RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 ZNF861PO60384 105 aa2.84□□□□□ -1.96
USH2A-202ENST00000366942 TP53AIP1Q9HCN2 124 aa2.84□□□□□ -1.96
USH2A-202ENST00000366942 APLNQ9ULZ1 77 aa2.84□□□□□ -1.96
USH2A-202ENST00000366942 Q6ZRU5 148 aa2.84□□□□□ -1.96
USH2A-202ENST00000366942 RSPO1Q2MKA7 263 aaPredicted RBP2.83□□□□□ -1.96
USH2A-202ENST00000366942 Q6ZQY7 126 aa2.83□□□□□ -1.96
USH2A-202ENST00000366942 WFDC13Q8IUB5 93 aa2.83□□□□□ -1.96
USH2A-202ENST00000366942 UNQ6190/PRO20217Q6UXQ8 127 aa2.83□□□□□ -1.96
USH2A-202ENST00000366942 IGLV4-60A0A075B6I1 120 aa2.83□□□□□ -1.96
USH2A-202ENST00000366942 CARHSP1Q9Y2V2 147 aaKnown RBP2.83□□□□□ -1.96
USH2A-202ENST00000366942 SIPA1L1O43166 1804 aa2.83□□□□□ -1.96
USH2A-202ENST00000366942 KIF26AQ9ULI4 1882 aaPredicted RBP2.83□□□□□ -1.96
USH2A-202ENST00000366942 TOMM6Q96B49 74 aa2.83□□□□□ -1.96
USH2A-202ENST00000366942 MRPL52Q86TS9 123 aaKnown RBP2.82□□□□□ -1.96
USH2A-202ENST00000366942 TEN1Q86WV5 123 aa2.82□□□□□ -1.96
USH2A-202ENST00000366942 PLXNB1O43157 2135 aa2.82□□□□□ -1.96
USH2A-202ENST00000366942 M0QY20 66 aa2.82□□□□□ -1.96
USH2A-202ENST00000366942 NDUFV3P56181 108 aaKnown RBP2.82□□□□□ -1.96
USH2A-202ENST00000366942 C14orf144Q96I85 54 aa2.82□□□□□ -1.96
USH2A-202ENST00000366942 CSDC2Q9Y534 153 aaKnown RBP2.82□□□□□ -1.96
USH2A-202ENST00000366942 CDKN2A-AS1Q9UH64 79 aa2.82□□□□□ -1.96
USH2A-202ENST00000366942 TIMM17BO60830 172 aa2.82□□□□□ -1.96
USH2A-202ENST00000366942 C7orf65Q6ZTY9 151 aa2.82□□□□□ -1.96
USH2A-202ENST00000366942 LINC00526Q96FQ7 95 aa2.82□□□□□ -1.96
USH2A-202ENST00000366942 A0A1B0GW54 56 aa2.81□□□□□ -1.96
USH2A-202ENST00000366942 PLA2G10O15496 165 aa2.81□□□□□ -1.96
USH2A-202ENST00000366942 Q8NAQ8 132 aa2.81□□□□□ -1.96
USH2A-202ENST00000366942 UNC79Q9P2D8 2635 aa2.81□□□□□ -1.96
USH2A-202ENST00000366942 GREB1LQ9C091 1923 aaPredicted RBP2.81□□□□□ -1.96
USH2A-202ENST00000366942 A0A0B4J2C4 111 aa2.81□□□□□ -1.96
USH2A-202ENST00000366942 IGLC3P0DOY3 106 aa2.81□□□□□ -1.96
USH2A-202ENST00000366942 VPREB1P12018 145 aa2.81□□□□□ -1.96
USH2A-202ENST00000366942 PRLHP81277 87 aa2.81□□□□□ -1.96
USH2A-202ENST00000366942 CDC42SE2Q9NRR3 84 aa2.81□□□□□ -1.96
USH2A-202ENST00000366942 NYNRINQ9P2P1 1898 aaKnown RBP2.81□□□□□ -1.96
USH2A-202ENST00000366942 DEFB1P60022 68 aa2.81□□□□□ -1.96
USH2A-202ENST00000366942 TP53TG3Q9ULZ0 132 aa2.81□□□□□ -1.96
USH2A-202ENST00000366942 CELA1Q9UNI1 258 aa2.81□□□□□ -1.96
USH2A-202ENST00000366942 A0A087WSZ3 146 aa2.81□□□□□ -1.96
USH2A-202ENST00000366942 H3BT86 120 aa2.81□□□□□ -1.96
USH2A-202ENST00000366942 IGLV7-43P04211 117 aa2.81□□□□□ -1.96
USH2A-202ENST00000366942 FP248Q71RG6 208 aaPredicted RBP2.81□□□□□ -1.96
USH2A-202ENST00000366942 VWA8A3KMH1 1905 aa2.81□□□□□ -1.96
USH2A-202ENST00000366942 TRBV7-6A0A0J9YX20 115 aa2.8□□□□□ -1.96
USH2A-202ENST00000366942 RPL39P62891 51 aaKnown RBP2.8□□□□□ -1.96
USH2A-202ENST00000366942 TRBV27A0A0K0K1C4 114 aa2.8□□□□□ -1.96
USH2A-202ENST00000366942 CAMK2N1Q7Z7J9 78 aa2.8□□□□□ -1.96
USH2A-202ENST00000366942 PLXNA4Q9HCM2 1894 aa2.8□□□□□ -1.96
USH2A-202ENST00000366942 NDUFC2O95298 119 aa2.8□□□□□ -1.96
USH2A-202ENST00000366942 HTTP42858 3142 aa2.8□□□□□ -1.96
USH2A-202ENST00000366942 FAM229BQ4G0N7 80 aa2.8□□□□□ -1.96
USH2A-202ENST00000366942 ANAPC13Q9BS18 74 aa2.79□□□□□ -1.96
USH2A-202ENST00000366942 FAM30AQ9NZY2 134 aa2.79□□□□□ -1.96
USH2A-202ENST00000366942 GVQW2A0A096LPI5 108 aaPredicted RBP2.79□□□□□ -1.96
USH2A-202ENST00000366942 H2BFSP57053 126 aa2.79□□□□□ -1.96
USH2A-202ENST00000366942 TNP2Q05952 138 aa2.79□□□□□ -1.96
USH2A-202ENST00000366942 COL4A4P53420 1690 aaPredicted RBP2.79□□□□□ -1.96
USH2A-202ENST00000366942 E9PLD3 99 aa2.79□□□□□ -1.96
USH2A-202ENST00000366942 CXCL6P80162 114 aa2.79□□□□□ -1.96
USH2A-202ENST00000366942 GDF5OSQ5U4N7 250 aa2.79□□□□□ -1.96
USH2A-202ENST00000366942 PATE2Q6UY27 113 aa2.79□□□□□ -1.96
USH2A-202ENST00000366942 PCDH15Q96QU1 1955 aa2.79□□□□□ -1.96
USH2A-202ENST00000366942 TNRC6AQ8NDV7 1962 aaKnown RBP2.79□□□□□ -1.96
USH2A-202ENST00000366942 IGLV4-3A0A075B6K6 122 aa2.79□□□□□ -1.96
USH2A-202ENST00000366942 TRBV10-3A0A0K0K1G6 114 aa2.79□□□□□ -1.96
USH2A-202ENST00000366942 ETDBQ3ZM63 59 aa2.79□□□□□ -1.96
USH2A-202ENST00000366942 SOSTDC1Q6X4U4 206 aa2.79□□□□□ -1.96
USH2A-202ENST00000366942 C2orf91Q6ZV80 131 aa2.79□□□□□ -1.96
USH2A-202ENST00000366942 Q9UF83 564 aa2.79□□□□□ -1.96
USH2A-202ENST00000366942 HCG22E2RYF7 251 aa2.78□□□□□ -1.96
USH2A-202ENST00000366942 IGLV6-57P01721 117 aa2.78□□□□□ -1.96
USH2A-202ENST00000366942 KRTAP10-11P60412 298 aa2.78□□□□□ -1.96
USH2A-202ENST00000366942 HEATR5AQ86XA9 2040 aa2.78□□□□□ -1.96
USH2A-202ENST00000366942 SRCAPQ6ZRS2 3230 aa2.78□□□□□ -1.96
USH2A-202ENST00000366942 PHF5AQ7RTV0 110 aaKnown RBP2.78□□□□□ -1.96
USH2A-202ENST00000366942 HIST3H2BBQ8N257 126 aa2.78□□□□□ -1.96
USH2A-202ENST00000366942 RETNLBQ9BQ08 111 aa2.78□□□□□ -1.96
USH2A-202ENST00000366942 ZSWIM8A7E2V4 1837 aa2.78□□□□□ -1.96
USH2A-202ENST00000366942 PLXND1Q9Y4D7 1925 aa2.78□□□□□ -1.96
USH2A-202ENST00000366942 ERC2-IT1O76042 136 aa2.78□□□□□ -1.97
USH2A-202ENST00000366942 ZNF22P17026 224 aaPredicted RBP2.78□□□□□ -1.97
USH2A-202ENST00000366942 PCNTO95613 3336 aa2.78□□□□□ -1.97
USH2A-202ENST00000366942 HELZP42694 1942 aaKnown RBP2.77□□□□□ -1.97
USH2A-202ENST00000366942 GBF1Q92538 1859 aa2.77□□□□□ -1.97
USH2A-202ENST00000366942 CSAG1Q6PB30 78 aa2.77□□□□□ -1.97
USH2A-202ENST00000366942 C18orf32Q8TCD1 76 aa2.77□□□□□ -1.97
USH2A-202ENST00000366942 LINC00308Q8TCZ7 52 aa2.77□□□□□ -1.97
USH2A-202ENST00000366942 BRCA2P51587 3418 aa2.76□□□□□ -1.97
USH2A-202ENST00000366942 LITAFQ99732 161 aa2.76□□□□□ -1.97
USH2A-202ENST00000366942 ITPR3Q14573 2671 aa2.76□□□□□ -1.97
USH2A-202ENST00000366942 PTPRSQ13332 1948 aa2.76□□□□□ -1.97
USH2A-202ENST00000366942 FAM19A4Q96LR4 140 aa2.76□□□□□ -1.97
USH2A-202ENST00000366942 LTBP2Q14767 1821 aa2.76□□□□□ -1.97
USH2A-202ENST00000366942 NCOA6Q14686 2063 aaPredicted RBP2.76□□□□□ -1.97
USH2A-202ENST00000366942 LCTP09848 1927 aa2.76□□□□□ -1.97
USH2A-202ENST00000366942 ADCYAP1P18509 176 aa2.76□□□□□ -1.97
USH2A-202ENST00000366942 IGLV8-61A0A075B6I0 122 aa2.75□□□□□ -1.97
USH2A-202ENST00000366942 HIST1H2BJP06899 126 aa2.75□□□□□ -1.97
USH2A-202ENST00000366942 HIST1H2BOP23527 126 aa2.75□□□□□ -1.97
USH2A-202ENST00000366942 HIST1H2BBP33778 126 aa2.75□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms