RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 CYSLTR1Q9Y271 337 aa10.22□□□□□ -0.77
CLN3-201ENST00000333496 RNASE13Q5GAN3 156 aaKnown RBP10.22□□□□□ -0.77
CLN3-201ENST00000333496 FAM104AQ969W3 186 aa10.22□□□□□ -0.77
CLN3-201ENST00000333496 SCGB3A1Q96QR1 104 aa10.22□□□□□ -0.77
CLN3-201ENST00000333496 IGKV2D-26A0A0A0MRZ7 120 aa10.21□□□□□ -0.78
CLN3-201ENST00000333496 C9orf118A6NHY6 69 aa10.21□□□□□ -0.78
CLN3-201ENST00000333496 XCL1P47992 114 aa10.21□□□□□ -0.78
CLN3-201ENST00000333496 CNBPP62633 177 aaKnown RBP10.21□□□□□ -0.78
CLN3-201ENST00000333496 Q5VSD8 79 aa10.21□□□□□ -0.78
CLN3-201ENST00000333496 CHAC1Q9BUX1 264 aa10.21□□□□□ -0.78
CLN3-201ENST00000333496 TIMM21Q9BVV7 248 aa10.21□□□□□ -0.78
CLN3-201ENST00000333496 Q6ZUT4 128 aa10.2□□□□□ -0.78
CLN3-201ENST00000333496 GTF2H5Q6ZYL4 71 aa10.2□□□□□ -0.78
CLN3-201ENST00000333496 SCXQ7RTU7 201 aa10.2□□□□□ -0.78
CLN3-201ENST00000333496 SS18Q15532 418 aa10.19□□□□□ -0.78
CLN3-201ENST00000333496 TAL2Q16559 108 aa10.19□□□□□ -0.78
CLN3-201ENST00000333496 ERASQ7Z444 233 aa10.19□□□□□ -0.78
CLN3-201ENST00000333496 CHTOPQ9Y3Y2 248 aaKnown RBP10.19□□□□□ -0.78
CLN3-201ENST00000333496 SMAGPQ0VAQ4 97 aa10.18□□□□□ -0.78
CLN3-201ENST00000333496 CFAP161Q6P656 301 aa10.18□□□□□ -0.78
CLN3-201ENST00000333496 CBY1Q9Y3M2 126 aa10.18□□□□□ -0.78
CLN3-201ENST00000333496 HIGD2BQ4VC39 106 aa10.18□□□□□ -0.78
CLN3-201ENST00000333496 CD164L2Q6UWJ8 174 aa10.18□□□□□ -0.78
CLN3-201ENST00000333496 SDIM1Q6ZPB5 146 aa10.18□□□□□ -0.78
CLN3-201ENST00000333496 CIRBP-AS1Q8TBR5 109 aa10.18□□□□□ -0.78
CLN3-201ENST00000333496 IGIPA6NJ69 53 aa10.17□□□□□ -0.78
CLN3-201ENST00000333496 PAPPA-AS1Q5QFB9 102 aa10.17□□□□□ -0.78
CLN3-201ENST00000333496 OPRPNQ99935 248 aaPredicted RBP10.17□□□□□ -0.78
CLN3-201ENST00000333496 GVQW2A0A096LPI5 108 aaPredicted RBP10.16□□□□□ -0.78
CLN3-201ENST00000333496 TMEM141Q96I45 108 aa10.16□□□□□ -0.78
CLN3-201ENST00000333496 TIMM17AQ99595 171 aa10.16□□□□□ -0.78
CLN3-201ENST00000333496 SPANXA1Q9NS26 97 aa10.16□□□□□ -0.78
CLN3-201ENST00000333496 TRAV13-1A0A0B4J241 112 aa10.15□□□□□ -0.78
CLN3-201ENST00000333496 GAGE10A6NGK3 116 aa10.15□□□□□ -0.78
CLN3-201ENST00000333496 PANO1I0J062 215 aa10.15□□□□□ -0.78
CLN3-201ENST00000333496 SMIM13P0DJ93 91 aa10.15□□□□□ -0.78
CLN3-201ENST00000333496 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.15□□□□□ -0.78
CLN3-201ENST00000333496 FAM229AH3BQW9 127 aa10.15□□□□□ -0.79
CLN3-201ENST00000333496 K7EP34 96 aa10.15□□□□□ -0.79
CLN3-201ENST00000333496 MRPS36P82909 103 aaKnown RBP10.15□□□□□ -0.79
CLN3-201ENST00000333496 CEND1Q8N111 149 aa10.15□□□□□ -0.79
CLN3-201ENST00000333496 SRRM2Q9UQ35 2752 aaKnown RBP10.14□□□□□ -0.79
CLN3-201ENST00000333496 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.14□□□□□ -0.79
CLN3-201ENST00000333496 E9PLD3 99 aa10.14□□□□□ -0.79
CLN3-201ENST00000333496 H3BUT2 72 aa10.14□□□□□ -0.79
CLN3-201ENST00000333496 IGHV1-58A0A0C4DH39 117 aa10.13□□□□□ -0.79
CLN3-201ENST00000333496 A0A1W2PPM0 123 aa10.13□□□□□ -0.79
CLN3-201ENST00000333496 LINC00528Q8N1L1 170 aa10.13□□□□□ -0.79
CLN3-201ENST00000333496 LINC00526Q96FQ7 95 aa10.13□□□□□ -0.79
CLN3-201ENST00000333496 PYGO1Q9Y3Y4 419 aa10.13□□□□□ -0.79
CLN3-201ENST00000333496 IGHV3-64A0A075B6Q5 118 aa10.12□□□□□ -0.79
CLN3-201ENST00000333496 FXYD2P54710 66 aa10.12□□□□□ -0.79
CLN3-201ENST00000333496 HERVK_113P61574 105 aa10.12□□□□□ -0.79
CLN3-201ENST00000333496 TTTY13Q9BZ97 58 aa10.12□□□□□ -0.79
CLN3-201ENST00000333496 MYMXA0A1B0GTQ4 84 aa10.11□□□□□ -0.79
CLN3-201ENST00000333496 FABP2P12104 132 aa10.11□□□□□ -0.79
CLN3-201ENST00000333496 CIRBPQ14011 172 aaKnown RBP10.11□□□□□ -0.79
CLN3-201ENST00000333496 CST9LQ9H4G1 147 aa10.11□□□□□ -0.79
CLN3-201ENST00000333496 COX7A2LO14548 114 aa10.11□□□□□ -0.79
CLN3-201ENST00000333496 PMVKQ15126 192 aa10.11□□□□□ -0.79
CLN3-201ENST00000333496 RAB37Q96AX2 223 aa10.11□□□□□ -0.79
CLN3-201ENST00000333496 IGLV4-3A0A075B6K6 122 aa10.1□□□□□ -0.79
CLN3-201ENST00000333496 INAFM2P0DMQ5 153 aa10.1□□□□□ -0.79
CLN3-201ENST00000333496 C5orf38Q86SI9 138 aa10.1□□□□□ -0.79
CLN3-201ENST00000333496 CHTF8P0CG12 524 aa10.09□□□□□ -0.79
CLN3-201ENST00000333496 COX6A2Q02221 97 aa10.09□□□□□ -0.79
CLN3-201ENST00000333496 SPCS1Q9Y6A9 102 aa10.09□□□□□ -0.79
CLN3-201ENST00000333496 IGHV3OR16-9A0A0B4J2B5 98 aa10.08□□□□□ -0.8
CLN3-201ENST00000333496 K7ERU9 68 aa10.08□□□□□ -0.8
CLN3-201ENST00000333496 MALP21145 153 aa10.08□□□□□ -0.8
CLN3-201ENST00000333496 HIST1H4GQ99525 98 aa10.08□□□□□ -0.8
CLN3-201ENST00000333496 NHP2Q9NX24 153 aaKnown RBP10.08□□□□□ -0.8
CLN3-201ENST00000333496 IGLV4-69A0A075B6H9 119 aa10.07□□□□□ -0.8
CLN3-201ENST00000333496 ZNF561-AS1K7EIQ3 104 aa10.07□□□□□ -0.8
CLN3-201ENST00000333496 OCIAD2Q56VL3 154 aa10.07□□□□□ -0.8
CLN3-201ENST00000333496 VCX2Q9H322 139 aa10.07□□□□□ -0.8
CLN3-201ENST00000333496 C11orf86A6NJI1 115 aa10.07□□□□□ -0.8
CLN3-201ENST00000333496 KRTAP10-4P60372 401 aaPredicted RBP10.07□□□□□ -0.8
CLN3-201ENST00000333496 TMEM238LA0A1B0GVL6 79 aa10.06□□□□□ -0.8
CLN3-201ENST00000333496 A6NJY4 79 aa10.06□□□□□ -0.8
CLN3-201ENST00000333496 PLA2G1BP04054 148 aaKnown RBP10.06□□□□□ -0.8
CLN3-201ENST00000333496 SPACA4Q8TDM5 124 aa10.06□□□□□ -0.8
CLN3-201ENST00000333496 AMELXQ99217 191 aa10.06□□□□□ -0.8
CLN3-201ENST00000333496 MYCBP2O75592 4640 aa10.06□□□□□ -0.8
CLN3-201ENST00000333496 A0A1B0GWB2 263 aa10.05□□□□□ -0.8
CLN3-201ENST00000333496 ZNF815PA8K554 130 aa10.05□□□□□ -0.8
CLN3-201ENST00000333496 LINC00242Q5T6M2 205 aa10.05□□□□□ -0.8
CLN3-201ENST00000333496 CARD19Q96LW7 228 aa10.05□□□□□ -0.8
CLN3-201ENST00000333496 FLG2Q5D862 2391 aaPredicted RBP10.05□□□□□ -0.8
CLN3-201ENST00000333496 A0A087WYN8 130 aa10.04□□□□□ -0.8
CLN3-201ENST00000333496 SYCNQ0VAF6 134 aa10.04□□□□□ -0.8
CLN3-201ENST00000333496 K7ERJ3 54 aa10.04□□□□□ -0.8
CLN3-201ENST00000333496 UBE2D1P51668 147 aa10.04□□□□□ -0.8
CLN3-201ENST00000333496 SCGB1D4Q6XE38 83 aa10.04□□□□□ -0.8
CLN3-201ENST00000333496 Q6ZRU5 148 aa10.04□□□□□ -0.8
CLN3-201ENST00000333496 NAA38Q9BRA0 125 aaKnown RBP10.04□□□□□ -0.8
CLN3-201ENST00000333496 PKHD1L1Q86WI1 4243 aa10.03□□□□□ -0.8
CLN3-201ENST00000333496 A0A096LNI7 61 aa10.03□□□□□ -0.8
CLN3-201ENST00000333496 APOMO95445 188 aa10.03□□□□□ -0.8
CLN3-201ENST00000333496 IGKV2-24A0A0C4DH68 120 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 88.7 ms