RNA–Protein interactions for RNA: ENST00000325404.2

SOX2-201, Transcript of SRY-box 2, humanhuman

APPRIS P1 BASIC

Gene SOX2, Length 2,513 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2-201ENST00000325404 LINC00482Q8N8I6 264 aa13.87□□□□□ -0.19
SOX2-201ENST00000325404 LINC00959A0A1B0GUT2 108 aa13.86□□□□□ -0.19
SOX2-201ENST00000325404 A0A1B0GUV1 79 aa13.86□□□□□ -0.19
SOX2-201ENST00000325404 CCL18P55774 89 aa13.86□□□□□ -0.19
SOX2-201ENST00000325404 NIPBLQ6KC79 2804 aaeCLIP13.86□□□□□ -0.19
SOX2-201ENST00000325404 LINC00643Q86TS7 51 aa13.85□□□□□ -0.19
SOX2-201ENST00000325404 F8P00451 2351 aa13.85□□□□□ -0.19
SOX2-201ENST00000325404 JMJD1CQ15652 2540 aa13.85□□□□□ -0.19
SOX2-201ENST00000325404 MALP21145 153 aa13.84□□□□□ -0.19
SOX2-201ENST00000325404 SS18L2Q9UHA2 77 aa13.84□□□□□ -0.19
SOX2-201ENST00000325404 IGKV3OR2-268A0A0C4DH90 116 aa13.83□□□□□ -0.2
SOX2-201ENST00000325404 SMIM11BQ8TCY0 68 aa13.83□□□□□ -0.2
SOX2-201ENST00000325404 SMIM9A6NGZ8 99 aa13.83□□□□□ -0.2
SOX2-201ENST00000325404 SS18Q15532 418 aa13.81□□□□□ -0.2
SOX2-201ENST00000325404 C5orf38Q86SI9 138 aa13.81□□□□□ -0.2
SOX2-201ENST00000325404 Q8IZM0 81 aa13.8□□□□□ -0.2
SOX2-201ENST00000325404 NOTCH3Q9UM47 2321 aa13.8□□□□□ -0.2
SOX2-201ENST00000325404 DNAL4O96015 105 aa13.79□□□□□ -0.2
SOX2-201ENST00000325404 GYPEP15421 78 aa13.79□□□□□ -0.2
SOX2-201ENST00000325404 C6orf226Q5I0X4 101 aa13.79□□□□□ -0.2
SOX2-201ENST00000325404 DEFB130BP0DP73 79 aa13.79□□□□□ -0.2
SOX2-201ENST00000325404 DEFB130AP0DP74 79 aa13.79□□□□□ -0.2
SOX2-201ENST00000325404 PRO0255Q9UI72 69 aa13.78□□□□□ -0.2
SOX2-201ENST00000325404 B5MCH6 92 aa13.77□□□□□ -0.21
SOX2-201ENST00000325404 SMCR5Q8TEV8 140 aa13.77□□□□□ -0.21
SOX2-201ENST00000325404 OBSCN-AS1Q96MR7 158 aa13.77□□□□□ -0.21
SOX2-201ENST00000325404 Q9HAA7 133 aa13.77□□□□□ -0.21
SOX2-201ENST00000325404 CCDC179H3BU77 68 aa13.77□□□□□ -0.21
SOX2-201ENST00000325404 CXCL5P42830 114 aa13.77□□□□□ -0.21
SOX2-201ENST00000325404 X6R8D5 127 aa13.77□□□□□ -0.21
SOX2-201ENST00000325404 PFN2P35080 140 aa13.76□□□□□ -0.21
SOX2-201ENST00000325404 A0A087WYN8 130 aa13.75□□□□□ -0.21
SOX2-201ENST00000325404 PAX4O43316 350 aa13.75□□□□□ -0.21
SOX2-201ENST00000325404 C9orf66Q5T8R8 295 aa13.75□□□□□ -0.21
SOX2-201ENST00000325404 ATRQ13535 2644 aa13.74□□□□□ -0.21
SOX2-201ENST00000325404 LYRM9A8MSI8 78 aa13.74□□□□□ -0.21
SOX2-201ENST00000325404 ATP5G1P05496 136 aa13.73□□□□□ -0.21
SOX2-201ENST00000325404 TENM1Q9UKZ4 2725 aa13.73□□□□□ -0.21
SOX2-201ENST00000325404 XCL1P47992 114 aa13.72□□□□□ -0.21
SOX2-201ENST00000325404 COX17Q14061 63 aa13.72□□□□□ -0.21
SOX2-201ENST00000325404 SPATA3Q8NHX4 192 aa13.72□□□□□ -0.21
SOX2-201ENST00000325404 A0A1B0GX51 115 aa13.71□□□□□ -0.21
SOX2-201ENST00000325404 TEP1Q99973 2627 aaKnown RBP13.71□□□□□ -0.22
SOX2-201ENST00000325404 NDUFC2O95298 119 aa13.7□□□□□ -0.22
SOX2-201ENST00000325404 GAGE2AQ6NT46 116 aa13.7□□□□□ -0.22
SOX2-201ENST00000325404 CD164L2Q6UWJ8 174 aa13.7□□□□□ -0.22
SOX2-201ENST00000325404 OR13C6PQ8NH95 151 aa13.69□□□□□ -0.22
SOX2-201ENST00000325404 VWFP04275 2813 aa13.69□□□□□ -0.22
SOX2-201ENST00000325404 LECT2O14960 151 aa13.68□□□□□ -0.22
SOX2-201ENST00000325404 LINC00167Q96N53 147 aa13.68□□□□□ -0.22
SOX2-201ENST00000325404 FAM236AA0A1B0GUQ0 79 aa13.68□□□□□ -0.22
SOX2-201ENST00000325404 FAM236BA0A1B0GV22 79 aa13.68□□□□□ -0.22
SOX2-201ENST00000325404 KLK5Q9Y337 293 aaPredicted RBP13.68□□□□□ -0.22
SOX2-201ENST00000325404 IGHV4-28A0A0C4DH34 117 aa13.67□□□□□ -0.22
SOX2-201ENST00000325404 KIAA0087Q14695 138 aa13.67□□□□□ -0.22
SOX2-201ENST00000325404 ORMDL1Q9P0S3 153 aa13.65□□□□□ -0.22
SOX2-201ENST00000325404 C11orf68Q9H3H3 251 aaKnown RBP13.64□□□□□ -0.23
SOX2-201ENST00000325404 MUC7Q8TAX7 377 aa13.64□□□□□ -0.23
SOX2-201ENST00000325404 LINC00269Q8N2A0 174 aa13.62□□□□□ -0.23
SOX2-201ENST00000325404 SMIM20Q8N5G0 67 aa13.62□□□□□ -0.23
SOX2-201ENST00000325404 WFDC9Q8NEX5 89 aa13.62□□□□□ -0.23
SOX2-201ENST00000325404 CHCHD10Q8WYQ3 142 aaPredicted RBP13.62□□□□□ -0.23
SOX2-201ENST00000325404 C14orf132Q9NPU4 83 aa13.62□□□□□ -0.23
SOX2-201ENST00000325404 NANOS2P60321 138 aaKnown RBP13.62□□□□□ -0.23
SOX2-201ENST00000325404 C9orf129Q5T035 196 aaKnown RBP13.62□□□□□ -0.23
SOX2-201ENST00000325404 TMEM126AQ9H061 195 aa13.62□□□□□ -0.23
SOX2-201ENST00000325404 CLPSL2Q6UWE3 100 aa13.6□□□□□ -0.23
SOX2-201ENST00000325404 APOC4P55056 127 aa13.6□□□□□ -0.23
SOX2-201ENST00000325404 HIST1H4AP62805 103 aaKnown RBP13.6□□□□□ -0.23
SOX2-201ENST00000325404 REG3AQ06141 175 aa13.6□□□□□ -0.23
SOX2-201ENST00000325404 KRTAP24-1Q3LI83 254 aa13.6□□□□□ -0.23
SOX2-201ENST00000325404 Q6JHZ5 121 aa13.6□□□□□ -0.23
SOX2-201ENST00000325404 A0A096LPF7 62 aa13.59□□□□□ -0.23
SOX2-201ENST00000325404 JMJD7-PLA2G4BH0Y9G9 81 aa13.58□□□□□ -0.23
SOX2-201ENST00000325404 Q8N814 137 aa13.58□□□□□ -0.23
SOX2-201ENST00000325404 ANGP03950 147 aaKnown RBP13.57□□□□□ -0.24
SOX2-201ENST00000325404 C3orf22Q8N5N4 141 aa13.57□□□□□ -0.24
SOX2-201ENST00000325404 UQCRQO14949 82 aa13.56□□□□□ -0.24
SOX2-201ENST00000325404 DAD1P61803 113 aa13.56□□□□□ -0.24
SOX2-201ENST00000325404 TMEM256-PLSCR3K7ERE1 68 aa13.56□□□□□ -0.24
SOX2-201ENST00000325404 NCR3O14931 201 aa13.56□□□□□ -0.24
SOX2-201ENST00000325404 WIPF1O43516 503 aa13.56□□□□□ -0.24
SOX2-201ENST00000325404 SLPIP03973 132 aa13.56□□□□□ -0.24
SOX2-201ENST00000325404 CCKP06307 115 aa13.55□□□□□ -0.24
SOX2-201ENST00000325404 MIFP14174 115 aa13.55□□□□□ -0.24
SOX2-201ENST00000325404 LINC00846Q9NV44 126 aa13.55□□□□□ -0.24
SOX2-201ENST00000325404 CYSRT1A8MQ03 144 aa13.54□□□□□ -0.24
SOX2-201ENST00000325404 DEFB135Q30KP9 77 aa13.54□□□□□ -0.24
SOX2-201ENST00000325404 LINC00526Q96FQ7 95 aa13.53□□□□□ -0.24
SOX2-201ENST00000325404 ATOX1O00244 68 aa13.53□□□□□ -0.24
SOX2-201ENST00000325404 LELP1Q5T871 98 aa13.53□□□□□ -0.24
SOX2-201ENST00000325404 PRR3P79522 188 aaKnown RBP13.52□□□□□ -0.25
SOX2-201ENST00000325404 C3orf56Q8N813 242 aa13.52□□□□□ -0.25
SOX2-201ENST00000325404 Q8NAQ8 132 aa13.52□□□□□ -0.25
SOX2-201ENST00000325404 TRRAPQ9Y4A5 3859 aa13.52□□□□□ -0.25
SOX2-201ENST00000325404 A0A0J9YWU9 116 aa13.51□□□□□ -0.25
SOX2-201ENST00000325404 IGHV4-30-4P0DP06 118 aa13.51□□□□□ -0.25
SOX2-201ENST00000325404 S100A7L2Q5SY68 101 aa13.51□□□□□ -0.25
SOX2-201ENST00000325404 IGLV10-54A0A075B6I4 117 aa13.5□□□□□ -0.25
SOX2-201ENST00000325404 COX7CP15954 63 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms