.12□□□□□ -0.15
USP39-203ENST00000409470 IBA57-AS1B1ANH7 110 aa14.11□□□□□ -0.15
USP39-203ENST00000409470 TENM3Q9P273 2699 aa14.1□□□□□ -0.15
USP39-203ENST00000409470 TRBV30A0A0K0K1B3 111 aa14.1□□□□□ -0.15
USP39-203ENST00000409470 K7EIL1 84 aa14.1□□□□□ -0.15
USP39-203ENST00000409470 PRO0461Q9UI25 63 aa14.1□□□□□ -0.15
USP39-203ENST00000409470 PFN2P35080 140 aa14.1□□□□□ -0.15
USP39-203ENST00000409470 MRAPQ8TCY5 172 aa14.1□□□□□ -0.15
USP39-203ENST00000409470 K7ERU9 68 aa14.09□□□□□ -0.15
USP39-203ENST00000409470 TRIAP1O43715 76 aa14.09□□□□□ -0.15
USP39-203ENST00000409470 CKS1BP61024 79 aa14.08□□□□□ -0.15
USP39-203ENST00000409470 FOXI1Q12951 378 aa14.08□□□□□ -0.15
USP39-203ENST00000409470 PPDPFQ9H3Y8 114 aa14.08□□□□□ -0.15
USP39-203ENST00000409470 PRR34Q9NV39 138 aa14.08□□□□□ -0.15
USP39-203ENST00000409470 GAGE12HA6NDE8 117 aa14.08□□□□□ -0.16
USP39-203ENST00000409470 CFAP161Q6P656 301 aa14.08□□□□□ -0.16
USP39-203ENST00000409470 C2orf82Q6UX34 121 aa14.07□□□□□ -0.16
USP39-203ENST00000409470 WFDC10BQ8IUB3 73 aa14.07□□□□□ -0.16
USP39-203ENST00000409470 CRPP02741 224 aa14.07□□□□□ -0.16
USP39-203ENST00000409470 TM2D3Q9BRN9 247 aa14.07□□□□□ -0.16
USP39-203ENST00000409470 COX6CP09669 75 aa14.06□□□□□ -0.16
USP39-203ENST00000409470 ENHOQ6UWT2 76 aa14.06□□□□□ -0.16
USP39-203ENST00000409470 KIAA0087Q14695 138 aa14.05□□□□□ -0.16
USP39-203ENST00000409470 ESRGQ1W209 222 aa14.05□□□□□ -0.16
USP39-203ENST00000409470 RNF151Q2KHN1 245 aa14.05□□□□□ -0.16
USP39-203ENST00000409470 UBE2WQ96B02 151 aa14.05□□□□□ -0.16
USP39-203ENST00000409470 SND1-IT1Q9HBX3 110 aa14.04□□□□□ -0.16
USP39-203ENST00000409470 CXCL5P42830 114 aa14.03□□□□□ -0.16
USP39-203ENST00000409470 ATXN8Q156A1 80 aa14.03□□□□□ -0.16
USP39-203ENST00000409470 ETDBQ3ZM63 59 aa14.03□□□□□ -0.16
USP39-203ENST00000409470 NBEAL1Q6ZS30 2694 aa14.03□□□□□ -0.16
USP39-203ENST00000409470 SMCPP49901 116 aaPredicted RBP14.02□□□□□ -0.17
USP39-203ENST00000409470 CCL18P55774 89 aa14.02□□□□□ -0.17
USP39-203ENST00000409470 MDFIQ99750 246 aa14.02□□□□□ -0.17
USP39-203ENST00000409470 TRAV10A0A0B4J240 114 aa14□□□□□ -0.17
USP39-203ENST00000409470 TRAV8-4A0A0B4J246 113 aa14□□□□□ -0.17
USP39-203ENST00000409470 KLK5Q9Y337 293 aaPredicted RBP14□□□□□ -0.17
USP39-203ENST00000409470 SPAG11BQ08648 103 aa13.99□□□□□ -0.17
USP39-203ENST00000409470 TRAV13-2A0A0B4J235 113 aa13.98□□□□□ -0.17
USP39-203ENST00000409470 C9JAW5 83 aa13.98□□□□□ -0.17
USP39-203ENST00000409470 MGAM2Q2M2H8 2515 aa13.97□□□□□ -0.17
USP39-203ENST00000409470 LINC01620Q4KN68 170 aa13.97□□□□□ -0.17
USP39-203ENST00000409470 CLEC2BQ92478 149 aa13.97□□□□□ -0.17
USP39-203ENST00000409470 IGKV2-28A0A075B6P5 120 aa13.96□□□□□ -0.17
USP39-203ENST00000409470 IGKV2D-28P01615 120 aa13.96□□□□□ -0.17
USP39-203ENST00000409470 COX17Q14061 63 aa13.96□□□□□ -0.17
USP39-203ENST00000409470 SLC25A20O43772 301 aa13.95□□□□□ -0.18
USP39-203ENST00000409470 VPS25Q9BRG1 176 aa13.95□□□□□ -0.18
USP39-203ENST00000409470 C6orf223Q8N319 242 aa13.95□□□□□ -0.18
USP39-203ENST00000409470 LINC00337Q8N6G1 96 aa13.95□□□□□ -0.18
USP39-203ENST00000409470 C15orf53Q8NAA6 179 aa13.94□□□□□ -0.18
USP39-203ENST00000409470 C9orf116Q5BN46 136 aaPredicted RBP13.93□□□□□ -0.18
USP39-203ENST00000409470 LINC01556Q5JQF7 62 aa13.93□□□□□ -0.18
USP39-203ENST00000409470 LINC00526Q96FQ7 95 aa13.93□□□□□ -0.18
USP39-203ENST00000409470 J3QR89 54 aa13.92□□□□□ -0.18
USP39-203ENST00000409470 UNQ6190/PRO20217Q6UXQ8 127 aa13.92□□□□□ -0.18
USP39-203ENST00000409470 LST1O00453 97 aa13.91□□□□□ -0.18
USP39-203ENST00000409470 HUWE1Q7Z6Z7 4374 aaKnown RBP13.91□□□□□ -0.18
USP39-203ENST00000409470 C10orf25Q5T742 122 aa13.91□□□□□ -0.18
USP39-203ENST00000409470 TEN1Q86WV5 123 aa13.9□□□□□ -0.18
USP39-203ENST00000409470 TRBV10-2A0A0K0K1G8 114 aa13.89□□□□□ -0.19
USP39-203ENST00000409470 ANKRD29Q8N6D5 301 aa13.89□□□□□ -0.19
USP39-203ENST00000409470 OR13C6PQ8NH95 151 aa13.88□□□□□ -0.19
USP39-203ENST00000409470 M0QXV9 152 aa13.88□□□□□ -0.19
USP39-203ENST00000409470 RPL28P46779 137 aaKnown RBP13.88□□□□□ -0.19
USP39-203ENST00000409470 KRTAP26-1Q6PEX3 210 aa13.88□□□□□ -0.19
USP39-203ENST00000409470 C1orf43Q9BWL3 253 aa13.88□□□□□ -0.19
USP39-203ENST00000409470 CBY1Q9Y3M2 126 aa13.88□□□□□ -0.19
USP39-203ENST00000409470 DNAH10OSP0CZ25 163 aa13.86□□□□□ -0.19
USP39-203ENST00000409470 NTN5Q8WTR8 489 aaPredicted RBP13.86□□□□□ -0.19
USP39-203ENST00000409470 ZNF561-AS1K7EIQ3 104 aa13.85□□□□□ -0.19
USP39-203ENST00000409470 SMIM11BQ8TCY0 68 aa13.85□□□□□ -0.19
USP39-203ENST00000409470 PPDPFLQ8WWR9 84 aa13.85□□□□□ -0.19
USP39-203ENST00000409470 LINC00588Q9Y4M8 146 aa13.85□□□□□ -0.19
USP39-203ENST00000409470 IGKV2D-24A0A075B6R9 120 aa13.85□□□□□ -0.19
USP39-203ENST00000409470 HIGD2BQ4VC39 106 aa13.85□□□□□ -0.19
USP39-203ENST00000409470 NDUFC2O95298 119 aa13.83□□□□□ -0.2
USP39-203ENST00000409470 MUC7Q8TAX7 377 aa13.83□□□□□ -0.2
USP39-203ENST00000409470 GVQW2A0A096LPI5 108 aaPredicted RBP13.82□□□□□ -0.2
USP39-203ENST00000409470 CARD19Q96LW7 228 aa13.82□□□□□ -0.2
USP39-203ENST00000409470 Q9HAA7 133 aa13.82□□□□□ -0.2
USP39-203ENST00000409470 H3BT86 120 aa13.81□□□□□ -0.2
USP39-203ENST00000409470 PRR3P79522 188 aaKnown RBP13.81□□□□□ -0.2
USP39-203ENST00000409470 C6orf48Q9UBA6 75 aa13.81□□□□□ -0.2
USP39-203ENST00000409470 LINC01600Q96MT4 127 aa13.81□□□□□ -0.2
USP39-203ENST00000409470 CAMK2N2Q96S95 79 aa13.81□□□□□ -0.2
USP39-203ENST00000409470 C15orf56Q8N910 161 aa13.8□□□□□ -0.2
USP39-203ENST00000409470 FAM218AQ96MZ4 157 aa13.79□□□□□ -0.2
USP39-203ENST00000409470 TRACP01848 142 aa13.78□□□□□ -0.2
USP39-203ENST00000409470 B9D2Q9BPU9 175 aa13.76□□□□□ -0.21
USP39-203ENST00000409470 H0YGX0 51 aa13.76□□□□□ -0.21
USP39-203ENST00000409470 NCR3O14931 201 aa13.76□□□□□ -0.21
USP39-203ENST00000409470 C2orf48Q96LS8 159 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms