RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 M0QXV9 152 aa10.77□□□□□ -0.68
CCDC40-202ENST00000374876 FAM222AQ5U5X8 452 aa10.77□□□□□ -0.68
CCDC40-202ENST00000374876 COX7B2Q8TF08 81 aa10.77□□□□□ -0.68
CCDC40-202ENST00000374876 WWC2-AS2Q96NR7 200 aa10.77□□□□□ -0.68
CCDC40-202ENST00000374876 PRO0255Q9UI72 69 aa10.77□□□□□ -0.68
CCDC40-202ENST00000374876 CARD19Q96LW7 228 aa10.77□□□□□ -0.69
CCDC40-202ENST00000374876 IGHV4-28A0A0C4DH34 117 aa10.76□□□□□ -0.69
CCDC40-202ENST00000374876 LYRM9A8MSI8 78 aa10.76□□□□□ -0.69
CCDC40-202ENST00000374876 TOMM7Q9P0U1 55 aa10.76□□□□□ -0.69
CCDC40-202ENST00000374876 Q8NAQ8 132 aa10.75□□□□□ -0.69
CCDC40-202ENST00000374876 TMEM262E9PQX1 116 aa10.75□□□□□ -0.69
CCDC40-202ENST00000374876 SOSTDC1Q6X4U4 206 aa10.75□□□□□ -0.69
CCDC40-202ENST00000374876 IGHV3OR16-9A0A0B4J2B5 98 aa10.74□□□□□ -0.69
CCDC40-202ENST00000374876 MIFP14174 115 aa10.74□□□□□ -0.69
CCDC40-202ENST00000374876 TRBV10-2A0A0K0K1G8 114 aa10.74□□□□□ -0.69
CCDC40-202ENST00000374876 PAX4O43316 350 aa10.73□□□□□ -0.69
CCDC40-202ENST00000374876 A0A087WZ39 114 aa10.72□□□□□ -0.69
CCDC40-202ENST00000374876 A0A096LPF7 62 aa10.72□□□□□ -0.69
CCDC40-202ENST00000374876 LINC00959A0A1B0GUT2 108 aa10.72□□□□□ -0.69
CCDC40-202ENST00000374876 CLEC2BQ92478 149 aa10.72□□□□□ -0.69
CCDC40-202ENST00000374876 C5orf38Q86SI9 138 aa10.72□□□□□ -0.69
CCDC40-202ENST00000374876 A0A1B0GUV1 79 aa10.71□□□□□ -0.69
CCDC40-202ENST00000374876 C11orf68Q9H3H3 251 aaKnown RBP10.71□□□□□ -0.69
CCDC40-202ENST00000374876 PPDPFQ9H3Y8 114 aa10.71□□□□□ -0.69
CCDC40-202ENST00000374876 LST1O00453 97 aa10.7□□□□□ -0.7
CCDC40-202ENST00000374876 DAD1P61803 113 aa10.7□□□□□ -0.7
CCDC40-202ENST00000374876 SS18Q15532 418 aa10.7□□□□□ -0.7
CCDC40-202ENST00000374876 C2orf82Q6UX34 121 aa10.7□□□□□ -0.7
CCDC40-202ENST00000374876 MUC7Q8TAX7 377 aa10.7□□□□□ -0.7
CCDC40-202ENST00000374876 NTN5Q8WTR8 489 aaPredicted RBP10.7□□□□□ -0.7
CCDC40-202ENST00000374876 LINC01600Q96MT4 127 aa10.7□□□□□ -0.7
CCDC40-202ENST00000374876 NANOS2P60321 138 aaKnown RBP10.69□□□□□ -0.7
CCDC40-202ENST00000374876 MIR7-3HGQ8N6C7 128 aa10.69□□□□□ -0.7
CCDC40-202ENST00000374876 XCL1P47992 114 aa10.68□□□□□ -0.7
CCDC40-202ENST00000374876 C11orf45Q8TAV5 145 aa10.68□□□□□ -0.7
CCDC40-202ENST00000374876 CDIP1Q9H305 208 aa10.68□□□□□ -0.7
CCDC40-202ENST00000374876 CELA1Q9UNI1 258 aa10.68□□□□□ -0.7
CCDC40-202ENST00000374876 DNAH7Q8WXX0 4024 aa10.68□□□□□ -0.7
CCDC40-202ENST00000374876 LINC00158P58513 81 aa10.68□□□□□ -0.7
CCDC40-202ENST00000374876 H3BT86 120 aa10.67□□□□□ -0.7
CCDC40-202ENST00000374876 SCGB1A1P11684 91 aa10.67□□□□□ -0.7
CCDC40-202ENST00000374876 CLPSL2Q6UWE3 100 aa10.67□□□□□ -0.7
CCDC40-202ENST00000374876 CSMD3Q7Z407 3707 aa10.67□□□□□ -0.7
CCDC40-202ENST00000374876 IBA57-AS1B1ANH7 110 aa10.66□□□□□ -0.7
CCDC40-202ENST00000374876 COX7A2LO14548 114 aa10.66□□□□□ -0.7
CCDC40-202ENST00000374876 C6orf226Q5I0X4 101 aa10.66□□□□□ -0.7
CCDC40-202ENST00000374876 TRAV13-2A0A0B4J235 113 aa10.65□□□□□ -0.7
CCDC40-202ENST00000374876 TEX49A0A1B0GTD5 131 aa10.65□□□□□ -0.7
CCDC40-202ENST00000374876 ATP5G1P05496 136 aa10.65□□□□□ -0.7
CCDC40-202ENST00000374876 UBE2WQ96B02 151 aa10.65□□□□□ -0.7
CCDC40-202ENST00000374876 SND1-IT1Q9HBX3 110 aa10.65□□□□□ -0.7
CCDC40-202ENST00000374876 TRAV26-1A0A087WT03 109 aa10.64□□□□□ -0.71
CCDC40-202ENST00000374876 CRPP02741 224 aa10.64□□□□□ -0.71
CCDC40-202ENST00000374876 SPART-AS1P0CW21 52 aa10.63□□□□□ -0.71
CCDC40-202ENST00000374876 PFN2P35080 140 aa10.63□□□□□ -0.71
CCDC40-202ENST00000374876 C3orf84H3BNL1 204 aa10.63□□□□□ -0.71
CCDC40-202ENST00000374876 CASC10Q5T4H9 136 aa10.63□□□□□ -0.71
CCDC40-202ENST00000374876 LINC00269Q8N2A0 174 aa10.63□□□□□ -0.71
CCDC40-202ENST00000374876 Q6ZTC4 211 aa10.62□□□□□ -0.71
CCDC40-202ENST00000374876 Q8IZM0 81 aa10.62□□□□□ -0.71
CCDC40-202ENST00000374876 ANGP03950 147 aaKnown RBP10.61□□□□□ -0.71
CCDC40-202ENST00000374876 HTN3P15516 51 aa10.61□□□□□ -0.71
CCDC40-202ENST00000374876 CCL18P55774 89 aa10.61□□□□□ -0.71
CCDC40-202ENST00000374876 LINC01561Q8N1V8 128 aa10.61□□□□□ -0.71
CCDC40-202ENST00000374876 IGKV2-28A0A075B6P5 120 aa10.6□□□□□ -0.71
CCDC40-202ENST00000374876 IGKV2D-28P01615 120 aa10.6□□□□□ -0.71
CCDC40-202ENST00000374876 XGP55808 180 aa10.6□□□□□ -0.71
CCDC40-202ENST00000374876 LINC00337Q8N6G1 96 aa10.6□□□□□ -0.71
CCDC40-202ENST00000374876 MT-ATP8P03928 68 aa10.6□□□□□ -0.71
CCDC40-202ENST00000374876 MRPL23Q16540 153 aaKnown RBP10.6□□□□□ -0.71
CCDC40-202ENST00000374876 CD164L2Q6UWJ8 174 aa10.6□□□□□ -0.71
CCDC40-202ENST00000374876 STARD9Q9P2P6 4700 aa10.59□□□□□ -0.71
CCDC40-202ENST00000374876 RPL28P46779 137 aaKnown RBP10.59□□□□□ -0.71
CCDC40-202ENST00000374876 REG3AQ06141 175 aa10.59□□□□□ -0.71
CCDC40-202ENST00000374876 TRAV8-4A0A0B4J246 113 aa10.58□□□□□ -0.72
CCDC40-202ENST00000374876 CKS1BP61024 79 aa10.58□□□□□ -0.72
CCDC40-202ENST00000374876 CHCHD10Q8WYQ3 142 aaPredicted RBP10.58□□□□□ -0.72
CCDC40-202ENST00000374876 TRACP01848 142 aa10.58□□□□□ -0.72
CCDC40-202ENST00000374876 Q8N3U1 123 aa10.58□□□□□ -0.72
CCDC40-202ENST00000374876 IGLV10-54A0A075B6I4 117 aa10.57□□□□□ -0.72
CCDC40-202ENST00000374876 MALP21145 153 aa10.57□□□□□ -0.72
CCDC40-202ENST00000374876 CFAP161Q6P656 301 aa10.57□□□□□ -0.72
CCDC40-202ENST00000374876 DEFB131BA0A096LNP1 70 aa10.56□□□□□ -0.72
CCDC40-202ENST00000374876 TENM2Q9NT68 2774 aa10.56□□□□□ -0.72
CCDC40-202ENST00000374876 LELP1Q5T871 98 aa10.55□□□□□ -0.72
CCDC40-202ENST00000374876 TRAV10A0A0B4J240 114 aa10.55□□□□□ -0.72
CCDC40-202ENST00000374876 NUPR2A6NF83 97 aa10.55□□□□□ -0.72
CCDC40-202ENST00000374876 SMIM11BQ8TCY0 68 aa10.55□□□□□ -0.72
CCDC40-202ENST00000374876 FAM218AQ96MZ4 157 aa10.55□□□□□ -0.72
CCDC40-202ENST00000374876 CXCL5P42830 114 aa10.54□□□□□ -0.72
CCDC40-202ENST00000374876 OR13C6PQ8NH95 151 aa10.53□□□□□ -0.72
CCDC40-202ENST00000374876 KIAA0087Q14695 138 aa10.53□□□□□ -0.72
CCDC40-202ENST00000374876 BAALC-AS2P0C853 105 aa10.52□□□□□ -0.73
CCDC40-202ENST00000374876 KLK5Q9Y337 293 aaPredicted RBP10.52□□□□□ -0.73
CCDC40-202ENST00000374876 COX17Q14061 63 aa10.51□□□□□ -0.73
CCDC40-202ENST00000374876 H0YGX0 51 aa10.5□□□□□ -0.73
CCDC40-202ENST00000374876 SNCGO76070 127 aa10.5□□□□□ -0.73
CCDC40-202ENST00000374876 Q9HAA7 133 aa10.5□□□□□ -0.73
CCDC40-202ENST00000374876 FAM240AA0A1B0GVK7 77 aa10.49□□□□□ -0.73
CCDC40-202ENST00000374876 DNAL4O96015 105 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 119 ms