RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 Q8IZM0 81 aa9.27□□□□□ -0.93
PTPRF-202ENST00000372405 APOMO95445 188 aa9.26□□□□□ -0.93
PTPRF-202ENST00000372405 CRPP02741 224 aa9.26□□□□□ -0.93
PTPRF-202ENST00000372405 DNAH10OSP0CZ25 163 aa9.26□□□□□ -0.93
PTPRF-202ENST00000372405 DNAH1Q9P2D7 4330 aa9.26□□□□□ -0.93
PTPRF-202ENST00000372405 MEIG1Q5JSS6 88 aa9.26□□□□□ -0.93
PTPRF-202ENST00000372405 C2orf82Q6UX34 121 aa9.26□□□□□ -0.93
PTPRF-202ENST00000372405 DNAH7Q8WXX0 4024 aa9.25□□□□□ -0.93
PTPRF-202ENST00000372405 TRAV8-4A0A0B4J246 113 aa9.25□□□□□ -0.93
PTPRF-202ENST00000372405 NHLRC4P0CG21 123 aaPredicted RBP9.25□□□□□ -0.93
PTPRF-202ENST00000372405 RPL24P83731 157 aaKnown RBP9.25□□□□□ -0.93
PTPRF-202ENST00000372405 CIRBPQ14011 172 aaKnown RBP9.25□□□□□ -0.93
PTPRF-202ENST00000372405 C6orf226Q5I0X4 101 aa9.25□□□□□ -0.93
PTPRF-202ENST00000372405 SOSTDC1Q6X4U4 206 aa9.25□□□□□ -0.93
PTPRF-202ENST00000372405 MALP21145 153 aa9.24□□□□□ -0.93
PTPRF-202ENST00000372405 LINC00308Q8TCZ7 52 aa9.24□□□□□ -0.93
PTPRF-202ENST00000372405 A0A1W2PPM0 123 aa9.23□□□□□ -0.93
PTPRF-202ENST00000372405 IFITM1P13164 125 aa9.23□□□□□ -0.93
PTPRF-202ENST00000372405 CCL18P55774 89 aa9.23□□□□□ -0.93
PTPRF-202ENST00000372405 PLECQ15149 4684 aaKnown RBP9.23□□□□□ -0.93
PTPRF-202ENST00000372405 KLK5Q9Y337 293 aaPredicted RBP9.23□□□□□ -0.93
PTPRF-202ENST00000372405 PGPEP1Q9NXJ5 209 aa9.22□□□□□ -0.93
PTPRF-202ENST00000372405 IBA57-AS1B1ANH7 110 aa9.21□□□□□ -0.93
PTPRF-202ENST00000372405 TSPAN13O95857 204 aa9.21□□□□□ -0.93
PTPRF-202ENST00000372405 LINC00526Q96FQ7 95 aa9.21□□□□□ -0.93
PTPRF-202ENST00000372405 UPK3BQ9BT76 320 aa9.21□□□□□ -0.93
PTPRF-202ENST00000372405 APLNQ9ULZ1 77 aa9.21□□□□□ -0.93
PTPRF-202ENST00000372405 TENM2Q9NT68 2774 aa9.21□□□□□ -0.94
PTPRF-202ENST00000372405 A0A0B4J2C4 111 aa9.21□□□□□ -0.94
PTPRF-202ENST00000372405 SFTA2Q6UW10 78 aa9.21□□□□□ -0.94
PTPRF-202ENST00000372405 C6orf223Q8N319 242 aa9.21□□□□□ -0.94
PTPRF-202ENST00000372405 MIR7-3HGQ8N6C7 128 aa9.21□□□□□ -0.94
PTPRF-202ENST00000372405 PRO1854Q9UHT4 67 aa9.21□□□□□ -0.94
PTPRF-202ENST00000372405 STARD9Q9P2P6 4700 aa9.2□□□□□ -0.94
PTPRF-202ENST00000372405 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.2□□□□□ -0.94
PTPRF-202ENST00000372405 PFN2P35080 140 aa9.2□□□□□ -0.94
PTPRF-202ENST00000372405 CKS1BP61024 79 aa9.2□□□□□ -0.94
PTPRF-202ENST00000372405 SPAG11BQ08648 103 aa9.2□□□□□ -0.94
PTPRF-202ENST00000372405 ERG28Q9UKR5 140 aa9.2□□□□□ -0.94
PTPRF-202ENST00000372405 LINC00158P58513 81 aa9.19□□□□□ -0.94
PTPRF-202ENST00000372405 CFAP161Q6P656 301 aa9.19□□□□□ -0.94
PTPRF-202ENST00000372405 CXCL5P42830 114 aa9.19□□□□□ -0.94
PTPRF-202ENST00000372405 C10orf25Q5T742 122 aa9.19□□□□□ -0.94
PTPRF-202ENST00000372405 GAGE10A6NGK3 116 aa9.18□□□□□ -0.94
PTPRF-202ENST00000372405 K7EP34 96 aa9.18□□□□□ -0.94
PTPRF-202ENST00000372405 C1orf43Q9BWL3 253 aa9.18□□□□□ -0.94
PTPRF-202ENST00000372405 FABP2P12104 132 aa9.17□□□□□ -0.94
PTPRF-202ENST00000372405 C9orf116Q5BN46 136 aaPredicted RBP9.17□□□□□ -0.94
PTPRF-202ENST00000372405 UNQ6190/PRO20217Q6UXQ8 127 aa9.17□□□□□ -0.94
PTPRF-202ENST00000372405 GTF2H5Q6ZYL4 71 aa9.17□□□□□ -0.94
PTPRF-202ENST00000372405 Q9HAA7 133 aa9.17□□□□□ -0.94
PTPRF-202ENST00000372405 FBN3Q75N90 2809 aa9.17□□□□□ -0.94
PTPRF-202ENST00000372405 IGKV2D-24A0A075B6R9 120 aa9.17□□□□□ -0.94
PTPRF-202ENST00000372405 C15orf56Q8N910 161 aa9.17□□□□□ -0.94
PTPRF-202ENST00000372405 PPDPFQ9H3Y8 114 aa9.17□□□□□ -0.94
PTPRF-202ENST00000372405 SPCS1Q9Y6A9 102 aa9.16□□□□□ -0.94
PTPRF-202ENST00000372405 NTN5Q8WTR8 489 aaPredicted RBP9.15□□□□□ -0.94
PTPRF-202ENST00000372405 CBY1Q9Y3M2 126 aa9.15□□□□□ -0.94
PTPRF-202ENST00000372405 HIGD2BQ4VC39 106 aa9.15□□□□□ -0.95
PTPRF-202ENST00000372405 H7C2G1 150 aa9.14□□□□□ -0.95
PTPRF-202ENST00000372405 COPS9Q8WXC6 57 aa9.14□□□□□ -0.95
PTPRF-202ENST00000372405 KRTAP1-5Q9BYS1 174 aa9.14□□□□□ -0.95
PTPRF-202ENST00000372405 OCIAD2Q56VL3 154 aa9.13□□□□□ -0.95
PTPRF-202ENST00000372405 NUPR2A6NF83 97 aa9.13□□□□□ -0.95
PTPRF-202ENST00000372405 COX17Q14061 63 aa9.13□□□□□ -0.95
PTPRF-202ENST00000372405 CASC10Q5T4H9 136 aa9.13□□□□□ -0.95
PTPRF-202ENST00000372405 DNAH10Q8IVF4 4471 aa9.12□□□□□ -0.95
PTPRF-202ENST00000372405 IGKV2-28A0A075B6P5 120 aa9.12□□□□□ -0.95
PTPRF-202ENST00000372405 IGKV2D-28P01615 120 aa9.12□□□□□ -0.95
PTPRF-202ENST00000372405 SND1-IT1Q9HBX3 110 aa9.12□□□□□ -0.95
PTPRF-202ENST00000372405 LOC107984156A0A0G2JMH3 177 aa9.12□□□□□ -0.95
PTPRF-202ENST00000372405 RPL13AP40429 203 aaKnown RBP9.12□□□□□ -0.95
PTPRF-202ENST00000372405 ARL17AQ8IVW1 177 aa9.12□□□□□ -0.95
PTPRF-202ENST00000372405 C6orf48Q9UBA6 75 aa9.12□□□□□ -0.95
PTPRF-202ENST00000372405 GVQW2A0A096LPI5 108 aaPredicted RBP9.11□□□□□ -0.95
PTPRF-202ENST00000372405 ZNF561-AS1K7EIQ3 104 aa9.1□□□□□ -0.95
PTPRF-202ENST00000372405 UBE2DNLQ8IWF7 75 aa9.1□□□□□ -0.95
PTPRF-202ENST00000372405 LINC00337Q8N6G1 96 aa9.1□□□□□ -0.95
PTPRF-202ENST00000372405 VPS13DQ5THJ4 4388 aa9.09□□□□□ -0.95
PTPRF-202ENST00000372405 TRIAP1O43715 76 aa9.09□□□□□ -0.95
PTPRF-202ENST00000372405 Q1RN00 199 aa9.09□□□□□ -0.95
PTPRF-202ENST00000372405 H3BMG7 143 aa9.08□□□□□ -0.96
PTPRF-202ENST00000372405 Q6ZRU5 148 aa9.08□□□□□ -0.96
PTPRF-202ENST00000372405 Q8NDZ9 215 aa9.08□□□□□ -0.96
PTPRF-202ENST00000372405 CAMK2N2Q96S95 79 aa9.08□□□□□ -0.96
PTPRF-202ENST00000372405 TRBV30A0A0K0K1B3 111 aa9.08□□□□□ -0.96
PTPRF-202ENST00000372405 C2orf48Q96LS8 159 aa9.08□□□□□ -0.96
PTPRF-202ENST00000372405 TCL1BO95988 128 aa9.07□□□□□ -0.96
PTPRF-202ENST00000372405 PSMB2P49721 201 aa9.07□□□□□ -0.96
PTPRF-202ENST00000372405 TGP01266 2768 aa9.07□□□□□ -0.96
PTPRF-202ENST00000372405 K7ERU9 68 aa9.06□□□□□ -0.96
PTPRF-202ENST00000372405 USP17L23D6RBM5 183 aa9.06□□□□□ -0.96
PTPRF-202ENST00000372405 RMI2Q96E14 147 aa9.06□□□□□ -0.96
PTPRF-202ENST00000372405 SCGB1C2P0DMR2 95 aa9.05□□□□□ -0.96
PTPRF-202ENST00000372405 PRR3P79522 188 aaKnown RBP9.05□□□□□ -0.96
PTPRF-202ENST00000372405 SLPIP03973 132 aa9.04□□□□□ -0.96
PTPRF-202ENST00000372405 TRAV13-2A0A0B4J235 113 aa9.04□□□□□ -0.96
PTPRF-202ENST00000372405 RNF151Q2KHN1 245 aa9.04□□□□□ -0.96
PTPRF-202ENST00000372405 LYRM7Q5U5X0 104 aa9.04□□□□□ -0.96
PTPRF-202ENST00000372405 MTURNQ8N3F0 131 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 103.7 ms