RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 CRPP02741 224 aa15.07■□□□□ 0
SHMT1-202ENST00000352886 PFN2P35080 140 aa15.07■□□□□ 0
SHMT1-202ENST00000352886 C11orf68Q9H3H3 251 aaKnown RBP15.07■□□□□ 0
SHMT1-202ENST00000352886 TRAV8-4A0A0B4J246 113 aa15.07■□□□□ 0
SHMT1-202ENST00000352886 LINC00337Q8N6G1 96 aa15.07■□□□□ 0
SHMT1-202ENST00000352886 IGKV2-28A0A075B6P5 120 aa15.06■□□□□ 0
SHMT1-202ENST00000352886 IGKV2D-28P01615 120 aa15.06■□□□□ 0
SHMT1-202ENST00000352886 C6orf226Q5I0X4 101 aa15.06■□□□□ 0
SHMT1-202ENST00000352886 NDUFV3P56181 108 aaKnown RBP15.06■□□□□ 0
SHMT1-202ENST00000352886 CCL18P55774 89 aa15.05■□□□□ 0
SHMT1-202ENST00000352886 DAD1P61803 113 aa15.05■□□□□ -0
SHMT1-202ENST00000352886 GAGE2BQ13066 116 aa15.05■□□□□ -0
SHMT1-202ENST00000352886 GAGE2EQ4V326 116 aa15.05■□□□□ -0
SHMT1-202ENST00000352886 GAGE2DQ9UEU5 116 aa15.05■□□□□ -0
SHMT1-202ENST00000352886 CCDC179H3BU77 68 aa15.04■□□□□ -0
SHMT1-202ENST00000352886 SNCGO76070 127 aa15.03■□□□□ -0
SHMT1-202ENST00000352886 FAM218AQ96MZ4 157 aa15.03■□□□□ -0
SHMT1-202ENST00000352886 CELA1Q9UNI1 258 aa15.03■□□□□ -0
SHMT1-202ENST00000352886 RPL28P46779 137 aaKnown RBP15.02■□□□□ -0
SHMT1-202ENST00000352886 LINC00269Q8N2A0 174 aa15.02■□□□□ -0
SHMT1-202ENST00000352886 ATRQ13535 2644 aa15.01□□□□□ -0.01
SHMT1-202ENST00000352886 TRACP01848 142 aa15.01□□□□□ -0.01
SHMT1-202ENST00000352886 Q8NAQ8 132 aa15.01□□□□□ -0.01
SHMT1-202ENST00000352886 Q8IZM0 81 aa15.01□□□□□ -0.01
SHMT1-202ENST00000352886 HIVEP1P15822 2718 aa15□□□□□ -0.01
SHMT1-202ENST00000352886 DEFB121Q5J5C9 76 aa15□□□□□ -0.01
SHMT1-202ENST00000352886 Q8N3U1 123 aa15□□□□□ -0.01
SHMT1-202ENST00000352886 ATP5G1P05496 136 aa14.99□□□□□ -0.01
SHMT1-202ENST00000352886 MIFP14174 115 aa14.99□□□□□ -0.01
SHMT1-202ENST00000352886 TRRAPQ9Y4A5 3859 aa14.99□□□□□ -0.01
SHMT1-202ENST00000352886 TEP1Q99973 2627 aaKnown RBP14.99□□□□□ -0.01
SHMT1-202ENST00000352886 TTC32Q5I0X7 151 aa14.98□□□□□ -0.01
SHMT1-202ENST00000352886 ANGP03950 147 aaKnown RBP14.98□□□□□ -0.01
SHMT1-202ENST00000352886 SMIM20Q8N5G0 67 aa14.97□□□□□ -0.01
SHMT1-202ENST00000352886 SMIM11BQ8TCY0 68 aa14.97□□□□□ -0.01
SHMT1-202ENST00000352886 IGLV10-54A0A075B6I4 117 aa14.96□□□□□ -0.01
SHMT1-202ENST00000352886 LINC01561Q8N1V8 128 aa14.96□□□□□ -0.01
SHMT1-202ENST00000352886 CD164L2Q6UWJ8 174 aa14.96□□□□□ -0.01
SHMT1-202ENST00000352886 IGHV4-30-4P0DP06 118 aa14.95□□□□□ -0.02
SHMT1-202ENST00000352886 HTN3P15516 51 aa14.95□□□□□ -0.02
SHMT1-202ENST00000352886 REG3AQ06141 175 aa14.95□□□□□ -0.02
SHMT1-202ENST00000352886 Q6Q795 121 aa14.95□□□□□ -0.02
SHMT1-202ENST00000352886 CHCHD10Q8WYQ3 142 aaPredicted RBP14.95□□□□□ -0.02
SHMT1-202ENST00000352886 BAALC-AS2P0C853 105 aa14.95□□□□□ -0.02
SHMT1-202ENST00000352886 SPART-AS1P0CW21 52 aa14.94□□□□□ -0.02
SHMT1-202ENST00000352886 WFDC9Q8NEX5 89 aa14.94□□□□□ -0.02
SHMT1-202ENST00000352886 Q9HAA7 133 aa14.93□□□□□ -0.02
SHMT1-202ENST00000352886 FAM240AA0A1B0GVK7 77 aa14.93□□□□□ -0.02
SHMT1-202ENST00000352886 C15orf53Q8NAA6 179 aa14.92□□□□□ -0.02
SHMT1-202ENST00000352886 OR13C6PQ8NH95 151 aa14.92□□□□□ -0.02
SHMT1-202ENST00000352886 KIAA0087Q14695 138 aa14.91□□□□□ -0.02
SHMT1-202ENST00000352886 MRPL23Q16540 153 aaKnown RBP14.91□□□□□ -0.02
SHMT1-202ENST00000352886 MALP21145 153 aa14.91□□□□□ -0.02
SHMT1-202ENST00000352886 A0A087WYN8 130 aa14.9□□□□□ -0.02
SHMT1-202ENST00000352886 C22orf24Q9Y442 160 aa14.9□□□□□ -0.02
SHMT1-202ENST00000352886 WIPF1O43516 503 aa14.89□□□□□ -0.03
SHMT1-202ENST00000352886 H0YGX0 51 aa14.87□□□□□ -0.03
SHMT1-202ENST00000352886 DNAL4O96015 105 aa14.87□□□□□ -0.03
SHMT1-202ENST00000352886 CXCL5P42830 114 aa14.87□□□□□ -0.03
SHMT1-202ENST00000352886 LELP1Q5T871 98 aa14.87□□□□□ -0.03
SHMT1-202ENST00000352886 COX17Q14061 63 aa14.84□□□□□ -0.03
SHMT1-202ENST00000352886 C9orf116Q5BN46 136 aaPredicted RBP14.84□□□□□ -0.03
SHMT1-202ENST00000352886 PRR3P79522 188 aaKnown RBP14.83□□□□□ -0.04
SHMT1-202ENST00000352886 ACYP1P07311 99 aa14.82□□□□□ -0.04
SHMT1-202ENST00000352886 LECT2O14960 151 aa14.81□□□□□ -0.04
SHMT1-202ENST00000352886 KLK12Q9UKR0 248 aa14.81□□□□□ -0.04
SHMT1-202ENST00000352886 OXLD1Q5BKU9 147 aa14.8□□□□□ -0.04
SHMT1-202ENST00000352886 NDUFC2O95298 119 aa14.78□□□□□ -0.04
SHMT1-202ENST00000352886 INAFM2P0DMQ5 153 aa14.78□□□□□ -0.04
SHMT1-202ENST00000352886 PRR34Q9NV39 138 aa14.78□□□□□ -0.04
SHMT1-202ENST00000352886 SPAG11BQ08648 103 aa14.77□□□□□ -0.04
SHMT1-202ENST00000352886 C6orf223Q8N319 242 aa14.77□□□□□ -0.04
SHMT1-202ENST00000352886 KLK5Q9Y337 293 aaPredicted RBP14.77□□□□□ -0.04
SHMT1-202ENST00000352886 NANOS2P60321 138 aaKnown RBP14.77□□□□□ -0.05
SHMT1-202ENST00000352886 LYPD5Q6UWN5 251 aa14.77□□□□□ -0.05
SHMT1-202ENST00000352886 RETNQ9HD89 108 aa14.76□□□□□ -0.05
SHMT1-202ENST00000352886 C10orf25Q5T742 122 aa14.76□□□□□ -0.05
SHMT1-202ENST00000352886 LINC00526Q96FQ7 95 aa14.76□□□□□ -0.05
SHMT1-202ENST00000352886 C9orf129Q5T035 196 aaKnown RBP14.75□□□□□ -0.05
SHMT1-202ENST00000352886 ENHOQ6UWT2 76 aa14.75□□□□□ -0.05
SHMT1-202ENST00000352886 UNQ6190/PRO20217Q6UXQ8 127 aa14.75□□□□□ -0.05
SHMT1-202ENST00000352886 SLPIP03973 132 aa14.74□□□□□ -0.05
SHMT1-202ENST00000352886 KRTAP10-11P60412 298 aa14.74□□□□□ -0.05
SHMT1-202ENST00000352886 SMCR5Q8TEV8 140 aa14.74□□□□□ -0.05
SHMT1-202ENST00000352886 C3orf56Q8N813 242 aa14.74□□□□□ -0.05
SHMT1-202ENST00000352886 GAGE2AQ6NT46 116 aa14.73□□□□□ -0.05
SHMT1-202ENST00000352886 Q8NDZ9 215 aa14.73□□□□□ -0.05
SHMT1-202ENST00000352886 TMEM126AQ9H061 195 aa14.73□□□□□ -0.05
SHMT1-202ENST00000352886 CYSRT1A8MQ03 144 aa14.72□□□□□ -0.05
SHMT1-202ENST00000352886 NCR3O14931 201 aa14.72□□□□□ -0.05
SHMT1-202ENST00000352886 F8P00451 2351 aa14.71□□□□□ -0.05
SHMT1-202ENST00000352886 TRBV7-7A0A0K0K1E9 115 aa14.7□□□□□ -0.06
SHMT1-202ENST00000352886 C14orf132Q9NPU4 83 aa14.7□□□□□ -0.06
SHMT1-202ENST00000352886 KPRPQ5T749 579 aaPredicted RBP14.69□□□□□ -0.06
SHMT1-202ENST00000352886 ORMDL1Q9P0S3 153 aa14.69□□□□□ -0.06
SHMT1-202ENST00000352886 A0A0J9YWU9 116 aa14.68□□□□□ -0.06
SHMT1-202ENST00000352886 SDIM1Q6ZPB5 146 aa14.68□□□□□ -0.06
SHMT1-202ENST00000352886 OBSCN-AS1Q96MR7 158 aa14.68□□□□□ -0.06
SHMT1-202ENST00000352886 Q6ZTC4 211 aa14.67□□□□□ -0.06
SHMT1-202ENST00000352886 WFDC10BQ8IUB3 73 aa14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms