RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 SPRY4Q9C004 299 aa3.4□□□□□ -1.86
SCN1A-202ENST00000375405 MGAMO43451 1857 aa3.4□□□□□ -1.86
SCN1A-202ENST00000375405 E9PLD3 99 aa3.4□□□□□ -1.86
SCN1A-202ENST00000375405 NDUFA7O95182 113 aa3.4□□□□□ -1.86
SCN1A-202ENST00000375405 RPL37AP61513 92 aaKnown RBP3.4□□□□□ -1.86
SCN1A-202ENST00000375405 Q6JHZ5 121 aa3.4□□□□□ -1.86
SCN1A-202ENST00000375405 KTN1-AS1Q86SY8 53 aa3.4□□□□□ -1.86
SCN1A-202ENST00000375405 ODF3Q96PU9 254 aa3.4□□□□□ -1.86
SCN1A-202ENST00000375405 ZNF503-AS2A6NEH8 195 aa3.4□□□□□ -1.87
SCN1A-202ENST00000375405 CDKN2A-AS1Q9UH64 79 aa3.4□□□□□ -1.87
SCN1A-202ENST00000375405 SMIM11BQ8TCY0 68 aa3.4□□□□□ -1.87
SCN1A-202ENST00000375405 SMR3AQ99954 134 aa3.4□□□□□ -1.87
SCN1A-202ENST00000375405 IGLV5-48A0A075B6I7 105 aa3.4□□□□□ -1.87
SCN1A-202ENST00000375405 SPRNQ5BIV9 151 aa3.4□□□□□ -1.87
SCN1A-202ENST00000375405 C9orf116Q5BN46 136 aaPredicted RBP3.4□□□□□ -1.87
SCN1A-202ENST00000375405 IGLV3-12A0A075B6K2 115 aa3.39□□□□□ -1.87
SCN1A-202ENST00000375405 ZNF747Q9BV97 191 aa3.39□□□□□ -1.87
SCN1A-202ENST00000375405 BRWD3Q6RI45 1802 aa3.39□□□□□ -1.87
SCN1A-202ENST00000375405 LINC00694P0DN24 101 aa3.39□□□□□ -1.87
SCN1A-202ENST00000375405 UNQ9165/PRO28630Q6UXU0 137 aa3.39□□□□□ -1.87
SCN1A-202ENST00000375405 WDR90Q96KV7 1748 aa3.39□□□□□ -1.87
SCN1A-202ENST00000375405 TRBV10-3A0A0K0K1G6 114 aa3.39□□□□□ -1.87
SCN1A-202ENST00000375405 PROK2Q9HC23 129 aa3.39□□□□□ -1.87
SCN1A-202ENST00000375405 MAPKAPK5-AS1Q8N8E1 139 aa3.38□□□□□ -1.87
SCN1A-202ENST00000375405 USP9XQ93008 2570 aaPredicted RBP3.38□□□□□ -1.87
SCN1A-202ENST00000375405 LINC00242Q5T6M2 205 aa3.38□□□□□ -1.87
SCN1A-202ENST00000375405 A0A0J9YX75 114 aa3.38□□□□□ -1.87
SCN1A-202ENST00000375405 IGLV3-32A0A0A0MS00 114 aa3.38□□□□□ -1.87
SCN1A-202ENST00000375405 NEXN-AS1Q8NBZ9 246 aa3.38□□□□□ -1.87
SCN1A-202ENST00000375405 DEFB114Q30KQ6 69 aa3.38□□□□□ -1.87
SCN1A-202ENST00000375405 PRR3P79522 188 aaKnown RBP3.37□□□□□ -1.87
SCN1A-202ENST00000375405 IGLV5-45A0A087WSX0 123 aa3.37□□□□□ -1.87
SCN1A-202ENST00000375405 P0C879 139 aa3.37□□□□□ -1.87
SCN1A-202ENST00000375405 TM2D3Q9BRN9 247 aa3.37□□□□□ -1.87
SCN1A-202ENST00000375405 SIP14410 1827 aa3.37□□□□□ -1.87
SCN1A-202ENST00000375405 COX17Q14061 63 aa3.37□□□□□ -1.87
SCN1A-202ENST00000375405 Q8TCH9 128 aa3.37□□□□□ -1.87
SCN1A-202ENST00000375405 A0A087WYN8 130 aa3.37□□□□□ -1.87
SCN1A-202ENST00000375405 TRIAP1O43715 76 aa3.37□□□□□ -1.87
SCN1A-202ENST00000375405 NHLRC4P0CG21 123 aaPredicted RBP3.37□□□□□ -1.87
SCN1A-202ENST00000375405 COL5A1P20908 1838 aaPredicted RBP3.37□□□□□ -1.87
SCN1A-202ENST00000375405 ERC2-IT1O76042 136 aa3.37□□□□□ -1.87
SCN1A-202ENST00000375405 C20orf203Q8NBC4 194 aa3.37□□□□□ -1.87
SCN1A-202ENST00000375405 C11orf1Q9H5F2 150 aa3.36□□□□□ -1.87
SCN1A-202ENST00000375405 RPS28P62857 69 aaKnown RBP3.36□□□□□ -1.87
SCN1A-202ENST00000375405 UNQ6190/PRO20217Q6UXQ8 127 aa3.36□□□□□ -1.87
SCN1A-202ENST00000375405 CDC42SE1Q9NRR8 79 aa3.36□□□□□ -1.87
SCN1A-202ENST00000375405 Q5VSD8 79 aa3.36□□□□□ -1.87
SCN1A-202ENST00000375405 LINC00959A0A1B0GUT2 108 aa3.36□□□□□ -1.87
SCN1A-202ENST00000375405 PRM2P04554 102 aa3.36□□□□□ -1.87
SCN1A-202ENST00000375405 ADAMTS20P59510 1910 aa3.35□□□□□ -1.87
SCN1A-202ENST00000375405 CCDC179H3BU77 68 aa3.35□□□□□ -1.87
SCN1A-202ENST00000375405 SMR3BP02814 79 aaPredicted RBP3.35□□□□□ -1.87
SCN1A-202ENST00000375405 ZNF22P17026 224 aaPredicted RBP3.35□□□□□ -1.87
SCN1A-202ENST00000375405 NTM-AS1Q6ZSK4 140 aa3.35□□□□□ -1.87
SCN1A-202ENST00000375405 E7EUB6 86 aa3.35□□□□□ -1.87
SCN1A-202ENST00000375405 SMCR5Q8TEV8 140 aa3.35□□□□□ -1.87
SCN1A-202ENST00000375405 MBD6Q96DN6 1003 aa3.35□□□□□ -1.87
SCN1A-202ENST00000375405 COX7CP15954 63 aa3.35□□□□□ -1.87
SCN1A-202ENST00000375405 Q8N3U1 123 aa3.35□□□□□ -1.87
SCN1A-202ENST00000375405 LINC00588Q9Y4M8 146 aa3.35□□□□□ -1.87
SCN1A-202ENST00000375405 Q6ZQT0 140 aa3.35□□□□□ -1.87
SCN1A-202ENST00000375405 IGFL3Q6UXB1 125 aa3.34□□□□□ -1.87
SCN1A-202ENST00000375405 LINC00167Q96N53 147 aa3.34□□□□□ -1.87
SCN1A-202ENST00000375405 MTORP42345 2549 aa3.34□□□□□ -1.87
SCN1A-202ENST00000375405 TRBV6-4A0A1B0GX49 114 aa3.34□□□□□ -1.87
SCN1A-202ENST00000375405 Q6YL49 198 aa3.34□□□□□ -1.87
SCN1A-202ENST00000375405 LRRC75A-AS1Q8N1F1 130 aa3.34□□□□□ -1.87
SCN1A-202ENST00000375405 Q6ZS49 121 aa3.34□□□□□ -1.88
SCN1A-202ENST00000375405 PIP4P1Q86T03 277 aa3.34□□□□□ -1.88
SCN1A-202ENST00000375405 MRPS12O15235 138 aaKnown RBP3.34□□□□□ -1.88
SCN1A-202ENST00000375405 A8MTW9 85 aa3.33□□□□□ -1.88
SCN1A-202ENST00000375405 K7EIM0 57 aa3.33□□□□□ -1.88
SCN1A-202ENST00000375405 ODF3BA8MYP8 253 aa3.33□□□□□ -1.88
SCN1A-202ENST00000375405 H1FX-AS1Q4G0G2 97 aa3.33□□□□□ -1.88
SCN1A-202ENST00000375405 GDF5OSQ5U4N7 250 aa3.33□□□□□ -1.88
SCN1A-202ENST00000375405 LINC00336Q6ZUF6 198 aa3.33□□□□□ -1.88
SCN1A-202ENST00000375405 C18orf65Q6ZTR6 163 aa3.33□□□□□ -1.88
SCN1A-202ENST00000375405 AMELXQ99217 191 aa3.33□□□□□ -1.88
SCN1A-202ENST00000375405 FSTL3O95633 263 aa3.33□□□□□ -1.88
SCN1A-202ENST00000375405 Q6ZRP5 223 aa3.33□□□□□ -1.88
SCN1A-202ENST00000375405 ZNF295-AS1Q8N0V1 137 aa3.33□□□□□ -1.88
SCN1A-202ENST00000375405 TP53AIP1Q9HCN2 124 aa3.33□□□□□ -1.88
SCN1A-202ENST00000375405 A0A0A0MQY5 61 aa3.33□□□□□ -1.88
SCN1A-202ENST00000375405 IGLV1-44P01699 117 aa3.33□□□□□ -1.88
SCN1A-202ENST00000375405 BRWD1-AS2P59051 145 aa3.33□□□□□ -1.88
SCN1A-202ENST00000375405 RTL8CO15255 209 aa3.33□□□□□ -1.88
SCN1A-202ENST00000375405 C11orf71Q6IPW1 123 aa3.33□□□□□ -1.88
SCN1A-202ENST00000375405 OBSCN-AS1Q96MR7 158 aa3.33□□□□□ -1.88
SCN1A-202ENST00000375405 SMIM29Q86T20 159 aa3.32□□□□□ -1.88
SCN1A-202ENST00000375405 CRIPAKQ8N1N5 446 aa3.32□□□□□ -1.88
SCN1A-202ENST00000375405 THSD7AQ9UPZ6 1657 aa3.32□□□□□ -1.88
SCN1A-202ENST00000375405 I3L2K1 104 aa3.32□□□□□ -1.88
SCN1A-202ENST00000375405 POLR2KP53803 58 aaKnown RBP3.32□□□□□ -1.88
SCN1A-202ENST00000375405 C1orf147Q96MC9 270 aaPredicted RBP3.32□□□□□ -1.88
SCN1A-202ENST00000375405 LITAFQ99732 161 aa3.32□□□□□ -1.88
SCN1A-202ENST00000375405 JMJD1CQ15652 2540 aa3.32□□□□□ -1.88
SCN1A-202ENST00000375405 IGHV3OR16-9A0A0B4J2B5 98 aa3.31□□□□□ -1.88
SCN1A-202ENST00000375405 K7EQZ3 153 aa3.31□□□□□ -1.88
SCN1A-202ENST00000375405 FAM215AQ9Y5M1 114 aa3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms