RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 RPL37AP61513 92 aaKnown RBP10.73□□□□□ -0.69
CLN3-203ENST00000357806 SMIM1B2RUZ4 78 aa10.72□□□□□ -0.69
CLN3-203ENST00000357806 IGLC3P0DOY3 106 aa10.72□□□□□ -0.69
CLN3-203ENST00000357806 CKS1BP61024 79 aa10.72□□□□□ -0.69
CLN3-203ENST00000357806 C6orf226Q5I0X4 101 aa10.72□□□□□ -0.69
CLN3-203ENST00000357806 C2orf82Q6UX34 121 aa10.72□□□□□ -0.69
CLN3-203ENST00000357806 SCO1O75880 301 aa10.71□□□□□ -0.69
CLN3-203ENST00000357806 TLX1NBP0CAT3 122 aa10.71□□□□□ -0.69
CLN3-203ENST00000357806 SRRM2Q9UQ35 2752 aaKnown RBP10.71□□□□□ -0.7
CLN3-203ENST00000357806 H3BRM9 83 aa10.7□□□□□ -0.7
CLN3-203ENST00000357806 C7orf33Q8WU49 177 aa10.7□□□□□ -0.7
CLN3-203ENST00000357806 CXCL5P42830 114 aa10.69□□□□□ -0.7
CLN3-203ENST00000357806 KRTAP10-4P60372 401 aaPredicted RBP10.69□□□□□ -0.7
CLN3-203ENST00000357806 SPINK8P0C7L1 97 aa10.68□□□□□ -0.7
CLN3-203ENST00000357806 IFI27L1Q96BM0 104 aa10.68□□□□□ -0.7
CLN3-203ENST00000357806 SERF1AO75920 110 aa10.68□□□□□ -0.7
CLN3-203ENST00000357806 Q6ZRP5 223 aa10.68□□□□□ -0.7
CLN3-203ENST00000357806 FAM19A2Q8N3H0 131 aa10.68□□□□□ -0.7
CLN3-203ENST00000357806 COX7B2Q8TF08 81 aa10.68□□□□□ -0.7
CLN3-203ENST00000357806 NDUFC2-KCTD14E9PQ53 114 aa10.67□□□□□ -0.7
CLN3-203ENST00000357806 F8VRH5 84 aa10.67□□□□□ -0.7
CLN3-203ENST00000357806 TRAV12-1A0A0B4J245 112 aa10.66□□□□□ -0.7
CLN3-203ENST00000357806 ZNF22P17026 224 aaPredicted RBP10.66□□□□□ -0.7
CLN3-203ENST00000357806 LINC00310P59036 64 aa10.66□□□□□ -0.7
CLN3-203ENST00000357806 CHTOPQ9Y3Y2 248 aaKnown RBP10.66□□□□□ -0.7
CLN3-203ENST00000357806 GAGE2EQ4V326 116 aa10.65□□□□□ -0.7
CLN3-203ENST00000357806 C9orf116Q5BN46 136 aaPredicted RBP10.65□□□□□ -0.7
CLN3-203ENST00000357806 GAGE2DQ9UEU5 116 aa10.65□□□□□ -0.7
CLN3-203ENST00000357806 C11orf86A6NJI1 115 aa10.64□□□□□ -0.71
CLN3-203ENST00000357806 LEPROTL1O95214 131 aa10.64□□□□□ -0.71
CLN3-203ENST00000357806 A0A1W2PNN7 141 aa10.63□□□□□ -0.71
CLN3-203ENST00000357806 TMEM170BQ5T4T1 132 aa10.63□□□□□ -0.71
CLN3-203ENST00000357806 FLG2Q5D862 2391 aaPredicted RBP10.62□□□□□ -0.71
CLN3-203ENST00000357806 IGLV5-39A0A0G2JS06 123 aa10.61□□□□□ -0.71
CLN3-203ENST00000357806 HSPB8Q9UJY1 196 aa10.61□□□□□ -0.71
CLN3-203ENST00000357806 NUPR1O60356 82 aa10.6□□□□□ -0.71
CLN3-203ENST00000357806 HIST1H2BKO60814 126 aa10.6□□□□□ -0.71
CLN3-203ENST00000357806 HIST1H2BJP06899 126 aa10.6□□□□□ -0.71
CLN3-203ENST00000357806 HIST1H2BOP23527 126 aa10.6□□□□□ -0.71
CLN3-203ENST00000357806 HIST1H2BBP33778 126 aa10.6□□□□□ -0.71
CLN3-203ENST00000357806 HIST1H2BDP58876 126 aa10.6□□□□□ -0.71
CLN3-203ENST00000357806 HIST1H2BCP62807 126 aa10.6□□□□□ -0.71
CLN3-203ENST00000357806 HIST2H2BEQ16778 126 aa10.6□□□□□ -0.71
CLN3-203ENST00000357806 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.6□□□□□ -0.71
CLN3-203ENST00000357806 HIST1H2BHQ93079 126 aa10.6□□□□□ -0.71
CLN3-203ENST00000357806 HIST1H2BNQ99877 126 aa10.6□□□□□ -0.71
CLN3-203ENST00000357806 HIST1H2BMQ99879 126 aa10.6□□□□□ -0.71
CLN3-203ENST00000357806 FAM168BA1KXE4 195 aa10.59□□□□□ -0.71
CLN3-203ENST00000357806 H0Y8G0 127 aa10.59□□□□□ -0.71
CLN3-203ENST00000357806 PRR3P79522 188 aaKnown RBP10.59□□□□□ -0.71
CLN3-203ENST00000357806 PKHD1L1Q86WI1 4243 aa10.59□□□□□ -0.71
CLN3-203ENST00000357806 C9orf129Q5T035 196 aaKnown RBP10.58□□□□□ -0.72
CLN3-203ENST00000357806 FAM19A5Q7Z5A7 132 aaPredicted RBP10.58□□□□□ -0.72
CLN3-203ENST00000357806 MYCBP2O75592 4640 aa10.57□□□□□ -0.72
CLN3-203ENST00000357806 HNRNPA3P51991 378 aaKnown RBP10.57□□□□□ -0.72
CLN3-203ENST00000357806 ODF1Q14990 250 aa10.57□□□□□ -0.72
CLN3-203ENST00000357806 FABP4P15090 132 aa10.56□□□□□ -0.72
CLN3-203ENST00000357806 SFTA2Q6UW10 78 aa10.56□□□□□ -0.72
CLN3-203ENST00000357806 PHF5AQ7RTV0 110 aaKnown RBP10.56□□□□□ -0.72
CLN3-203ENST00000357806 TMEM223A0PJW6 202 aa10.55□□□□□ -0.72
CLN3-203ENST00000357806 M0QXV9 152 aa10.55□□□□□ -0.72
CLN3-203ENST00000357806 XAGE1AQ9HD64 81 aa10.55□□□□□ -0.72
CLN3-203ENST00000357806 PLNP26678 52 aa10.53□□□□□ -0.72
CLN3-203ENST00000357806 MAP1LC3CQ9BXW4 147 aa10.53□□□□□ -0.72
CLN3-203ENST00000357806 KRTAP7-1Q8IUC3 87 aa10.52□□□□□ -0.73
CLN3-203ENST00000357806 KRTAP29-1A8MX34 341 aaPredicted RBP10.51□□□□□ -0.73
CLN3-203ENST00000357806 PSORS1C2Q9UIG4 136 aa10.51□□□□□ -0.73
CLN3-203ENST00000357806 ERG28Q9UKR5 140 aa10.51□□□□□ -0.73
CLN3-203ENST00000357806 PFN2P35080 140 aa10.5□□□□□ -0.73
CLN3-203ENST00000357806 COX17Q14061 63 aa10.5□□□□□ -0.73
CLN3-203ENST00000357806 SERTAD4-AS1Q5TG53 156 aa10.5□□□□□ -0.73
CLN3-203ENST00000357806 ZNF625Q96I27 306 aaPredicted RBP10.5□□□□□ -0.73
CLN3-203ENST00000357806 J3QL48 77 aa10.49□□□□□ -0.73
CLN3-203ENST00000357806 DPM2O94777 84 aa10.49□□□□□ -0.73
CLN3-203ENST00000357806 UBE2BP63146 152 aa10.49□□□□□ -0.73
CLN3-203ENST00000357806 OXTP01178 125 aa10.49□□□□□ -0.73
CLN3-203ENST00000357806 IGKCP01834 107 aa10.48□□□□□ -0.73
CLN3-203ENST00000357806 C1orf137Q5JT78 98 aa10.48□□□□□ -0.73
CLN3-203ENST00000357806 COA6Q5JTJ3 125 aaKnown RBP10.48□□□□□ -0.73
CLN3-203ENST00000357806 PMCHL2Q9BQD1 86 aa10.48□□□□□ -0.73
CLN3-203ENST00000357806 PLA2G2DQ9UNK4 145 aa10.47□□□□□ -0.73
CLN3-203ENST00000357806 C22orf24Q9Y442 160 aa10.47□□□□□ -0.73
CLN3-203ENST00000357806 DMBT1Q9UGM3 2413 aaPredicted RBP10.46□□□□□ -0.73
CLN3-203ENST00000357806 HERVK_113P61574 105 aa10.46□□□□□ -0.74
CLN3-203ENST00000357806 LBHQ53QV2 105 aaPredicted RBP10.46□□□□□ -0.74
CLN3-203ENST00000357806 SPINK6Q6UWN8 80 aa10.46□□□□□ -0.74
CLN3-203ENST00000357806 TP73-AS1Q9UF72 201 aa10.46□□□□□ -0.74
CLN3-203ENST00000357806 SYS1-DBNDD2H3BUS1 97 aa10.45□□□□□ -0.74
CLN3-203ENST00000357806 LRP1Q07954 4544 aaKnown RBP10.44□□□□□ -0.74
CLN3-203ENST00000357806 HERV-K104P63124 156 aa10.44□□□□□ -0.74
CLN3-203ENST00000357806 MRPL55Q7Z7F7 128 aaKnown RBP10.44□□□□□ -0.74
CLN3-203ENST00000357806 KRTAP11-1Q8IUC1 163 aa10.44□□□□□ -0.74
CLN3-203ENST00000357806 SND1-IT1Q9HBX3 110 aa10.44□□□□□ -0.74
CLN3-203ENST00000357806 FAT3Q8TDW7 4589 aa10.44□□□□□ -0.74
CLN3-203ENST00000357806 LEPROTO15243 131 aa10.43□□□□□ -0.74
CLN3-203ENST00000357806 PLEKHB2Q96CS7 222 aa10.43□□□□□ -0.74
CLN3-203ENST00000357806 NDUFA12Q9UI09 145 aa10.43□□□□□ -0.74
CLN3-203ENST00000357806 LINC00158P58513 81 aa10.42□□□□□ -0.74
CLN3-203ENST00000357806 SRSF9Q13242 221 aaKnown RBP eCLIP10.42□□□□□ -0.74
CLN3-203ENST00000357806 MEIG1Q5JSS6 88 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms